diff --git a/salomon.csv b/salomon.csv index ffdb0725ef6fbe3199ca211dd9cb33012755c84f..b6a79a4107f6153292e93848c27f45c7e0d60f52 100644 --- a/salomon.csv +++ b/salomon.csv @@ -1525,6 +1525,7 @@ Qt5/5.11.1-GCC-6.3.0-2.27,2 Qt5/5.8.0,2 Qt5/5.8.0-GCC-6.3.0-2.27,2 Qt5/5.8.0-intel-2017a,2 +Qualimap/2.2.1-intel-2017a,2 QuantumESPRESSO/5.4.0-foss-2015g,2 QuantumESPRESSO/5.4.0-foss-2017a,2 QuantumESPRESSO/6.0-intel-2017a,2 diff --git a/salomon.md b/salomon.md index a787a714a42da9b40d6ee40d74f4a4dc7359195f..f5fe9cba337066753a0c4e212ea1ce6c663b14d4 100644 --- a/salomon.md +++ b/salomon.md @@ -14,6 +14,7 @@ | [HTSlib](http://www.htslib.org/) | A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix | | [picard](http://sourceforge.net/projects/picard) | A set of tools (in Java) for working with next generation sequencing data in the BAM format. | | [PLUMED](http://www.plumed-code.org) | PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes. | +| Qualimap | Old module, description not available. | | [RELION](http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page) | RELION (for REgularised LIkelihood OptimisatioN, pronounce rely-on) is a stand-alone computer program that employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D class averages in electron cryo-microscopy (cryo-EM). | | [Rosetta](https://www.rosettacommons.org) | Rosetta is the premier software suite for modeling macromolecular structures. As a flexible, multi-purpose application, it includes tools for structure prediction, design, and remodeling of proteins and nucleic acids. | | [SAMtools](http://www.htslib.org/) | SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format. |