From 5512493770ac0ce246d8099f8431f797687bfe3e Mon Sep 17 00:00:00 2001 From: Easy Build <easybuild@login4.smc.salomon.it4i.cz> Date: Mon, 22 Oct 2018 14:00:04 +0200 Subject: [PATCH] Mon, 22 Oct 2018 14:00:04 +0200 --- salomon.csv | 1 + salomon.md | 1 + 2 files changed, 2 insertions(+) diff --git a/salomon.csv b/salomon.csv index c674786e..99d1e655 100644 --- a/salomon.csv +++ b/salomon.csv @@ -1431,6 +1431,7 @@ RELION/1.3-intel-2015b,2 renderproto/0.11,2 renderproto/0.11-intel-2015b,2 requests/2.18.4-Py-3.6,2 +Rosetta/3.10-intel-2017c,2 RStudio/0.98.1103,2 ruamel.yaml/0.15.35-Py-3.6,2 Ruby/2.1.5-intel-2015b,2 diff --git a/salomon.md b/salomon.md index 0feb63ae..bde812ef 100644 --- a/salomon.md +++ b/salomon.md @@ -25,6 +25,7 @@ | [picard](http://sourceforge.net/projects/picard) | A set of tools (in Java) for working with next generation sequencing data in the BAM format. | | [PLUMED](http://www.plumed-code.org) | PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes. | | [RELION](http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page) | RELION (for REgularised LIkelihood OptimisatioN, pronounce rely-on) is a stand-alone computer program that employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D class averages in electron cryo-microscopy (cryo-EM). | +| [Rosetta](https://www.rosettacommons.org) | Rosetta is the premier software suite for modeling macromolecular structures. As a flexible, multi-purpose application, it includes tools for structure prediction, design, and remodeling of proteins and nucleic acids. | | [SAMtools](http://www.htslib.org/) | SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format. | | [SnpEff](http://snpeff.sourceforge.net/) | Genetic variant annotation and effect prediction toolbox. | | [Trimmomatic](http://www.usadellab.org/cms/?page=trimmomatic) | Trimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data.The selection of trimming steps and their associated parameters are supplied on the command line. | -- GitLab