Commit d878eb6f authored by easybuild's avatar easybuild

fix GPU

parent 38195647
Bootstrap: docker
From: centos:latest
%setup
cp /apps/easybuild/sources/n/NVIDIA/NVIDIA-Linux-x86_64-390.30.run /tmp
%post
yum -y update && yum -y upgrade
# CentOS repo
yum -y install python gcc make wget vim mc procps tcl gcc-c++ gcc-gfortran pkg-config acl acpid alsa-lib alsa-lib-devel amtu apr aspell at atk atk-devel attr audit audit-libs audit-libs-python authconfig autoconf autofs automake avahi-glib avahi-libs basesystem bash bc bind-libs bind-utils binutils binutils-devel bison bison-devel bluez-libs bridge-utils busybox bzip2 bzip2-devel bzip2-libs ca-certificates cairo cairo-devel c-ares ccid cdparanoia-libs centos-indexhtml centos-release checkpolicy chkconfig cloog-ppl compat-libcap1 compat-libstdc++-33 compat-readline5 ConsoleKit ConsoleKit-libs coolkey coreutils coreutils-libs cpio cpp cppunit cpupowerutils cpuspeed cracklib cracklib-dicts crash crda cronie cronie-anacron crontabs cryptsetup-luks cryptsetup-luks-libs cups cups-libs curl cvs cyrus-sasl cyrus-sasl-devel cyrus-sasl-gssapi cyrus-sasl-lib cyrus-sasl-plain dash db4 db4-cxx db4-devel db4-utils dbus dbus-devel dbus-glib dbus-glib-devel dbus-libs dbus-python dejavu-fonts-common dejavu-lgc-sans-mono-fonts dejavu-sans-mono-fonts desktop-file-utils device-mapper device-mapper-event device-mapper-event-libs device-mapper-libs device-mapper-multipath device-mapper-multipath-libs device-mapper-persistent-data diffutils dmidecode dmraid dmraid-events dmz-cursor-themes docbook-dtds docbook-style-dsssl docbook-style-xsl docbook-utils dos2unix dosfstools dracut dracut-kernel dracut-network dump e2fsprogs e2fsprogs-devel e2fsprogs-libs ed eggdbus eject elfutils-libelf elfutils-libelf-devel elfutils-libs emacs emacs-common environment-modules ethtool expat expat-devel expect file file-devel file-libs filesystem findutils finger fipscheck fipscheck-lib flac fontconfig fontconfig-devel fontpackages-filesystem foomatic foomatic-db foomatic-db-filesystem foomatic-db-ppds freeglut freeglut-devel freetype freetype-devel ftp fuse fuse-libs gamin gamin-python gawk gcc gcc-c++ gcc-gfortran GConf2 GConf2-devel gd gdb gdbm gdbm-devel gdk-pixbuf2 gdk-pixbuf2-devel genisoimage gettext gettext-devel gettext-libs ghostscript ghostscript-fonts giflib git glib2 glib2-devel glibc glibc-common glibc-debuginfo glibc-debuginfo-common glibc-devel glibc-headers glx-utils gmp gmp-devel gnome-icon-theme gnome-keyring gnome-keyring-devel gnome-themes gnome-vfs2 gnome-vfs2-devel gnupg2 gnuplot gnuplot-common gnutls gnutls-devel gperf gpgme gpm gpm-libs grep groff grub grubby gstreamer gstreamer-plugins-base gstreamer-tools gtk2 gtk2-devel gtk2-engines gtk-doc gzip hal hal-devel hal-info hal-libs hdparm hesiod hicolor-icon-theme hunspell hwdata hwloc hwloc-devel ilmbase ImageMagick indent info initscripts iproute iptables iptables-ipv6 iptstate iputils irqbalance iscsi-initiator-utils iso-codes iw jasper-libs jwhois kbd kbd-misc kernel kernel kernel-devel kernel-firmware kernel-headers keyutils keyutils-libs keyutils-libs-devel kpartx krb5-devel krb5-libs krb5-workstation ksh lcms-libs less lftp libacl libacl-devel libaio libart_lgpl libart_lgpl-devel libasyncns libattr libattr-devel libbasicobjects libblkid libbonobo libbonobo-devel libbonoboui libbonoboui-devel libcanberra libcanberra-gtk2 libcap libcap-devel libcap-ng libcgroup libcollection libcom_err libcom_err-devel libcroco libcroco-devel libcxgb3 libcxgb4 libdaemon libdhash libdrm libdrm-devel libedit libedit-devel libevent libexif libffi libfontenc libgcc libgcj libgcrypt libgcrypt-devel libgfortran libglade2 libglade2-devel libgnome libgnomecanvas libgnomecanvas-devel libgnome-devel libgomp libgpg-error libgpg-error-devel libgsf libgsf-devel libgssglue libgudev1 libhugetlbfs libibcm libibcm-devel libibverbs libibverbs-devel libibverbs-devel-static libibverbs-utils libICE libICE-devel libicu libIDL libIDL-devel libidn libidn-devel libini_config libipa_hbac libjpeg-turbo libjpeg-turbo-devel libldb libmcpp libmlx4 libmlx5 libmng libmng-devel libmthca libmthca-static libnetfilter_conntrack libnfnetlink libnih libnl libnl-devel libnotify libogg liboil libotf libpath_utils libpcap libpciaccess libpciaccess-devel libpng libpng-devel libproxy libproxy-bin libproxy-python libref_array librsvg2 librsvg2-devel libselinux libselinux-devel libselinux-python libselinux-utils libsemanage libsepol libsepol-devel libSM libSM-devel libsndfile libss libssh2 libsss_idmap libstdc++ libstdc++-devel libsysfs libsysfs-devel libtalloc libtasn1 libtasn1-devel libtdb libtevent libthai libtheora libtiff libtiff-devel libtirpc libtool-ltdl libudev libudev-devel libunistring libusb libusb1 libusb-devel libuser libutempter libuuid libvisual libvorbis libwmf libwmf-lite libwnck libX11 libX11-common libX11-devel libXau libXau-devel libXaw libXaw-devel libxcb libxcb-devel libXcomposite libXcomposite-devel libXcursor libXcursor-devel libXdamage libXdamage-devel libXdmcp libXdmcp-devel libXext libXext-devel libXfixes libXfixes-devel libXfont libXft libXft-devel libXi libXi-devel libXinerama libXinerama-devel libxkbfile libxml2 libxml2-devel libxml2-python libXmu libXmu-devel libXp libXpm libXpm-devel libXrandr libXrandr-devel libXrender libXrender-devel libXres libXScrnSaver libXScrnSaver-devel libxslt libxslt-devel libXt libXt-devel libXtst libXtst-devel libXv libXv-devel libXxf86misc libXxf86misc-devel libXxf86vm libXxf86vm-devel lm_sensors-libs lockdev logrotate lsof lvm2 lvm2-libs lynx lzo m17n-db m17n-db-datafiles m17n-lib m2crypto m4 mailcap mailx make MAKEDEV man man-pages mc mcpp mcstrans mdadm mesa-dri1-drivers mesa-dri-drivers mesa-dri-filesystem mesa-libGL mesa-libGL-devel mesa-libGLU mesa-libGLU-devel mesa-private-llvm mgetty microcode_ctl mingetty mkbootdisk mlocate module-init-tools mpfr mtools mtr mysql-libs nano nc ncurses ncurses-base ncurses-devel ncurses-libs net-snmp net-snmp-libs net-tools newt newt-python nfs-utils nfs-utils-lib nmap notification-daemon nscd nspr nspr-devel nss nss_db nss-devel nss-softokn nss-softokn-debuginfo nss-softokn-devel nss-softokn-freebl nss-softokn-freebl-devel nss-sysinit nss-tools nss-util nss-util-devel ntp ntpdate ntsysv OpenEXR-libs OpenIPMI OpenIPMI-libs openjade openjpeg-libs openldap openldap-devel openmotif openmotif22 opensp openssh openssh-clients openssh-server ORBit2 ORBit2-devel p11-kit p11-kit-trust pam pam-devel pam_krb5 pam_passwdqc pam_pkcs11 pango pango-devel paps paps-libs parted passwd patch pax pciutils pciutils-devel pciutils-libs pcmciautils pcp pcp-conf pcp-libs pcre pcsc-lite pcsc-lite-libs perf perl perl-AppConfig perl-Authen-SASL perl-Bit-Vector perl-Carp-Clan perl-CGI perl-Class-Singleton perl-Compress-Raw-Zlib perl-Compress-Zlib perl-Convert-ASN1 perl-Crypt-PasswdMD5 perl-Date-Calc perl-Date-Manip perl-DateTime perl-DBD-Pg perl-DBI perl-devel perl-Digest-HMAC perl-Digest-SHA1 perl-Error perl-ExtUtils-MakeMaker perl-ExtUtils-ParseXS perl-File-Which perl-Git perl-GSSAPI perl-HTML-Parser perl-HTML-Tagset perl-IO-Compress-Base perl-IO-Compress-Zlib perl-IO-Socket-SSL perl-JSON perl-LDAP perl-libs perl-libwww-perl perl-List-MoreUtils perl-Module-Pluggable perl-Net-LibIDN perl-Net-SSLeay perl-Net-Telnet perl-Params-Validate perl-PCP-PMDA perl-Pod-Escapes perl-Pod-Simple perl-SGMLSpm perl-Socket6 perl-String-CRC32 perl-TermReadKey perl-Test-Harness perl-Test-Simple perl-Text-Iconv perl-Time-HiRes perl-URI perl-version perl-WWW-Curl perl-XML-Filter-BufferText perl-XML-LibXML perl-XML-NamespaceSupport perl-XML-Parser perl-XML-SAX perl-XML-SAX-Writer perl-XML-Simple perl-YAML-Syck pinentry pinfo pixman pixman-devel pkgconfig plymouth plymouth-core-libs plymouth-scripts pm-utils policycoreutils polkit poppler poppler-data poppler-utils popt popt-devel portreserve postfix postgresql postgresql-devel postgresql-libs postgresql-odbc ppl ppp prelink procmail procps psacct psmisc pth pulseaudio-libs pycairo pycairo-devel pygobject2 pygobject2-codegen pygobject2-devel pygobject2-doc pygpgme pygtk2 pygtk2-codegen pygtk2-devel pygtk2-doc pyOpenSSL pytalloc python python-argparse python-devel python-iniparse python-libs python-pcp python-pycurl python-setuptools python-sssdconfig python-urlgrabber qt qt3 qt-sqlite qt-x11 quota rarian rarian-compat rdate rdma readahead readline readline-devel redhat-logos redhat-lsb redhat-lsb-compat redhat-lsb-core redhat-lsb-graphics redhat-lsb-printing redhat-menus redhat-rpm-config rmt rootfiles rpcbind rpm rpm-devel rpm-libs rpm-python rp-pppoe rrdtool rsh rsync ruby ruby-libs samba samba4-libs samba-common samba-winbind samba-winbind-clients screen SDL SDL-devel sed selinux-policy setserial setup setuptool sgml-common sgpio shadow-utils shared-mime-info slang smartmontools snappy sos sound-theme-freedesktop sqlite sqlite-devel sssd sssd-ad sssd-client sssd-common sssd-common-pac sssd-ipa sssd-krb5 sssd-krb5-common sssd-ldap sssd-proxy startup-notification startup-notification-devel strace stunnel sudo swig symlinks sysfsutils syslinux syslinux-nonlinux sysstat system-gnome-theme system-icon-theme systemtap-devel sysvinit-tools t1lib talk tar tcl tcl-devel tcpdump tcp_wrappers tcp_wrappers-libs tcsh telnet time tk tmpwatch traceroute tree tunctl tzdata udev udftools unix2dos unixODBC unixODBC-devel unzip upstart urw-fonts usbutils usermode ustr util-linux-ng vconfig vim-common vim-enhanced vim-filesystem vim-minimal virt-what wget which wireless-tools words wpa_supplicant xcb-util xdg-utils xerces-c xerces-c-devel xinetd xkeyboard-config xml-common xmlrpc-c xmlrpc-c-client xorg-x11-fonts-100dpi xorg-x11-fonts-75dpi xorg-x11-font-utils xorg-x11-proto-devel xorg-x11-server-common xorg-x11-server-utils xorg-x11-xauth xorg-x11-xkb-utils xterm xz xz-libs xz-lzma-compat ypbind yp-tools yum yum-metadata-parser yum-plugin-auto-update-debug-info yum-plugin-fastestmirror yum-plugin-priorities yum-plugin-security yum-plugin-versionlock yum-utils zip zlib zlib-devel
# Fedora repo
yum -y install bash-completion pigz tmux
yum -y groupinstall "Development Tools"
cd /tmp
# OpenMPI
wget https://www.open-mpi.org/software/ompi/v2.1/downloads/openmpi-2.1.1.tar.gz
tar xvf openmpi-2.1.1.tar.gz && cd openmpi-2.1.1
./configure --prefix=/usr/local
make -j 16
make install
# pip
curl -s -O https://bootstrap.pypa.io/get-pip.py
python get-pip.py
pip install setuptools python-graph-core python-graph-dot tabulate numpy scipy pandas wheel --upgrade
# lua
wget http://dl.fedoraproject.org/pub/epel/7/x86_64/Packages/l/lua-posix-32-2.el7.x86_64.rpm
wget http://dl.fedoraproject.org/pub/epel/7/x86_64/Packages/l/lua-filesystem-1.6.2-2.el7.x86_64.rpm
wget http://mirror.centos.org/centos/7/os/x86_64/Packages/lua-devel-5.1.4-15.el7.x86_64.rpm
wget http://dl.fedoraproject.org/pub/epel/7/x86_64/Packages/l/lua-bitop-1.0.2-3.el7.x86_64.rpm
rpm -ihv lua-devel-5.1.4-15.el7.x86_64.rpm
rpm -ihv lua-filesystem-1.6.2-2.el7.x86_64.rpm
rpm -ihv lua-bitop-1.0.2-3.el7.x86_64.rpm
rpm -ihv lua-posix-32-2.el7.x86_64.rpm
# Lmod
wget https://github.com/TACC/Lmod/archive/7.7.7.tar.gz
tar xvf 7.7.7.tar.gz
cd Lmod-7.7.7
./configure --prefix=/opt/apps
make install
# GPU
driver_version=390.30
driver="/tmp/NVIDIA-Linux-x86_64-$driver_version.run"
sh $driver -x
mv NVIDIA-Linux-x86_64-$driver_version /usr/local/
dir=/usr/local/NVIDIA-Linux-x86_64-$driver_version
cd $dir
ln -s libcuda.so.$driver_version libcuda.so
ln -s libEGL.so.$driver_version libEGL.so
ln -s libGLESv1_CM.so.$driver_version libGLESv1_CM.so
ln -s libGLESv2.so.$driver_version libGLESv2.so
ln -s libGL.so.$driver_version libGL.so
ln -s libglx.so.$driver_version libglx.so
ln -s libnvcuvid.so.$driver_version libnvcuvid.so
ln -s libnvidia-cfg.so.$driver_version libnvidia-cfg.so
ln -s libnvidia-compiler.so.$driver_version libnvidia-compiler.so
ln -s libnvidia-eglcore.so.$driver_version libnvidia-eglcore.so
ln -s libnvidia-encode.so.$driver_version libnvidia-encode.so
ln -s libnvidia-fbc.so.$driver_version libnvidia-fbc.so
ln -s libnvidia-glcore.so.$driver_version libnvidia-glcore.so
ln -s libnvidia-glsi.so.$driver_version libnvidia-glsi.so
ln -s libnvidia-gtk2.so.$driver_version libnvidia-gtk2.so
ln -s libnvidia-gtk3.so.$driver_version libnvidia-gtk3.so
ln -s libnvidia-ifr.so.$driver_version libnvidia-ifr.so
ln -s libnvidia-ml.so.$driver_version libnvidia-ml.so
ln -s libnvidia-ml.so.$driver_version libnvidia-ml.so.1
ln -s libnvidia-opencl.so.$driver_version libnvidia-opencl.so
ln -s libnvidia-tls.so.$driver_version libnvidia-tls.so
ln -s libnvidia-wfb.so.$driver_version libnvidia-wfb.so
ln -s libvdpau_nvidia.so.$driver_version libvdpau_nvidia.so
ln -s libvdpau.so.$driver_version libvdpau.so
ln -s libvdpau_trace.so.$driver_version libvdpau_trace.so
ln -s libcuda.so.$driver_version libcuda.so.1
# APPS and SCRATCH
mkdir /apps
mkdir /scratch
%environment
source /opt/apps/lmod/7.7.7/init/profile
clearMT
export -f ml
export -f module
export -f clearMT
export LD_LIBRARY_PATH=/usr/local/cuda/lib64:/usr/local/cuda/extras/CUPTI/lib64:/usr/local/NVIDIA-Linux-x86_64-390.30:$LD_LIBRARY_PATH
export PATH=/usr/local/NVIDIA-Linux-x86_64-390.30:/usr/local/cuda/bin:$PATH
Bootstrap: docker
From: centos:latest
%post
yum -y update && yum -y upgrade
# CentOS repo
yum -y install python gcc make wget vim mc procps tcl gcc-c++ gcc-gfortran pkg-config acl acpid alsa-lib alsa-lib-devel amtu apr aspell at atk atk-devel attr audit audit-libs audit-libs-python authconfig autoconf autofs automake avahi-glib avahi-libs basesystem bash bc bind-libs bind-utils binutils binutils-devel bison bison-devel bluez-libs bridge-utils busybox bzip2 bzip2-devel bzip2-libs ca-certificates cairo cairo-devel c-ares ccid cdparanoia-libs centos-indexhtml centos-release checkpolicy chkconfig cloog-ppl compat-libcap1 compat-libstdc++-33 compat-readline5 ConsoleKit ConsoleKit-libs coolkey coreutils coreutils-libs cpio cpp cppunit cpupowerutils cpuspeed cracklib cracklib-dicts crash crda cronie cronie-anacron crontabs cryptsetup-luks cryptsetup-luks-libs cups cups-libs curl cvs cyrus-sasl cyrus-sasl-devel cyrus-sasl-gssapi cyrus-sasl-lib cyrus-sasl-plain dash db4 db4-cxx db4-devel db4-utils dbus dbus-devel dbus-glib dbus-glib-devel dbus-libs dbus-python dejavu-fonts-common dejavu-lgc-sans-mono-fonts dejavu-sans-mono-fonts desktop-file-utils device-mapper device-mapper-event device-mapper-event-libs device-mapper-libs device-mapper-multipath device-mapper-multipath-libs device-mapper-persistent-data diffutils dmidecode dmraid dmraid-events dmz-cursor-themes docbook-dtds docbook-style-dsssl docbook-style-xsl docbook-utils dos2unix dosfstools dracut dracut-kernel dracut-network dump e2fsprogs e2fsprogs-devel e2fsprogs-libs ed eggdbus eject elfutils-libelf elfutils-libelf-devel elfutils-libs emacs emacs-common environment-modules ethtool expat expat-devel expect file file-devel file-libs filesystem findutils finger fipscheck fipscheck-lib flac fontconfig fontconfig-devel fontpackages-filesystem foomatic foomatic-db foomatic-db-filesystem foomatic-db-ppds freeglut freeglut-devel freetype freetype-devel ftp fuse fuse-libs gamin gamin-python gawk gcc gcc-c++ gcc-gfortran GConf2 GConf2-devel gd gdb gdbm gdbm-devel gdk-pixbuf2 gdk-pixbuf2-devel genisoimage gettext gettext-devel gettext-libs ghostscript ghostscript-fonts giflib git glib2 glib2-devel glibc glibc-common glibc-debuginfo glibc-debuginfo-common glibc-devel glibc-headers glx-utils gmp gmp-devel gnome-icon-theme gnome-keyring gnome-keyring-devel gnome-themes gnome-vfs2 gnome-vfs2-devel gnupg2 gnuplot gnuplot-common gnutls gnutls-devel gperf gpgme gpm gpm-libs grep groff grub grubby gstreamer gstreamer-plugins-base gstreamer-tools gtk2 gtk2-devel gtk2-engines gtk-doc gzip hal hal-devel hal-info hal-libs hdparm hesiod hicolor-icon-theme hunspell hwdata hwloc hwloc-devel ilmbase ImageMagick indent info initscripts iproute iptables iptables-ipv6 iptstate iputils irqbalance iscsi-initiator-utils iso-codes iw jasper-libs jwhois kbd kbd-misc kernel kernel kernel-devel kernel-firmware kernel-headers keyutils keyutils-libs keyutils-libs-devel kpartx krb5-devel krb5-libs krb5-workstation ksh lcms-libs less lftp libacl libacl-devel libaio libart_lgpl libart_lgpl-devel libasyncns libattr libattr-devel libbasicobjects libblkid libbonobo libbonobo-devel libbonoboui libbonoboui-devel libcanberra libcanberra-gtk2 libcap libcap-devel libcap-ng libcgroup libcollection libcom_err libcom_err-devel libcroco libcroco-devel libcxgb3 libcxgb4 libdaemon libdhash libdrm libdrm-devel libedit libedit-devel libevent libexif libffi libfontenc libgcc libgcj libgcrypt libgcrypt-devel libgfortran libglade2 libglade2-devel libgnome libgnomecanvas libgnomecanvas-devel libgnome-devel libgomp libgpg-error libgpg-error-devel libgsf libgsf-devel libgssglue libgudev1 libhugetlbfs libibcm libibcm-devel libibverbs libibverbs-devel libibverbs-devel-static libibverbs-utils libICE libICE-devel libicu libIDL libIDL-devel libidn libidn-devel libini_config libipa_hbac libjpeg-turbo libjpeg-turbo-devel libldb libmcpp libmlx4 libmlx5 libmng libmng-devel libmthca libmthca-static libnetfilter_conntrack libnfnetlink libnih libnl libnl-devel libnotify libogg liboil libotf libpath_utils libpcap libpciaccess libpciaccess-devel libpng libpng-devel libproxy libproxy-bin libproxy-python libref_array librsvg2 librsvg2-devel libselinux libselinux-devel libselinux-python libselinux-utils libsemanage libsepol libsepol-devel libSM libSM-devel libsndfile libss libssh2 libsss_idmap libstdc++ libstdc++-devel libsysfs libsysfs-devel libtalloc libtasn1 libtasn1-devel libtdb libtevent libthai libtheora libtiff libtiff-devel libtirpc libtool-ltdl libudev libudev-devel libunistring libusb libusb1 libusb-devel libuser libutempter libuuid libvisual libvorbis libwmf libwmf-lite libwnck libX11 libX11-common libX11-devel libXau libXau-devel libXaw libXaw-devel libxcb libxcb-devel libXcomposite libXcomposite-devel libXcursor libXcursor-devel libXdamage libXdamage-devel libXdmcp libXdmcp-devel libXext libXext-devel libXfixes libXfixes-devel libXfont libXft libXft-devel libXi libXi-devel libXinerama libXinerama-devel libxkbfile libxml2 libxml2-devel libxml2-python libXmu libXmu-devel libXp libXpm libXpm-devel libXrandr libXrandr-devel libXrender libXrender-devel libXres libXScrnSaver libXScrnSaver-devel libxslt libxslt-devel libXt libXt-devel libXtst libXtst-devel libXv libXv-devel libXxf86misc libXxf86misc-devel libXxf86vm libXxf86vm-devel lm_sensors-libs lockdev logrotate lsof lvm2 lvm2-libs lynx lzo m17n-db m17n-db-datafiles m17n-lib m2crypto m4 mailcap mailx make MAKEDEV man man-pages mc mcpp mcstrans mdadm mesa-dri1-drivers mesa-dri-drivers mesa-dri-filesystem mesa-libGL mesa-libGL-devel mesa-libGLU mesa-libGLU-devel mesa-private-llvm mgetty microcode_ctl mingetty mkbootdisk mlocate module-init-tools mpfr mtools mtr mysql-libs nano nc ncurses ncurses-base ncurses-devel ncurses-libs net-snmp net-snmp-libs net-tools newt newt-python nfs-utils nfs-utils-lib nmap notification-daemon nscd nspr nspr-devel nss nss_db nss-devel nss-softokn nss-softokn-debuginfo nss-softokn-devel nss-softokn-freebl nss-softokn-freebl-devel nss-sysinit nss-tools nss-util nss-util-devel ntp ntpdate ntsysv OpenEXR-libs OpenIPMI OpenIPMI-libs openjade openjpeg-libs openldap openldap-devel openmotif openmotif22 opensp openssh openssh-clients openssh-server ORBit2 ORBit2-devel p11-kit p11-kit-trust pam pam-devel pam_krb5 pam_passwdqc pam_pkcs11 pango pango-devel paps paps-libs parted passwd patch pax pciutils pciutils-devel pciutils-libs pcmciautils pcp pcp-conf pcp-libs pcre pcsc-lite pcsc-lite-libs perf perl perl-AppConfig perl-Authen-SASL perl-Bit-Vector perl-Carp-Clan perl-CGI perl-Class-Singleton perl-Compress-Raw-Zlib perl-Compress-Zlib perl-Convert-ASN1 perl-Crypt-PasswdMD5 perl-Date-Calc perl-Date-Manip perl-DateTime perl-DBD-Pg perl-DBI perl-devel perl-Digest-HMAC perl-Digest-SHA1 perl-Error perl-ExtUtils-MakeMaker perl-ExtUtils-ParseXS perl-File-Which perl-Git perl-GSSAPI perl-HTML-Parser perl-HTML-Tagset perl-IO-Compress-Base perl-IO-Compress-Zlib perl-IO-Socket-SSL perl-JSON perl-LDAP perl-libs perl-libwww-perl perl-List-MoreUtils perl-Module-Pluggable perl-Net-LibIDN perl-Net-SSLeay perl-Net-Telnet perl-Params-Validate perl-PCP-PMDA perl-Pod-Escapes perl-Pod-Simple perl-SGMLSpm perl-Socket6 perl-String-CRC32 perl-TermReadKey perl-Test-Harness perl-Test-Simple perl-Text-Iconv perl-Time-HiRes perl-URI perl-version perl-WWW-Curl perl-XML-Filter-BufferText perl-XML-LibXML perl-XML-NamespaceSupport perl-XML-Parser perl-XML-SAX perl-XML-SAX-Writer perl-XML-Simple perl-YAML-Syck pinentry pinfo pixman pixman-devel pkgconfig plymouth plymouth-core-libs plymouth-scripts pm-utils policycoreutils polkit poppler poppler-data poppler-utils popt popt-devel portreserve postfix postgresql postgresql-devel postgresql-libs postgresql-odbc ppl ppp prelink procmail procps psacct psmisc pth pulseaudio-libs pycairo pycairo-devel pygobject2 pygobject2-codegen pygobject2-devel pygobject2-doc pygpgme pygtk2 pygtk2-codegen pygtk2-devel pygtk2-doc pyOpenSSL pytalloc python python-argparse python-devel python-iniparse python-libs python-pcp python-pycurl python-setuptools python-sssdconfig python-urlgrabber qt qt3 qt-sqlite qt-x11 quota rarian rarian-compat rdate rdma readahead readline readline-devel redhat-logos redhat-lsb redhat-lsb-compat redhat-lsb-core redhat-lsb-graphics redhat-lsb-printing redhat-menus redhat-rpm-config rmt rootfiles rpcbind rpm rpm-devel rpm-libs rpm-python rp-pppoe rrdtool rsh rsync ruby ruby-libs samba samba4-libs samba-common samba-winbind samba-winbind-clients screen SDL SDL-devel sed selinux-policy setserial setup setuptool sgml-common sgpio shadow-utils shared-mime-info slang smartmontools snappy sos sound-theme-freedesktop sqlite sqlite-devel sssd sssd-ad sssd-client sssd-common sssd-common-pac sssd-ipa sssd-krb5 sssd-krb5-common sssd-ldap sssd-proxy startup-notification startup-notification-devel strace stunnel sudo swig symlinks sysfsutils syslinux syslinux-nonlinux sysstat system-gnome-theme system-icon-theme systemtap-devel sysvinit-tools t1lib talk tar tcl tcl-devel tcpdump tcp_wrappers tcp_wrappers-libs tcsh telnet time tk tmpwatch traceroute tree tunctl tzdata udev udftools unix2dos unixODBC unixODBC-devel unzip upstart urw-fonts usbutils usermode ustr util-linux-ng vconfig vim-common vim-enhanced vim-filesystem vim-minimal virt-what wget which wireless-tools words wpa_supplicant xcb-util xdg-utils xerces-c xerces-c-devel xinetd xkeyboard-config xml-common xmlrpc-c xmlrpc-c-client xorg-x11-fonts-100dpi xorg-x11-fonts-75dpi xorg-x11-font-utils xorg-x11-proto-devel xorg-x11-server-common xorg-x11-server-utils xorg-x11-xauth xorg-x11-xkb-utils xterm xz xz-libs xz-lzma-compat ypbind yp-tools yum yum-metadata-parser yum-plugin-auto-update-debug-info yum-plugin-fastestmirror yum-plugin-priorities yum-plugin-security yum-plugin-versionlock yum-utils zip zlib zlib-devel
# Fedora repo
yum -y install bash-completion pigz tmux
yum -y groupinstall "Development Tools"
cd /tmp
# OpenMPI
wget https://www.open-mpi.org/software/ompi/v2.1/downloads/openmpi-2.1.1.tar.gz
tar xvf openmpi-2.1.1.tar.gz && cd openmpi-2.1.1
./configure --prefix=/usr/local
make -j 16
make install
# pip
curl -s -O https://bootstrap.pypa.io/get-pip.py
python get-pip.py
pip install setuptools python-graph-core python-graph-dot tabulate numpy scipy pandas wheel --upgrade
# lua
wget http://dl.fedoraproject.org/pub/epel/7/x86_64/Packages/l/lua-posix-32-2.el7.x86_64.rpm
wget http://dl.fedoraproject.org/pub/epel/7/x86_64/Packages/l/lua-filesystem-1.6.2-2.el7.x86_64.rpm
wget http://mirror.centos.org/centos/7/os/x86_64/Packages/lua-devel-5.1.4-15.el7.x86_64.rpm
wget http://dl.fedoraproject.org/pub/epel/7/x86_64/Packages/l/lua-bitop-1.0.2-3.el7.x86_64.rpm
rpm -ihv lua-devel-5.1.4-15.el7.x86_64.rpm
rpm -ihv lua-filesystem-1.6.2-2.el7.x86_64.rpm
rpm -ihv lua-bitop-1.0.2-3.el7.x86_64.rpm
rpm -ihv lua-posix-32-2.el7.x86_64.rpm
# Lmod
wget https://github.com/TACC/Lmod/archive/7.7.7.tar.gz
tar xvf 7.7.7.tar.gz
cd Lmod-7.7.7
./configure --prefix=/opt/apps
make install
# APPS and SCRATCH
mkdir /apps
mkdir /scratch
%environment
source /opt/apps/lmod/7.7.7/init/profile
clearMT
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib
export -f ml
export -f module
export -f clearMT
Bootstrap: docker
From: debian:jessie
%setup
cp /apps/easybuild/sources/n/NVIDIA/NVIDIA-Linux-x86_64-390.30.run /tmp
%post
apt -y update && apt -y upgrade
apt -y install python curl wget gcc g++ make vim mc libncurses-dev rsync tclsh lua5.2 liblua5.2 gfortran ssh
curl -s -O https://bootstrap.pypa.io/get-pip.py
python get-pip.py
pip install setuptools python-graph-core python-graph-dot tabulate numpy scipy pandas wheel --upgrade
wget https://github.com/luarocks/luarocks/archive/v2.4.2.tar.gz
tar xvf v2.4.2.tar.gz
cd luarocks-2.4.2
./configure
make build
make install
mkdir ~/.luarocks
echo "fs_use_modules = false" > ~/.luarocks/config.lua
luarocks install luaposix
luarocks install luafilesystem
LUAROCKS_PREFIX=/usr/local
export LUA_PATH="$LUAROCKS_PREFIX/share/lua/5.1/?.lua;$LUAROCKS_PREFIX/share/lua/5.1/?/init.lua;;"
export LUA_CPATH="$LUAROCKS_PREFIX/lib/lua/5.1/?.so;;"
echo "# !/bin/bash" > /bin/logger
echo "exit 0" >> /bin/logger
chmod +x /bin/logger
# Lmod
wget https://github.com/TACC/Lmod/archive/7.7.7.tar.gz
tar xvf 7.7.7.tar.gz
cd Lmod-7.7.7
./configure --prefix=/opt/apps
make install
# OpenMPI
wget https://www.open-mpi.org/software/ompi/v2.1/downloads/openmpi-2.1.1.tar.gz
tar xvf openmpi-2.1.1.tar.gz && cd openmpi-2.1.1
./configure --prefix=/usr/local
make -j 16
make install
# GPU
driver_version=390.30
driver="/tmp/NVIDIA-Linux-x86_64-$driver_version.run"
sh $driver -x
mv NVIDIA-Linux-x86_64-$driver_version /usr/local/
dir=/usr/local/NVIDIA-Linux-x86_64-$driver_version
cd $dir
ln -s libcuda.so.$driver_version libcuda.so
ln -s libEGL.so.$driver_version libEGL.so
ln -s libGLESv1_CM.so.$driver_version libGLESv1_CM.so
ln -s libGLESv2.so.$driver_version libGLESv2.so
ln -s libGL.so.$driver_version libGL.so
ln -s libglx.so.$driver_version libglx.so
ln -s libnvcuvid.so.$driver_version libnvcuvid.so
ln -s libnvidia-cfg.so.$driver_version libnvidia-cfg.so
ln -s libnvidia-compiler.so.$driver_version libnvidia-compiler.so
ln -s libnvidia-eglcore.so.$driver_version libnvidia-eglcore.so
ln -s libnvidia-encode.so.$driver_version libnvidia-encode.so
ln -s libnvidia-fbc.so.$driver_version libnvidia-fbc.so
ln -s libnvidia-glcore.so.$driver_version libnvidia-glcore.so
ln -s libnvidia-glsi.so.$driver_version libnvidia-glsi.so
ln -s libnvidia-gtk2.so.$driver_version libnvidia-gtk2.so
ln -s libnvidia-gtk3.so.$driver_version libnvidia-gtk3.so
ln -s libnvidia-ifr.so.$driver_version libnvidia-ifr.so
ln -s libnvidia-ml.so.$driver_version libnvidia-ml.so
ln -s libnvidia-ml.so.$driver_version libnvidia-ml.so.1
ln -s libnvidia-opencl.so.$driver_version libnvidia-opencl.so
ln -s libnvidia-tls.so.$driver_version libnvidia-tls.so
ln -s libnvidia-wfb.so.$driver_version libnvidia-wfb.so
ln -s libvdpau_nvidia.so.$driver_version libvdpau_nvidia.so
ln -s libvdpau.so.$driver_version libvdpau.so
ln -s libvdpau_trace.so.$driver_version libvdpau_trace.so
ln -s libcuda.so.$driver_version libcuda.so.1
cd /bin
rm sh && ln -s /bin/bash sh
# APPS and SCRATCH
mkdir /apps
mkdir /scratch
%environment
source /opt/apps/lmod/7.7.7/init/profile
clearMT
export -f ml
export -f module
export -f clearMT
export LD_LIBRARY_PATH=/usr/local/cuda/lib64:/usr/local/cuda/extras/CUPTI/lib64:/usr/local/NVIDIA-Linux-x86_64-390.30:$LD_LIBRARY_PATH
export PATH=/usr/local/NVIDIA-Linux-x86_64-390.30:/usr/local/cuda/bin:$PATH
......@@ -27,24 +27,30 @@ echo "# !/bin/bash" > /bin/logger
echo "exit 0" >> /bin/logger
chmod +x /bin/logger
# Lmod
wget https://github.com/TACC/Lmod/archive/7.7.7.tar.gz
tar xvf 7.7.7.tar.gz
cd Lmod-7.7.7
./configure --prefix=/opt/apps
make install
# OpenMPI
wget https://www.open-mpi.org/software/ompi/v2.1/downloads/openmpi-2.1.1.tar.gz
tar xvf openmpi-2.1.1.tar.gz && cd openmpi-2.1.1
./configure --prefix=/usr/local
make -j 14
make -j 16
make install
cd /bin
rm sh && ln -s /bin/bash sh
rm /tmp/get-pip.py /tmp/openmpi-2.1.0.tar.gz -rf
# APPS and SCRATCH
mkdir /apps
mkdir /scratch
%environment
. /apps/all/Lmod/7.7.7/lmod/lmod/init/profile
ml purge --force
source /opt/apps/lmod/7.7.7/init/profile
clearMT
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib
export -f ml
export -f module
......
Bootstrap: docker
From: ubuntu:latest
%setup
cp /apps/easybuild/sources/n/NVIDIA/NVIDIA-Linux-x86_64-390.30.run /tmp
%post
apt -y update && apt -y upgrade
apt -y install python curl wget gcc g++ make vim mc libncurses-dev rsync tclsh lua5.2 liblua5.2 gfortran ssh
curl -s -O https://bootstrap.pypa.io/get-pip.py
python get-pip.py
pip install setuptools python-graph-core python-graph-dot tabulate numpy scipy pandas wheel --upgrade
wget https://github.com/luarocks/luarocks/archive/v2.4.2.tar.gz
tar xvf v2.4.2.tar.gz
cd luarocks-2.4.2
./configure
make build
make install
mkdir ~/.luarocks
echo "fs_use_modules = false" > ~/.luarocks/config.lua
luarocks install luaposix
luarocks install luafilesystem
LUAROCKS_PREFIX=/usr/local
export LUA_PATH="$LUAROCKS_PREFIX/share/lua/5.1/?.lua;$LUAROCKS_PREFIX/share/lua/5.1/?/init.lua;;"
export LUA_CPATH="$LUAROCKS_PREFIX/lib/lua/5.1/?.so;;"
echo "# !/bin/bash" > /bin/logger
echo "exit 0" >> /bin/logger
chmod +x /bin/logger
# Lmod
wget https://github.com/TACC/Lmod/archive/7.7.7.tar.gz
tar xvf 7.7.7.tar.gz
cd Lmod-7.7.7
./configure --prefix=/opt/apps
make install
# OpenMPI
wget https://www.open-mpi.org/software/ompi/v2.1/downloads/openmpi-2.1.1.tar.gz
tar xvf openmpi-2.1.1.tar.gz && cd openmpi-2.1.1
./configure --prefix=/usr/local
make -j 16
make install
# GPU
driver_version=390.30
driver="/tmp/NVIDIA-Linux-x86_64-$driver_version.run"
sh $driver -x
mv NVIDIA-Linux-x86_64-$driver_version /usr/local/
dir=/usr/local/NVIDIA-Linux-x86_64-$driver_version
cd $dir
ln -s libcuda.so.$driver_version libcuda.so
ln -s libEGL.so.$driver_version libEGL.so
ln -s libGLESv1_CM.so.$driver_version libGLESv1_CM.so
ln -s libGLESv2.so.$driver_version libGLESv2.so
ln -s libGL.so.$driver_version libGL.so
ln -s libglx.so.$driver_version libglx.so
ln -s libnvcuvid.so.$driver_version libnvcuvid.so
ln -s libnvidia-cfg.so.$driver_version libnvidia-cfg.so
ln -s libnvidia-compiler.so.$driver_version libnvidia-compiler.so
ln -s libnvidia-eglcore.so.$driver_version libnvidia-eglcore.so
ln -s libnvidia-encode.so.$driver_version libnvidia-encode.so
ln -s libnvidia-fbc.so.$driver_version libnvidia-fbc.so
ln -s libnvidia-glcore.so.$driver_version libnvidia-glcore.so
ln -s libnvidia-glsi.so.$driver_version libnvidia-glsi.so
ln -s libnvidia-gtk2.so.$driver_version libnvidia-gtk2.so
ln -s libnvidia-gtk3.so.$driver_version libnvidia-gtk3.so
ln -s libnvidia-ifr.so.$driver_version libnvidia-ifr.so
ln -s libnvidia-ml.so.$driver_version libnvidia-ml.so
ln -s libnvidia-ml.so.$driver_version libnvidia-ml.so.1
ln -s libnvidia-opencl.so.$driver_version libnvidia-opencl.so
ln -s libnvidia-tls.so.$driver_version libnvidia-tls.so
ln -s libnvidia-wfb.so.$driver_version libnvidia-wfb.so
ln -s libvdpau_nvidia.so.$driver_version libvdpau_nvidia.so
ln -s libvdpau.so.$driver_version libvdpau.so
ln -s libvdpau_trace.so.$driver_version libvdpau_trace.so
ln -s libcuda.so.$driver_version libcuda.so.1
# APPS and SCRATCH
mkdir /apps
mkdir /scratch
cd /bin
rm sh && ln -s /bin/bash sh
%environment
source /opt/apps/lmod/7.7.7/init/profile
clearMT
export -f ml
export -f module
export -f clearMT
export LD_LIBRARY_PATH=/usr/local/cuda/lib64:/usr/local/cuda/extras/CUPTI/lib64:/usr/local/NVIDIA-Linux-x86_64-390.30:$LD_LIBRARY_PATH
export PATH=/usr/local/NVIDIA-Linux-x86_64-390.30:/usr/local/cuda/bin:$PATH
......@@ -27,21 +27,30 @@ echo "# !/bin/bash" > /bin/logger
echo "exit 0" >> /bin/logger
chmod +x /bin/logger
# Lmod
wget https://github.com/TACC/Lmod/archive/7.7.7.tar.gz
tar xvf 7.7.7.tar.gz
cd Lmod-7.7.7
./configure --prefix=/opt/apps
make install
# OpenMPI
wget https://www.open-mpi.org/software/ompi/v2.1/downloads/openmpi-2.1.1.tar.gz
tar xvf openmpi-2.1.1.tar.gz && cd openmpi-2.1.1
./configure --prefix=/usr/local
make -j 14
make -j 16
make install
# APPS and SCRATCH
mkdir /apps
mkdir /scratch
cd /bin
rm sh && ln -s /bin/bash sh
rm /tmp/get-pip.py /tmp/openmpi-2.1.0.tar.gz -rf
%environment
. /apps/all/Lmod/7.7.7/lmod/lmod/init/profile
ml purge --force
source /opt/apps/lmod/7.7.7/init/profile
clearMT
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib
export -f ml
export -f module
......
......@@ -10,19 +10,15 @@ yum -y install python gcc make wget vim mc procps tcl gcc-c++ gcc-gfortran pkg-c
# Fedora repo
yum -y install bash-completion pigz tmux
# OpenHPC
yum -y install https://github.com/openhpc/ohpc/releases/download/v1.3.GA/ohpc-release-1.3-1.el7.x86_64.rpm
yum -y install openmpi openblas lapack htop
yum -y groupinstall "Development Tools"
cd /tmp
# OpenMPI
wget https://www.open-mpi.org/software/ompi/v2.1/downloads/openmpi-2.1.0.tar.gz
tar xvf openmpi-2.1.0.tar.gz && cd openmpi-2.1.0
wget https://www.open-mpi.org/software/ompi/v2.1/downloads/openmpi-2.1.1.tar.gz
tar xvf openmpi-2.1.1.tar.gz && cd openmpi-2.1.1
./configure --prefix=/usr/local
make -j 14
make -j 16
make install
# pip
......@@ -42,12 +38,21 @@ rpm -ihv lua-filesystem-1.6.2-2.el7.x86_64.rpm
rpm -ihv lua-bitop-1.0.2-3.el7.x86_64.rpm
rpm -ihv lua-posix-32-2.el7.x86_64.rpm
# Lmod
wget https://github.com/TACC/Lmod/archive/7.7.7.tar.gz
tar xvf 7.7.7.tar.gz
cd Lmod-7.7.7
./configure --prefix=/opt/apps
make install
# APPS and SCRATCH
mkdir /apps
mkdir /scratch
%environment
. /apps/all/Lmod/7.2.2/lmod/lmod/init/profile
ml purge --force
source /opt/apps/lmod/7.7.7/init/profile
clearMT
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib
export -f ml
export -f module
export -f clearMT
Bootstrap: docker
From: centos:latest
%setup
cp /apps/easybuild/sources/n/NVIDIA/NVIDIA-Linux-x86_64-390.30.run /tmp
%post
yum -y update && yum -y upgrade
# CentOS repo
yum -y install python gcc make wget vim mc procps tcl gcc-c++ gcc-gfortran pkg-config acl acpid alsa-lib alsa-lib-devel amtu apr aspell at atk atk-devel attr audit audit-libs audit-libs-python authconfig autoconf autofs automake avahi-glib avahi-libs basesystem bash bc bind-libs bind-utils binutils binutils-devel bison bison-devel bluez-libs bridge-utils busybox bzip2 bzip2-devel bzip2-libs ca-certificates cairo cairo-devel c-ares ccid cdparanoia-libs centos-indexhtml centos-release checkpolicy chkconfig cloog-ppl compat-libcap1 compat-libstdc++-33 compat-readline5 ConsoleKit ConsoleKit-libs coolkey coreutils coreutils-libs cpio cpp cppunit cpupowerutils cpuspeed cracklib cracklib-dicts crash crda cronie cronie-anacron crontabs cryptsetup-luks cryptsetup-luks-libs cups cups-libs curl cvs cyrus-sasl cyrus-sasl-devel cyrus-sasl-gssapi cyrus-sasl-lib cyrus-sasl-plain dash db4 db4-cxx db4-devel db4-utils dbus dbus-devel dbus-glib dbus-glib-devel dbus-libs dbus-python dejavu-fonts-common dejavu-lgc-sans-mono-fonts dejavu-sans-mono-fonts desktop-file-utils device-mapper device-mapper-event device-mapper-event-libs device-mapper-libs device-mapper-multipath device-mapper-multipath-libs device-mapper-persistent-data diffutils dmidecode dmraid dmraid-events dmz-cursor-themes docbook-dtds docbook-style-dsssl docbook-style-xsl docbook-utils dos2unix dosfstools dracut dracut-kernel dracut-network dump e2fsprogs e2fsprogs-devel e2fsprogs-libs ed eggdbus eject elfutils-libelf elfutils-libelf-devel elfutils-libs emacs emacs-common environment-modules ethtool expat expat-devel expect file file-devel file-libs filesystem findutils finger fipscheck fipscheck-lib flac fontconfig fontconfig-devel fontpackages-filesystem foomatic foomatic-db foomatic-db-filesystem foomatic-db-ppds freeglut freeglut-devel freetype freetype-devel ftp fuse fuse-libs gamin gamin-python gawk gcc gcc-c++ gcc-gfortran GConf2 GConf2-devel gd gdb gdbm gdbm-devel gdk-pixbuf2 gdk-pixbuf2-devel genisoimage gettext gettext-devel gettext-libs ghostscript ghostscript-fonts giflib git glib2 glib2-devel glibc glibc-common glibc-debuginfo glibc-debuginfo-common glibc-devel glibc-headers glx-utils gmp gmp-devel gnome-icon-theme gnome-keyring gnome-keyring-devel gnome-themes gnome-vfs2 gnome-vfs2-devel gnupg2 gnuplot gnuplot-common gnutls gnutls-devel gperf gpgme gpm gpm-libs grep groff grub grubby gstreamer gstreamer-plugins-base gstreamer-tools gtk2 gtk2-devel gtk2-engines gtk-doc gzip hal hal-devel hal-info hal-libs hdparm hesiod hicolor-icon-theme hunspell hwdata hwloc hwloc-devel ilmbase ImageMagick indent info initscripts iproute iptables iptables-ipv6 iptstate iputils irqbalance iscsi-initiator-utils iso-codes iw jasper-libs jwhois kbd kbd-misc kernel kernel kernel-devel kernel-firmware kernel-headers keyutils keyutils-libs keyutils-libs-devel kpartx krb5-devel krb5-libs krb5-workstation ksh lcms-libs less lftp libacl libacl-devel libaio libart_lgpl libart_lgpl-devel libasyncns libattr libattr-devel libbasicobjects libblkid libbonobo libbonobo-devel libbonoboui libbonoboui-devel libcanberra libcanberra-gtk2 libcap libcap-devel libcap-ng libcgroup libcollection libcom_err libcom_err-devel libcroco libcroco-devel libcxgb3 libcxgb4 libdaemon libdhash libdrm libdrm-devel libedit libedit-devel libevent libexif libffi libfontenc libgcc libgcj libgcrypt libgcrypt-devel libgfortran libglade2 libglade2-devel libgnome libgnomecanvas libgnomecanvas-devel libgnome-devel libgomp libgpg-error libgpg-error-devel libgsf libgsf-devel libgssglue libgudev1 libhugetlbfs libibcm libibcm-devel libibverbs libibverbs-devel libibverbs-devel-static libibverbs-utils libICE libICE-devel libicu libIDL libIDL-devel libidn libidn-devel libini_config libipa_hbac libjpeg-turbo libjpeg-turbo-devel libldb libmcpp libmlx4 libmlx5 libmng libmng-devel libmthca libmthca-static libnetfilter_conntrack libnfnetlink libnih libnl libnl-devel libnotify libogg liboil libotf libpath_utils libpcap libpciaccess libpciaccess-devel libpng libpng-devel libproxy libproxy-bin libproxy-python libref_array librsvg2 librsvg2-devel libselinux libselinux-devel libselinux-python libselinux-utils libsemanage libsepol libsepol-devel libSM libSM-devel libsndfile libss libssh2 libsss_idmap libstdc++ libstdc++-devel libsysfs libsysfs-devel libtalloc libtasn1 libtasn1-devel libtdb libtevent libthai libtheora libtiff libtiff-devel libtirpc libtool-ltdl libudev libudev-devel libunistring libusb libusb1 libusb-devel libuser libutempter libuuid libvisual libvorbis libwmf libwmf-lite libwnck libX11 libX11-common libX11-devel libXau libXau-devel libXaw libXaw-devel libxcb libxcb-devel libXcomposite libXcomposite-devel libXcursor libXcursor-devel libXdamage libXdamage-devel libXdmcp libXdmcp-devel libXext libXext-devel libXfixes libXfixes-devel libXfont libXft libXft-devel libXi libXi-devel libXinerama libXinerama-devel libxkbfile libxml2 libxml2-devel libxml2-python libXmu libXmu-devel libXp libXpm libXpm-devel libXrandr libXrandr-devel libXrender libXrender-devel libXres libXScrnSaver libXScrnSaver-devel libxslt libxslt-devel libXt libXt-devel libXtst libXtst-devel libXv libXv-devel libXxf86misc libXxf86misc-devel libXxf86vm libXxf86vm-devel lm_sensors-libs lockdev logrotate lsof lvm2 lvm2-libs lynx lzo m17n-db m17n-db-datafiles m17n-lib m2crypto m4 mailcap mailx make MAKEDEV man man-pages mc mcpp mcstrans mdadm mesa-dri1-drivers mesa-dri-drivers mesa-dri-filesystem mesa-libGL mesa-libGL-devel mesa-libGLU mesa-libGLU-devel mesa-private-llvm mgetty microcode_ctl mingetty mkbootdisk mlocate module-init-tools mpfr mtools mtr mysql-libs nano nc ncurses ncurses-base ncurses-devel ncurses-libs net-snmp net-snmp-libs net-tools newt newt-python nfs-utils nfs-utils-lib nmap notification-daemon nscd nspr nspr-devel nss nss_db nss-devel nss-softokn nss-softokn-debuginfo nss-softokn-devel nss-softokn-freebl nss-softokn-freebl-devel nss-sysinit nss-tools nss-util nss-util-devel ntp ntpdate ntsysv OpenEXR-libs OpenIPMI OpenIPMI-libs openjade openjpeg-libs openldap openldap-devel openmotif openmotif22 opensp openssh openssh-clients openssh-server ORBit2 ORBit2-devel p11-kit p11-kit-trust pam pam-devel pam_krb5 pam_passwdqc pam_pkcs11 pango pango-devel paps paps-libs parted passwd patch pax pciutils pciutils-devel pciutils-libs pcmciautils pcp pcp-conf pcp-libs pcre pcsc-lite pcsc-lite-libs perf perl perl-AppConfig perl-Authen-SASL perl-Bit-Vector perl-Carp-Clan perl-CGI perl-Class-Singleton perl-Compress-Raw-Zlib perl-Compress-Zlib perl-Convert-ASN1 perl-Crypt-PasswdMD5 perl-Date-Calc perl-Date-Manip perl-DateTime perl-DBD-Pg perl-DBI perl-devel perl-Digest-HMAC perl-Digest-SHA1 perl-Error perl-ExtUtils-MakeMaker perl-ExtUtils-ParseXS perl-File-Which perl-Git perl-GSSAPI perl-HTML-Parser perl-HTML-Tagset perl-IO-Compress-Base perl-IO-Compress-Zlib perl-IO-Socket-SSL perl-JSON perl-LDAP perl-libs perl-libwww-perl perl-List-MoreUtils perl-Module-Pluggable perl-Net-LibIDN perl-Net-SSLeay perl-Net-Telnet perl-Params-Validate perl-PCP-PMDA perl-Pod-Escapes perl-Pod-Simple perl-SGMLSpm perl-Socket6 perl-String-CRC32 perl-TermReadKey perl-Test-Harness perl-Test-Simple perl-Text-Iconv perl-Time-HiRes perl-URI perl-version perl-WWW-Curl perl-XML-Filter-BufferText perl-XML-LibXML perl-XML-NamespaceSupport perl-XML-Parser perl-XML-SAX perl-XML-SAX-Writer perl-XML-Simple perl-YAML-Syck pinentry pinfo pixman pixman-devel pkgconfig plymouth plymouth-core-libs plymouth-scripts pm-utils policycoreutils polkit poppler poppler-data poppler-utils popt popt-devel portreserve postfix postgresql postgresql-devel postgresql-libs postgresql-odbc ppl ppp prelink procmail procps psacct psmisc pth pulseaudio-libs pycairo pycairo-devel pygobject2 pygobject2-codegen pygobject2-devel pygobject2-doc pygpgme pygtk2 pygtk2-codegen pygtk2-devel pygtk2-doc pyOpenSSL pytalloc python python-argparse python-devel python-iniparse python-libs python-pcp python-pycurl python-setuptools python-sssdconfig python-urlgrabber qt qt3 qt-sqlite qt-x11 quota rarian rarian-compat rdate rdma readahead readline readline-devel redhat-logos redhat-lsb redhat-lsb-compat redhat-lsb-core redhat-lsb-graphics redhat-lsb-printing redhat-menus redhat-rpm-config rmt rootfiles rpcbind rpm rpm-devel rpm-libs rpm-python rp-pppoe rrdtool rsh rsync ruby ruby-libs samba samba4-libs samba-common samba-winbind samba-winbind-clients screen SDL SDL-devel sed selinux-policy setserial setup setuptool sgml-common sgpio shadow-utils shared-mime-info slang smartmontools snappy sos sound-theme-freedesktop sqlite sqlite-devel sssd sssd-ad sssd-client sssd-common sssd-common-pac sssd-ipa sssd-krb5 sssd-krb5-common sssd-ldap sssd-proxy startup-notification startup-notification-devel strace stunnel sudo swig symlinks sysfsutils syslinux syslinux-nonlinux sysstat system-gnome-theme system-icon-theme systemtap-devel sysvinit-tools t1lib talk tar tcl tcl-devel tcpdump tcp_wrappers tcp_wrappers-libs tcsh telnet time tk tmpwatch traceroute tree tunctl tzdata udev udftools unix2dos unixODBC unixODBC-devel unzip upstart urw-fonts usbutils usermode ustr util-linux-ng vconfig vim-common vim-enhanced vim-filesystem vim-minimal virt-what wget which wireless-tools words wpa_supplicant xcb-util xdg-utils xerces-c xerces-c-devel xinetd xkeyboard-config xml-common xmlrpc-c xmlrpc-c-client xorg-x11-fonts-100dpi xorg-x11-fonts-75dpi xorg-x11-font-utils xorg-x11-proto-devel xorg-x11-server-common xorg-x11-server-utils xorg-x11-xauth xorg-x11-xkb-utils xterm xz xz-libs xz-lzma-compat ypbind yp-tools yum yum-metadata-parser yum-plugin-auto-update-debug-info yum-plugin-fastestmirror yum-plugin-priorities yum-plugin-security yum-plugin-versionlock yum-utils zip zlib zlib-devel
# Fedora repo
yum -y install bash-completion pigz tmux
yum -y groupinstall "Development Tools"
cd /tmp
# OpenMPI
wget https://www.open-mpi.org/software/ompi/v2.1/downloads/openmpi-2.1.1.tar.gz
tar xvf openmpi-2.1.1.tar.gz && cd openmpi-2.1.1
./configure --prefix=/usr/local
make -j 16
make install
# pip
curl -s -O https://bootstrap.pypa.io/get-pip.py
python get-pip.py
pip install setuptools python-graph-core python-graph-dot tabulate numpy scipy pandas wheel --upgrade
# lua
wget http://dl.fedoraproject.org/pub/epel/7/x86_64/Packages/l/lua-posix-32-2.el7.x86_64.rpm
wget http://dl.fedoraproject.org/pub/epel/7/x86_64/Packages/l/lua-filesystem-1.6.2-2.el7.x86_64.rpm
wget http://mirror.centos.org/centos/7/os/x86_64/Packages/lua-devel-5.1.4-15.el7.x86_64.rpm
wget http://dl.fedoraproject.org/pub/epel/7/x86_64/Packages/l/lua-bitop-1.0.2-3.el7.x86_64.rpm
rpm -ihv lua-devel-5.1.4-15.el7.x86_64.rpm
rpm -ihv lua-filesystem-1.6.2-2.el7.x86_64.rpm
rpm -ihv lua-bitop-1.0.2-3.el7.x86_64.rpm
rpm -ihv lua-posix-32-2.el7.x86_64.rpm
# Lmod
wget https://github.com/TACC/Lmod/archive/7.7.7.tar.gz
tar xvf 7.7.7.tar.gz
cd Lmod-7.7.7
./configure --prefix=/opt/apps
make install
# GPU
driver_version=390.30
driver="/tmp/NVIDIA-Linux-x86_64-$driver_version.run"
sh $driver -x
mv NVIDIA-Linux-x86_64-$driver_version /usr/local/
dir=/usr/local/NVIDIA-Linux-x86_64-$driver_version
cd $dir
ln -s libcuda.so.$driver_version libcuda.so
ln -s libEGL.so.$driver_version libEGL.so
ln -s libGLESv1_CM.so.$driver_version libGLESv1_CM.so
ln -s libGLESv2.so.$driver_version libGLESv2.so
ln -s libGL.so.$driver_version libGL.so
ln -s libglx.so.$driver_version libglx.so
ln -s libnvcuvid.so.$driver_version libnvcuvid.so
ln -s libnvidia-cfg.so.$driver_version libnvidia-cfg.so
ln -s libnvidia-compiler.so.$driver_version libnvidia-compiler.so
ln -s libnvidia-eglcore.so.$driver_version libnvidia-eglcore.so
ln -s libnvidia-encode.so.$driver_version libnvidia-encode.so
ln -s libnvidia-fbc.so.$driver_version libnvidia-fbc.so
ln -s libnvidia-glcore.so.$driver_version libnvidia-glcore.so
ln -s libnvidia-glsi.so.$driver_version libnvidia-glsi.so
ln -s libnvidia-gtk2.so.$driver_version libnvidia-gtk2.so
ln -s libnvidia-gtk3.so.$driver_version libnvidia-gtk3.so
ln -s libnvidia-ifr.so.$driver_version libnvidia-ifr.so
ln -s libnvidia-ml.so.$driver_version libnvidia-ml.so
ln -s libnvidia-ml.so.$driver_version libnvidia-ml.so.1
ln -s libnvidia-opencl.so.$driver_version libnvidia-opencl.so
ln -s libnvidia-tls.so.$driver_version libnvidia-tls.so
ln -s libnvidia-wfb.so.$driver_version libnvidia-wfb.so
ln -s libvdpau_nvidia.so.$driver_version libvdpau_nvidia.so
ln -s libvdpau.so.$driver_version libvdpau.so
ln -s libvdpau_trace.so.$driver_version libvdpau_trace.so
ln -s libcuda.so.$driver_version libcuda.so.1
# APPS and SCRATCH
mkdir /apps
mkdir /scratch
%environment
source /opt/apps/lmod/7.7.7/init/profile
clearMT
export -f ml
export -f module
export -f clearMT
export LD_LIBRARY_PATH=/usr/local/cuda/lib64:/usr/local/cuda/extras/CUPTI/lib64:/usr/local/NVIDIA-Linux-x86_64-390.30:$LD_LIBRARY_PATH
export PATH=/usr/local/NVIDIA-Linux-x86_64-390.30:/usr/local/cuda/bin:$PATH
......@@ -27,24 +27,30 @@ echo "# !/bin/bash" > /bin/logger
echo "exit 0" >> /bin/logger
chmod +x /bin/logger
# Lmod
wget https://github.com/TACC/Lmod/archive/7.7.7.tar.gz
tar xvf 7.7.7.tar.gz
cd Lmod-7.7.7
./configure --prefix=/opt/apps
make install
# OpenMPI
wget https://www.open-mpi.org/software/ompi/v2.1/downloads/openmpi-2.1.1.tar.gz
tar xvf openmpi-2.1.1.tar.gz && cd openmpi-2.1.1
./configure --prefix=/usr/local
make -j 14
make -j 16
make install
cd /bin
rm sh && ln -s /bin/bash sh
rm /tmp/get-pip.py /tmp/openmpi-2.1.0.tar.gz -rf
# APPS and SCRATCH
mkdir /apps
mkdir /scratch
%environment
. /apps/all/Lmod/7.7.7/lmod/lmod/init/profile
ml purge --force
source /opt/apps/lmod/7.7.7/init/profile
clearMT
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib
export -f ml
export -f module
......
Bootstrap: docker
From: debian:jessie
%setup
cp /apps/easybuild/sources/n/NVIDIA/NVIDIA-Linux-x86_64-390.30.run /tmp
%post
apt -y update && apt -y upgrade
apt -y install python curl wget gcc g++ make vim mc libncurses-dev rsync tclsh lua5.2 liblua5.2 gfortran ssh
curl -s -O https://bootstrap.pypa.io/get-pip.py
python get-pip.py
pip install setuptools python-graph-core python-graph-dot tabulate numpy scipy pandas wheel --upgrade
wget https://github.com/luarocks/luarocks/archive/v2.4.2.tar.gz
tar xvf v2.4.2.tar.gz
cd luarocks-2.4.2
./configure
make build
make install
mkdir ~/.luarocks
echo "fs_use_modules = false" > ~/.luarocks/config.lua
luarocks install luaposix
luarocks install luafilesystem
LUAROCKS_PREFIX=/usr/local
export LUA_PATH="$LUAROCKS_PREFIX/share/lua/5.1/?.lua;$LUAROCKS_PREFIX/share/lua/5.1/?/init.lua;;"
export LUA_CPATH="$LUAROCKS_PREFIX/lib/lua/5.1/?.so;;"
echo "# !/bin/bash" > /bin/logger
echo "exit 0" >> /bin/logger
chmod +x /bin/logger
# Lmod
wget https://github.com/TACC/Lmod/archive/7.7.7.tar.gz
tar xvf 7.7.7.tar.gz
cd Lmod-7.7.7
./configure --prefix=/opt/apps
make install
# OpenMPI
wget https://www.open-mpi.org/software/ompi/v2.1/downloads/openmpi-2.1.1.tar.gz
tar xvf openmpi-2.1.1.tar.gz && cd openmpi-2.1.1
./configure --prefix=/usr/local
make -j 16
make install
# GPU
driver_version=390.30
driver="/tmp/NVIDIA-Linux-x86_64-$driver_version.run"
sh $driver -x
mv NVIDIA-Linux-x86_64-$driver_version /usr/local/
dir=/usr/local/NVIDIA-Linux-x86_64-$driver_version
cd $dir
ln -s libcuda.so.$driver_version libcuda.so
ln -s libEGL.so.$driver_version libEGL.so
ln -s libGLESv1_CM.so.$driver_version libGLESv1_CM.so
ln -s libGLESv2.so.$driver_version libGLESv2.so
ln -s libGL.so.$driver_version libGL.so
ln -s libglx.so.$driver_version libglx.so
ln -s libnvcuvid.so.$driver_version libnvcuvid.so
ln -s libnvidia-cfg.so.$driver_version libnvidia-cfg.so
ln -s libnvidia-compiler.so.$driver_version libnvidia-compiler.so
ln -s libnvidia-eglcore.so.$driver_version libnvidia-eglcore.so
ln -s libnvidia-encode.so.$driver_version libnvidia-encode.so
ln -s libnvidia-fbc.so.$driver_version libnvidia-fbc.so
ln -s libnvidia-glcore.so.$driver_version libnvidia-glcore.so
ln -s libnvidia-glsi.so.$driver_version libnvidia-glsi.so
ln -s libnvidia-gtk2.so.$driver_version libnvidia-gtk2.so
ln -s libnvidia-gtk3.so.$driver_version libnvidia-gtk3.so
ln -s libnvidia-ifr.so.$driver_version libnvidia-ifr.so
ln -s libnvidia-ml.so.$driver_version libnvidia-ml.so
ln -s libnvidia-ml.so.$driver_version libnvidia-ml.so.1
ln -s libnvidia-opencl.so.$driver_version libnvidia-opencl.so
ln -s libnvidia-tls.so.$driver_version libnvidia-tls.so
ln -s libnvidia-wfb.so.$driver_version libnvidia-wfb.so
ln -s libvdpau_nvidia.so.$driver_version libvdpau_nvidia.so
ln -s libvdpau.so.$driver_version libvdpau.so
ln -s libvdpau_trace.so.$driver_version libvdpau_trace.so
ln -s libcuda.so.$driver_version libcuda.so.1
cd /bin
rm sh && ln -s /bin/bash sh
# APPS and SCRATCH
mkdir /apps
mkdir /scratch
%environment
source /opt/apps/lmod/7.7.7/init/profile
clearMT
export -f ml
export -f module
export -f clearMT
export LD_LIBRARY_PATH=/usr/local/cuda/lib64:/usr/local/cuda/extras/CUPTI/lib64:/usr/local/NVIDIA-Linux-x86_64-390.30:$LD_LIBRARY_PATH
export PATH=/usr/local/NVIDIA-Linux-x86_64-390.30:/usr/local/cuda/bin:$PATH
......@@ -27,21 +27,30 @@ echo "# !/bin/bash" > /bin/logger
echo "exit 0" >> /bin/logger
chmod +x /bin/logger
# Lmod
wget https://github.com/TACC/Lmod/archive/7.7.7.tar.gz
tar xvf 7.7.7.tar.gz
cd Lmod-7.7.7
./configure --prefix=/opt/apps
make install
# OpenMPI
wget https://www.open-mpi.org/software/ompi/v2.1/downloads/openmpi-2.1.1.tar.gz
tar xvf openmpi-2.1.1.tar.gz && cd openmpi-2.1.1
./configure --prefix=/usr/local
make -j 14
make -j 16
make install
# APPS and SCRATCH
mkdir /apps
mkdir /scratch
cd /bin
rm sh && ln -s /bin/bash sh
rm /tmp/get-pip.py /tmp/openmpi-2.1.0.tar.gz -rf
%environment
. /apps/all/Lmod/7.7.7/lmod/lmod/init/profile
ml purge --force
source /opt/apps/lmod/7.7.7/init/profile
clearMT
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib
export -f ml
export -f module
......
Bootstrap: docker
From: ubuntu:latest
%setup
cp /apps/easybuild/sources/n/NVIDIA/NVIDIA-Linux-x86_64-390.30.run /tmp
%post
apt -y update && apt -y upgrade
apt -y install python curl wget gcc g++ make vim mc libncurses-dev rsync tclsh lua5.2 liblua5.2 gfortran ssh
curl -s -O https://bootstrap.pypa.io/get-pip.py
python get-pip.py
pip install setuptools python-graph-core python-graph-dot tabulate numpy scipy pandas wheel --upgrade
wget https://github.com/luarocks/luarocks/archive/v2.4.2.tar.gz
tar xvf v2.4.2.tar.gz
cd luarocks-2.4.2
./configure
make build
make install