From 18750641482c2bcb938794f74b20e76725c842c6 Mon Sep 17 00:00:00 2001 From: Easy Build <easybuild@login4.head.smc.salomon.it4i.cz> Date: Thu, 25 Apr 2019 13:15:05 +0200 Subject: [PATCH] Thu, 25 Apr 2019 13:15:04 +0200 --- salomon.csv | 1 + salomon.md | 1 + 2 files changed, 2 insertions(+) diff --git a/salomon.csv b/salomon.csv index ffdb0725..b6a79a41 100644 --- a/salomon.csv +++ b/salomon.csv @@ -1525,6 +1525,7 @@ Qt5/5.11.1-GCC-6.3.0-2.27,2 Qt5/5.8.0,2 Qt5/5.8.0-GCC-6.3.0-2.27,2 Qt5/5.8.0-intel-2017a,2 +Qualimap/2.2.1-intel-2017a,2 QuantumESPRESSO/5.4.0-foss-2015g,2 QuantumESPRESSO/5.4.0-foss-2017a,2 QuantumESPRESSO/6.0-intel-2017a,2 diff --git a/salomon.md b/salomon.md index a787a714..f5fe9cba 100644 --- a/salomon.md +++ b/salomon.md @@ -14,6 +14,7 @@ | [HTSlib](http://www.htslib.org/) | A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix | | [picard](http://sourceforge.net/projects/picard) | A set of tools (in Java) for working with next generation sequencing data in the BAM format. | | [PLUMED](http://www.plumed-code.org) | PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes. | +| Qualimap | Old module, description not available. | | [RELION](http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page) | RELION (for REgularised LIkelihood OptimisatioN, pronounce rely-on) is a stand-alone computer program that employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D class averages in electron cryo-microscopy (cryo-EM). | | [Rosetta](https://www.rosettacommons.org) | Rosetta is the premier software suite for modeling macromolecular structures. As a flexible, multi-purpose application, it includes tools for structure prediction, design, and remodeling of proteins and nucleic acids. | | [SAMtools](http://www.htslib.org/) | SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format. | -- GitLab