Commit 085fb398 authored by Lukáš Krupčík's avatar Lukáš Krupčík

zmena js

parent a2a09b1e
| Name | Version |
| ---- | ------: |
| modulename | 1.0.1 |
\ No newline at end of file
# List of Available Modules
## Core
|Module|Description|Available versions|
|--|--|--|
|**lmod**|&nbsp;|<nobr>7.2.2.lua</nobr>|
|**settarg**|&nbsp;|<nobr>7.2.2.lua</nobr>|
## All
|Module|Description|Available versions|
|--|--|--|
|**[almost](http://www-almost.ch.cam.ac.uk/site)**|all atom molecular simulation toolkit - is a fast and flexible molecular modeling environment that provides powerful and efficient algorithms for molecular simulation, homology modeling, de novo design and ab-initio calculations.|<nobr>2.1.0-foss-2015g</br>2.1.0-foss-2016a</nobr>|
|**[Amber](http://ambermd.org)**|A set of molecular mechanical force fields for the simulation of biomolecules|<nobr>14</nobr>|
|**[APR](http://apr.apache.org/)**|Apache Portable Runtime (APR) libraries.|<nobr>1.5.2-foss-2015g</br>1.5.2</nobr>|
|**[APR-util](http://apr.apache.org/)**|Apache Portable Runtime (APR) util libraries.|<nobr>1.5.4</br>1.5.4-foss-2015g</nobr>|
|**[Armadillo](http://arma.sourceforge.net/)**|Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions.|<nobr>7.500.0-foss-2016a-Python-3.5.2</nobr>|
|**[arpack-ng](http://forge.scilab.org/index.php/p/arpack-ng/)**|ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.|<nobr>3.3.0-foss-2016a</nobr>|
|**[ATLAS](http://math-atlas.sourceforge.net)**|ATLAS (Automatically Tuned Linear Algebra Software) is the application of the AEOS (Automated Empirical Optimization of Software) paradigm, with the present emphasis on the Basic Linear Algebra Subprograms (BLAS), a widely used, performance-critical, linear algebra kernel library.|<nobr>3.10.1-GCC-4.9.3-2.25-LAPACK-3.4.2</nobr>|
|**[Autoconf](http://www.gnu.org/software/autoconf/)**|Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.|<nobr>2.69</br>2.69-GNU-4.9.3-2.25</br>2.69-intel-2015b</br>2.69-intel-2017.00</br>2.69-foss-2016a</br>2.69-GNU-5.1.0-2.25</nobr>|
|**[Automake](http://www.gnu.org/software/automake/automake.html)**|Automake: GNU Standards-compliant Makefile generator|<nobr>1.15-GNU-5.1.0-2.25</br>1.15-foss-2016a</br>1.15-GNU-4.9.3-2.25</br>1.15-intel-2015b</br>1.15</br>1.15-intel-2017.00</nobr>|
|**[Autotools](http://autotools.io)**|This bundle collect the standard GNU build tools: Autoconf, Automake and libtool|<nobr>20150215-GNU-4.9.3-2.25</br>20150215-intel-2017.00</br>20150215-GNU-5.1.0-2.25</br>20150215-intel-2015b</br>20150215-foss-2016a</br>20150215</nobr>|
|**[Bash](http://www.gnu.org/software/bash)**|Bash is an sh-compatible command language interpreter that executes commands read from the standard input or from a file. Bash also incorporates useful features from the Korn and C shells (ksh and csh).|<nobr>4.3</nobr>|
|**[binutils](http://directory.fsf.org/project/binutils/)**|binutils: GNU binary utilities|<nobr>2.25</br>2.26-GCCcore-5.4.0</br>2.26</br>2.25-GCC-5.1.0-binutils-2.25</br>2.25-GCCcore-4.9.3</br>2.26-GCCcore-5.3.0</br>2.25-GCC-4.9.3</br>2.25-GCC-4.9.3-binutils-2.25</nobr>|
|**[Bison](http://www.gnu.org/software/bison)**|Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.|<nobr>3.0.4-foss-2016a</br>3.0.4-GCC-4.9.3</br>3.0.4</br>2.7-foss-2015g</br>3.0.2</br>3.0.4-GCCcore-5.4.0</br>2.7</br>3.0.4-intel-2015b</br>2.5-intel-2015b</br>3.0.4-GCC-4.9.3-binutils-2.25</br>3.0.4-GCC-5.1.0-binutils-2.25</br>3.0.4-GCCcore-4.9.3</br>3.0.4-GCCcore-5.3.0</nobr>|
|**[Boost](http://www.boost.org/)**|Boost provides free peer-reviewed portable C++ source libraries.|<nobr>1.58.0-foss-2015g-Python-2.7.9</br>1.60.0-intel-2016a</br>1.59.0-intel-2015b</br>1.60.0-foss-2015g-Python-2.7.9</br>1.61.0-foss-2016a-serial</br>1.60.0-foss-2015g-Python-2.7.9.lua</nobr>|
|**[byacc](http://invisible-island.net/byacc/byacc.html)**|Berkeley Yacc (byacc) is generally conceded to be the best yacc variant available. In contrast to bison, it is written to avoid dependencies upon a particular compiler.|<nobr>20150711-intel-2015b</br>20120526</br>20120526-foss-2016a</br>20120526-foss-2015g</br>20120526-intel-2015b</nobr>|
|**[bzip2](http://www.bzip.org/)**|bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.|<nobr>1.0.6-intel-2017.00</br>1.0.6-intel-2016.01</br>1.0.6</br>1.0.6-foss-2016a</br>1.0.6-intel-2016a</br>1.0.6-intel-2015b</br>.1.0.6-foss-2015g.lua</br>1.0.6-foss-2015g</nobr>|
|**[cairo](http://cairographics.org)**|Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB|<nobr>1.12.18</nobr>|
|**[CMake](http://www.cmake.org)**|CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.|<nobr>3.5.2-intel-2016a</br>3.6.2.lua</br>3.4.1-foss-2016a</br>3.5.2-foss-2016a</br>3.3.1-GCC-4.9.3-2.25</br>3.4.1-intel-2015b</br>3.3.1-foss-2016a</br>3.3.1-foss-2015g</br>3.5.2</nobr>|
|**[CUDA](https://developer.nvidia.com/cuda-toolkit)**|CUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.|<nobr>7.5.18</nobr>|
|**[cURL](http://curl.haxx.se)**|libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more.|<nobr>7.51.0</br>7.37.1-foss-2015g</br>7.37.1</nobr>|
|**[Doxygen](http://www.doxygen.org)**|Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.|<nobr>1.8.11</nobr>|
|**[EasyBuild](http://hpcugent.github.com/easybuild/)**|EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.|<nobr>2.6.0</br>2.8.1</br>3.0.0</br>2.7.0</br>3.0.2.lua</br>2.8.0</nobr>|
|**[expat](http://expat.sourceforge.net/)**|Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags)|<nobr>2.1.0-foss-2015g</br>2.1.0</nobr>|
|**[ffmpeg](https://www.ffmpeg.org/)**|A complete, cross-platform solution to record, convert and stream audio and video.|<nobr>2.4</nobr>|
|**[FFTW](http://www.fftw.org)**|FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.|<nobr>3.3.4-intel-2015b</br>3.3.4-gompi-2016.04</br>3.3.4-gompi-2016a</br>3.3.5-intel-2017.00</br>3.3.4-gompi-2015g</nobr>|
|**[fixesproto](http://www.freedesktop.org/wiki/Software/xlibs)**|X.org FixesProto protocol headers.|<nobr>5.0</nobr>|
|**[flex](http://flex.sourceforge.net/)**|Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.|<nobr>2.5.39-foss-2015g</br>2.5.39-GCC-5.1.0-binutils-2.25</br>2.6.0</br>2.5.39-GCC-4.9.3-binutils-2.25</br>2.5.39-GCC-4.9.3</br>2.6.0-GCCcore-5.3.0</br>2.5.35-intel-2015b</br>2.6.0-GCCcore-5.4.0</br>2.5.39</br>2.5.39-foss-2016a</br>2.5.39-GCCcore-4.9.3</br>2.5.39-intel-2015b</nobr>|
|**[FLTK](http://www.fltk.org)**|FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation.|<nobr>1.3.2</nobr>|
|**[fontconfig](http://www.freedesktop.org/software/fontconfig)**|Fontconfig is a library designed to provide system-wide font configuration, customization and application access.|<nobr>2.11.1</nobr>|
|**[fontsproto](http://www.freedesktop.org/wiki/Software/xlibs)**|X11 font extension wire protocol|<nobr>2.1.3</nobr>|
|**[Forge](http://www.allinea.com/products/develop-allinea-forge)**|Allinea Forge is the complete toolsuite for software development - with everything needed to debug, profile, optimize, edit and build C, C++ and FORTRAN applications on Linux for high performance - from single threads through to complex parallel HPC codes with MPI, OpenMP, threads or CUDA.|<nobr>6.0.6</br>5.7</br>6.1.2.lua</br>6.0.5</br>5.1-43967</nobr>|
|**[foss]((none))**|GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.|<nobr>2016a</br>2016.04</br>2015g</nobr>|
|**[freetype](http://freetype.org)**|FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well.|<nobr>2.5.3</nobr>|
|**[GCC](http://gcc.gnu.org/)**|The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).|<nobr>4.9.3-binutils-2.25</br>5.1.0-binutils-2.25</br>5.3.0-2.26</br>4.9.3</br>4.9.3-2.25</br>5.3.0-binutils-2.25</nobr>|
|**[GCCcore](http://gcc.gnu.org/)**|The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).|<nobr>5.3.0</br>4.9.3</br>5.4.0</nobr>|
|**[GDAL](http://www.gdal.org/)**|GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.|<nobr>2.1.0-foss-2015g</br>1.9.2-foss-2015g</nobr>|
|**gettext**|&nbsp;|<nobr>.0.19.2.lua</br>0.19.6-intel-2017.00</br>0.19.6-foss-2016a</br>0.19.4.lua</br>0.19.2</br>0.19.2-foss-2015g</nobr>|
|**[gimkl]((none))**|GNU Compiler Collection (GCC) based compiler toolchain, next to Intel MPI and Intel MKL (BLAS, (Sca)LAPACK, FFTW).|<nobr>2.11.5</nobr>|
|**[gimpi]((none))**|GNU Compiler Collection (GCC) based compiler toolchain, next to Intel MPI.|<nobr>2.11.5</nobr>|
|**git**|&nbsp;|<nobr>2.11.0-GNU-4.9.3-2.25.lua</br>2.8.0-GNU-4.9.3-2.25</nobr>|
|**[GLib](http://www.gtk.org/)**|GLib is one of the base libraries of the GTK+ project|<nobr>2.40.0</nobr>|
|**[GMP](http://gmplib.org/)**|GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers.|<nobr>6.1.0-intel-2015b</br>5.0.5</br>6.1.0-foss-2016a</br>6.0.0a</br>6.0.0a-intel-2015b</br>6.1.0-intel-2017.00</br>5.0.5-foss-2015g</nobr>|
|**[GNU](http://www.gnu.org/software/)**|Compiler-only toolchain with GCC and binutils.|<nobr>4.9.3-2.25</br>5.1.0-2.25</nobr>|
|**[gompi]((none))**|GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.|<nobr>2016a</br>2016.04</br>2015g</nobr>|
|**[GROMACS](http://www.gromacs.org)**|GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.|<nobr>5.1.2-intel-2015b-hybrid-single-cuda</br>5.1.2-intel-2016a-hybrid</br>5.1.2-intel-2015b-hybrid-single-CUDA-7.5-PLUMED-2.2.1</br>5.1.2-intel-2015b-hybrid-single-CUDA-7.5-PLUMED-2.2.1-test</nobr>|
|**[GSL](http://www.gnu.org/software/gsl/)**|The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.|<nobr>2.1-intel-2015b</br>1.16-intel-2015b</br>1.16-intel-2016.01</nobr>|
|**[guile](http://www.gnu.org/software/guile)**|Guile is the GNU Ubiquitous Intelligent Language for Extensions, the official extension language for the GNU operating system.|<nobr>1.8.8</br>1.8.8-intel-2015b</br>1.8.8-foss-2016a</nobr>|
|**[gzip](http://www.gnu.org/software/gzip/)**|gzip (GNU zip) is a popular data compression program as a replacement for compress|<nobr>1.6-foss-2015g</br>1.6</br>1.6-foss-2016a</br>1.6-intel-2015b</nobr>|
|**[HDF5](http://www.hdfgroup.org/HDF5/)**|HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.|<nobr>1.8.16-foss-2016a</br>1.8.16-intel-2016.01</br>1.8.16-intel-2015b</nobr>|
|**[hwloc](http://www.open-mpi.org/projects/hwloc/)**|The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently.|<nobr>1.11.0</br>1.11.3-GCC-5.3.0-2.26</br>1.11.1-iccifort-2015.3.187-GNU-4.9.3-2.25</br>1.11.0-GNU-4.9.3-2.25</br>1.11.2-GCC-4.9.3-2.25</br>1.11.0-GNU-5.1.0-2.25</nobr>|
|**[icc](http://software.intel.com/en-us/intel-compilers/)**|C and C++ compiler from Intel|<nobr>2015.3.187-GNU-5.1.0-2.25</br>2017.0.098-GCC-5.4.0-2.26</br>2016.1.150-GCC-4.9.3-2.25</br>2015.3.187-GNU-4.9.3-2.25</nobr>|
|**[iccifort](http://software.intel.com/en-us/intel-cluster-toolkit-compiler/)**|Intel C, C++ and Fortran compilers|<nobr>2015.3.187-GNU-5.1.0-2.25</br>2017.0.098-GCC-5.4.0-2.26</br>2016.1.150-GCC-4.9.3-2.25</br>2015.3.187-GNU-4.9.3-2.25</nobr>|
|**[ifort](http://software.intel.com/en-us/intel-compilers/)**|Fortran compiler from Intel|<nobr>2015.3.187-GNU-5.1.0-2.25</br>2017.0.098-GCC-5.4.0-2.26</br>2016.1.150-GCC-4.9.3-2.25</br>2015.3.187-GNU-4.9.3-2.25</nobr>|
|**[iimpi](http://software.intel.com/en-us/intel-cluster-toolkit-compiler/)**|Intel C/C++ and Fortran compilers, alongside Intel MPI.|<nobr>8.1.5-GCC-4.9.3-2.25</br>7.3.5-GNU-5.1.0-2.25</br>2017.00-GCC-5.4.0-2.26</br>2016.01-GCC-4.9.3-2.25</nobr>|
|**[imkl](http://software.intel.com/en-us/intel-mkl/)**|Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines for science, engineering, and financial applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.|<nobr>11.2.3.187-gimpi-2.11.5</br>11.3.1.150-iimpi-2016.01-GCC-4.9.3-2.25</br>2017.0.098-iimpi-2017.00-GCC-5.4.0-2.26</br>11.2.3.187-iimpi-7.3.5-GNU-5.1.0-2.25</br>11.3.1.150-iimpi-8.1.5-GCC-4.9.3-2.25</nobr>|
|**[impi](http://software.intel.com/en-us/intel-mpi-library/)**|The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.|<nobr>2017.0.098-iccifort-2017.0.098-GCC-5.4.0-2.26</br>5.1.2.150-iccifort-2016.1.150-GCC-4.9.3-2.25</br>5.0.3.048-iccifort-2015.3.187-GNU-5.1.0-2.25</br>5.0.3.048-GCC-4.9.3</nobr>|
|**[inputproto](http://www.freedesktop.org/wiki/Software/xlibs)**|X.org InputProto protocol headers.|<nobr>2.3</nobr>|
|**[intel](http://software.intel.com/en-us/intel-cluster-toolkit-compiler/)**|Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL.|<nobr>2017.00</br>2015b</br>2016.01</br>2016a</nobr>|
|**[ISL](http://isl.gforge.inria.fr/)**|isl is a library for manipulating sets and relations of integer points bounded by linear constraints.|<nobr>0.15</nobr>|
|**[Java](http://java.com/)**|Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.|<nobr>1.8.0_51</br>1.7.0_79.lua</br>1.7.0_79</nobr>|
|**[JOE](http://joe-editor.sourceforge.net)**|JOE is a full featured terminal-based screen editor which is distributed under the GNU General Public License (GPL)|<nobr>4.2</nobr>|
|**[kbproto](http://www.freedesktop.org/wiki/Software/xlibs)**|X.org KBProto protocol headers.|<nobr>1.0.6</nobr>|
|**[libdrm](http://dri.freedesktop.org)**|Direct Rendering Manager runtime library.|<nobr>2.4.27</nobr>|
|**[libffi](http://sourceware.org/libffi/)**|The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time.|<nobr>3.2.1-foss-2016a</br>3.0.13</br>3.1-intel-2015b</br>3.0.13-intel-2015b</br>3.1-intel-2016.01</nobr>|
|**[libfontenc](http://www.freedesktop.org/wiki/Software/xlibs/)**|X11 font encoding library|<nobr>1.1.3</nobr>|
|**[libgdiplus](https://github.com/mono/libgdiplus)**|An Open Source implementation of the GDI+ API.|<nobr>3.12</nobr>|
|**[libICE](http://www.freedesktop.org/wiki/Software/xlibs)**|X Inter-Client Exchange library for freedesktop.org|<nobr>1.0.9</nobr>|
|**[libjpeg-turbo](http://sourceforge.net/projects/libjpeg-turbo/)**|libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding.|<nobr>1.4.0</nobr>|
|**[libmatheval](http://www.gnu.org/software/libmatheval/)**|GNU libmatheval is a library (callable from C and Fortran) to parse and evaluate symbolic expressions input as text.|<nobr>1.1.8</br>1.1.8-foss-2016a</br>1.1.8-intel-2015b</br>1.1.11-intel-2015b</nobr>|
|**[libpciaccess](http://cgit.freedesktop.org/xorg/lib/libpciaccess/)**|Generic PCI access library.|<nobr>0.13.1</nobr>|
|**[libpng](http://www.libpng.org/pub/png/libpng.html)**|libpng is the official PNG reference library|<nobr>1.6.12</nobr>|
|**[libpthread-stubs](http://xcb.freedesktop.org/)**|The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.|<nobr>0.3</nobr>|
|**[libreadline](http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html)**|The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.|<nobr>.6.3</br>6.3-intel-2016.01</br>6.3-foss-2015g</br>6.3-foss-2016a</br>6.3-intel-2017.00</br>6.3-gimkl-2.11.5</br>6.3-intel-2015b</br>6.3</nobr>|
|**[libSM](http://www.freedesktop.org/wiki/Software/xlibs)**|X11 Session Management library, which allows for applications to both manage sessions, and make use of session managers to save and restore their state for later use.|<nobr>1.2.2</nobr>|
|**[LibTIFF](http://www.remotesensing.org/libtiff/)**|tiff: Library and tools for reading and writing TIFF data files|<nobr>4.0.3</nobr>|
|**[libtool](http://www.gnu.org/software/libtool)**|GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.|<nobr>2.4.2</br>2.4.6-foss-2016a</br>2.4.2-foss-2015g</br>2.4.6-intel-2017.00</br>2.4.6-intel-2015b</br>2.4.6-GNU-5.1.0-2.25</br>2.4.6</br>2.4.6-GNU-4.9.3-2.25</nobr>|
|**[libunistring](http://www.gnu.org/software/libunistring/)**|This library provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard.|<nobr>0.9.3</br>0.9.3-foss-2016a</br>0.9.3-intel-2015b</nobr>|
|**[libX11](http://www.freedesktop.org/wiki/Software/xlibs)**|X11 client-side library|<nobr>1.6.2-Python-2.7.9</nobr>|
|**[libXau](http://www.freedesktop.org/wiki/Software/xlibs)**|The libXau package contains a library implementing the X11 Authorization Protocol. This is useful for restricting client access to the display.|<nobr>1.0.8</nobr>|
|**[libxcb](http://xcb.freedesktop.org/)**|The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.|<nobr>1.11-Python-2.7.9</nobr>|
|**[libXdmcp](http://www.freedesktop.org/wiki/Software/xlibs)**|The libXdmcp package contains a library implementing the X Display Manager Control Protocol. This is useful for allowing clients to interact with the X Display Manager.|<nobr>1.1.2</nobr>|
|**[libXext](http://www.freedesktop.org/wiki/Software/xlibs)**|Common X Extensions library|<nobr>1.3.3</nobr>|
|**[libXfixes](http://www.freedesktop.org/wiki/Software/xlibs)**|X Fixes extension library|<nobr>5.0.1</nobr>|
|**[libXfont](http://www.freedesktop.org/wiki/Software/xlibs)**|X font libary|<nobr>1.5.1-Python-2.7.9</nobr>|
|**[libxml2](http://xmlsoft.org/)**|Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).|<nobr>2.9.3-intel-2016a</br>2.9.3-foss-2016a</br>2.9.2-intel-2015b</nobr>|
|**[libXt](http://www.freedesktop.org/wiki/Software/xlibs)**|libXt provides the X Toolkit Intrinsics, an abstract widget library upon which other toolkits are based. Xt is the basis for many toolkits, including the Athena widgets (Xaw), and LessTif (a Motif implementation).|<nobr>1.1.4-libX11-1.6.2</nobr>|
|**Lmod**|&nbsp;|<nobr>7.2.2.lua</br>7.0.6</br>6.4.2</nobr>|
|**[Lua](http://www.lua.org/)**|Lua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping.|<nobr>.5.1.4-8</br>5.1.4-8.lua</nobr>|
|**[M4](http://www.gnu.org/software/m4/m4.html)**|GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.|<nobr>1.4.17</br>1.4.17-GCCcore-5.3.0</br>1.4.17-GCC-4.9.3</br>1.4.17-GCC-4.9.3-binutils-2.25</br>1.4.17-GCCcore-5.4.0</br>1.4.17-foss-2016a</br>1.4.16-intel-2015b</br>1.4.17-GNU-4.9.3-2.25</br>1.4.17-GCCcore-4.9.3</br>1.4.17-GNU-5.1.0-2.25</br>1.4.17-intel-2015b</br>1.4.17-intel-2017.00</br>1.4.17-GCC-5.1.0-binutils-2.25</nobr>|
|**[make](http://www.gnu.org/software/make/make.html)**|make-3.82: GNU version of make utility|<nobr>3.82</nobr>|
|**[makedepend](http://www.linuxfromscratch.org/blfs/view/svn/x/makedepend.html)**|The makedepend package contains a C-preprocessor like utility to determine build-time dependencies.|<nobr>1.0.4</nobr>|
|**MATLAB**|&nbsp;|<nobr>2015b-EDU</br>2015a-EDU</br>2015b-COM</br>2015a-COM</nobr>|
|**Maven**|&nbsp;|<nobr>3.3.9.lua</br>3.3.9</nobr>|
|**[Mercurial](http://mercurial.selenic.com/)**|Mercurial is a free, distributed source control management tool. It efficiently handles projects of any size and offers an easy and intuitive interface.|<nobr>3.7.3-foss-2015g-Python-2.7.9</nobr>|
|**[MLD2P4](http://www.mld2p4.it)**|MLD2P4 (Multi-Level Domain Decomposition Parallel Preconditioners Package based on PSBLAS) is a package of parallel algebraic multi-level preconditioners. It implements various versions of one-level additive and of multi-level additive and hybrid Schwarz algorithms. In the multi-level case, a purely algebraic approach is applied to generate coarse-level corrections, so that no geometric background is needed concerning the matrix to be preconditioned. The matrix is assumed to be square, real or complex, with a symmetric sparsity pattern.|<nobr>2.0-rc4-GCC-4.9.3-2.25</nobr>|
|**[MPICH](http://www.mpich.org/)**|MPICH v3.x is an open source high-performance MPI 3.0 implementation. It does not support InfiniBand (use MVAPICH2 with InfiniBand devices).|<nobr>3.2-GCC-4.9.3-2.25</nobr>|
|**[NASM](http://www.nasm.us/)**|NASM: General-purpose x86 assembler|<nobr>2.11.05</nobr>|
|**[ncurses](http://www.gnu.org/software/ncurses/)**|The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.|<nobr>5.9-intel-2016.01</br>5.9-intel-2015b</br>.6.0</br>5.9-gimkl-2.11.5</br>6.0-foss-2016a</br>5.9-foss-2015g</br>5.9</br>.6.0-intel-2016a.lua</br>5.9-GCC-4.9.3-2.25</br>6.0-intel-2016a</br>6.0-intel-2017.00</br>6.0</br>5.9-GNU-4.9.3-2.25</nobr>|
|**[numactl](http://oss.sgi.com/projects/libnuma/)**|The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.|<nobr>2.0.10-GNU-5.1.0-2.25</br>2.0.11-GCC-5.3.0-2.26</br>2.0.11-GCC-4.9.3-2.25</br>2.0.10-iccifort-2015.3.187-GNU-4.9.3-2.25</br>2.0.11</br>2.0.10-GNU-4.9.3-2.25</br>2.0.10</nobr>|
|**[numpy](http://www.numpy.org)**|NumPy is the fundamental package for scientific computing with Python. It contains among other things: a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran code, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses, NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.|<nobr>1.8.2-intel-2015b-Python-2.7.9</br>1.8.2-intel-2015b-Python-2.7.11</br>1.8.2-intel-2016.01-Python-2.7.9</nobr>|
|**[Octave](http://www.gnu.org/software/octave/)**|GNU Octave is a high-level interpreted language, primarily intended for numerical computations.|<nobr>3.8.2-gimkl-2.11.5</br>4.0.0-foss-2015g</br>4.0.1-gimkl-2.11.5</nobr>|
|**[OPARI2](http://www.score-p.org)**|OPARI2, the successor of Forschungszentrum Juelich's OPARI, is a source-to-source instrumentation tool for OpenMP and hybrid codes. It surrounds OpenMP directives and runtime library calls with calls to the POMP2 measurement interface.|<nobr>2.0</nobr>|
|**[OpenBLAS](http://xianyi.github.com/OpenBLAS/)**|OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.|<nobr>0.2.14-GNU-4.9.3-2.25-LAPACK-3.5.0</br>0.2.15-GCC-5.1.0-binutils-2.25-LAPACK-3.6.0</br>0.2.15-GCC-5.1.0-binutils-2.25-LAPACK-3.6.0-gompi-2016a</br>0.2.18-GCC-5.3.0-2.26-LAPACK-3.6.0</br>0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0</br>0.2.14-GNU-5.1.0-2.25-LAPACK-3.5.0</nobr>|
|**[OpenMPI](http://www.open-mpi.org/)**|The Open MPI Project is an open source MPI-2 implementation.|<nobr>1.10.2-GCC-5.3.0-2.26</br>1.8.8-iccifort-2015.3.187-GNU-4.9.3-2.25</br>1.8.8-GNU-4.9.3-2.25</br>1.10.2-GCC-4.9.3-2.25</nobr>|
|**[ORCA](http://cec.mpg.de/forum/)**|ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules. It features a wide variety of standard quantum chemical methods ranging from semiempirical methods to DFT to single- and multireference correlated ab initio methods. It can also treat environmental and relativistic effects.|<nobr>3_0_3-linux_x86-64</nobr>|
|**[OTF2](http://www.score-p.org)**|The Open Trace Format 2 is a highly scalable, memory efficient event trace data format plus support library. It is the new standard trace format for Scalasca, Vampir, and TAU and is open for other tools.|<nobr>2.0</nobr>|
|**[PAPI](http://icl.cs.utk.edu/projects/papi/)**|PAPI provides the tool designer and application engineer with a consistent interface and methodology for use of the performance counter hardware found in most major microprocessors. PAPI enables software engineers to see, in near real time, the relation between software performance and processor events. In addition Component PAPI provides access to a collection of components that expose performance measurement opportunites across the hardware and software stack.|<nobr>5.4.3</nobr>|
|**[PCRE](http://www.pcre.org/)**|The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.|<nobr>8.37</br>8.37-intel-2016.01</br>8.37-gimkl-2.11.5</br>8.37-foss-2015g</nobr>|
|**[PerformanceReports](http://www.allinea.com/products/allinea-performance-reports)**|Allinea Performance Reports are the most effective way to characterize and understand the performance of HPC application runs. One single-page HTML report elegantly answers a range of vital questions for any HPC site. - Is this application well-optimized for the system and the processors it is running on? - Does it benefit from running at this scale? - Are there I/O, networking or threading bottlenecks affecting performance? - Which hardware, software or configuration changes can we make to improve performance further. - How much energy did this application use?|<nobr>6.0.6</nobr>|
|**Perl**|&nbsp;|<nobr>5.24.0-GCC-4.9.3-2.25-bare.lua</br>5.20.2-GNU-4.9.3-2.25-bare</nobr>|
|**[pixman](http://www.pixman.org/)**|Pixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server.|<nobr>0.32.6</nobr>|
|**[pkg-config](http://www.freedesktop.org/wiki/Software/pkg-config/)**|pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0` for instance, rather than hard-coding values on where to find glib (or other libraries).|<nobr>0.27.1</br>0.27.1-intel-2015b</br>0.29-foss-2016a</nobr>|
|**[PLUMED](http://www.plumed-code.org)**|PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes.|<nobr>2.2.1-intel-2015b</br>2.3b-foss-2016a</nobr>|
|**[PSBLAS](http://people.uniroma2.it/salvatore.filippone/psblas/)**|Most computationally intensive applications work on irregular and sparse domains that complicate their implementation on parallel machines. The major goal of the Parallel Sparse Basic Linear Algebra Subroutines (PSBLAS) project is to provide a framework to enable easy, efficient and portable implementations of iterative solvers for linear systems, while shielding the user from most details of their parallelization. The interface is designed keeping in view a Single Program Multiple Data programming model on distributed memory machines.|<nobr>3.3.4-3-GCC-4.9.3-2.25</nobr>|
|**[PSBLAS-ext](http://people.uniroma2.it/salvatore.filippone/psblas/)**|PSBLAS - Extended formats and NVIDIA GPU support|<nobr>1.0-4-GCC-4.9.3-2.25</nobr>|
|**[Python](http://python.org/)**|Python is a programming language that lets you work more quickly and integrate your systems more effectively.|<nobr>3.5.2-foss-2016a</br>2.7.9-intel-2015b</br>2.7.9-foss-2015g</br>2.7.9-intel-2016.01</br>3.5.2-intel-2017.00</br>2.7.11-intel-2015b</br>2.7.9</nobr>|
|**[Qt](http://qt-project.org/)**|Qt is a comprehensive cross-platform C++ application framework.|<nobr>4.8.6</nobr>|
|**[QuantumESPRESSO](http://www.pwscf.org/)**|Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft).|<nobr>5.4.0-intel-2017.00</nobr>|
|**[renderproto](http://www.freedesktop.org/wiki/Software/xlibs)**|Xrender protocol and ancillary headers|<nobr>0.11</nobr>|
|**[Ruby](https://www.ruby-lang.org)**|Ruby is a dynamic, open source programming language with a focus on simplicity and productivity. It has an elegant syntax that is natural to read and easy to write.|<nobr>2.3.1</nobr>|
|**[ScaLAPACK](http://www.netlib.org/scalapack/)**|The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.|<nobr>2.0.2-gompi-2015g-OpenBLAS-0.2.14-LAPACK-3.5.0</br>2.0.2-gompi-2016.04-OpenBLAS-0.2.18-LAPACK-3.6.0</br>2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0</nobr>|
|**[ScientificPython](https://sourcesup.cru.fr/projects/scientific-py/)**|ScientificPython is a collection of Python modules for scientific computing. It contains support for geometry, mathematical functions, statistics, physical units, IO, visualization, and parallelization.|<nobr>2.9.4-intel-2016.01-Python-2.7.9</br>2.9.4-intel-2015b-Python-2.7.9</br>2.9.4-intel-2015b-Python-2.7.11</nobr>|
|**[SCons](http://www.scons.org/)**|SCons is a software construction tool.|<nobr>2.3.6-foss-2015g-Python-2.7.9</nobr>|
|**[Serf](http://serf.apache.org/)**|The serf library is a high performance C-based HTTP client library built upon the Apache Portable Runtime (APR) library|<nobr>1.3.8-foss-2015g</nobr>|
|**[SIONlib](http://www.fz-juelich.de/ias/jsc/EN/Expertise/Support/Software/SIONlib/_node.html)**|SIONlib is a scalable I/O library for parallel access to task-local files. The library not only supports writing and reading binary data to or from several thousands of processors into a single or a small number of physical files, but also provides global open and close functions to access SIONlib files in parallel. This package provides a stripped-down installation of SIONlib for use with performance tools (e.g., Score-P), with renamed symbols to avoid conflicts when an application using SIONlib itself is linked against a tool requiring a different SIONlib version.|<nobr>1.6.1-tools</nobr>|
|**[spGPU](https://github.com/davidebarbieri/spgpu)**|spGPU is a set of custom matrix storages and CUDA kernels for sparse linear algebra computing on GPU. It isn't a replacement for cuBLAS/cuSPARSE that should be used for a full featured linear algebra environment on GPU.|<nobr>master-GCC-4.9.3-2.25</nobr>|
|**[SQLite](http://www.sqlite.org/)**|SQLite: SQL Database Engine in a C Library|<nobr>3.8.8.1-intel-2015b</br>3.8.8.1-foss-2015g</br>3.8.8.1-foss-2016a</br>3.9.2-intel-2017.00</br>3.8.8.1</br>3.9.2-intel-2015b</br>3.8.8.1-intel-2016.01</br>3.9.2-foss-2016a</nobr>|
|**[Subversion](http://subversion.apache.org/)**|Subversion is an open source version control system.|<nobr>1.8.16-foss-2015g</nobr>|
|**[Szip](http://www.hdfgroup.org/doc_resource/SZIP/)**|Szip compression software, providing lossless compression of scientific data|<nobr>2.1-intel-2015b</br>2.1-intel-2016.01</br>2.1-foss-2016a</br>2.1</nobr>|
|**tbb**|&nbsp;|<nobr>4.4.2.152.lua</br>4.4.2.152</nobr>|
|**[Tcl](http://www.tcl.tk/)**|Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.|<nobr>8.6.4</br>8.6.4-intel-2017.00</br>8.6.3-intel-2016.01</br>8.6.3-foss-2016a</br>8.6.3-intel-2015b</br>8.6.4-foss-2016a</br>8.6.4-intel-2015b</br>8.6.3</br>8.6.3-foss-2015g</br>8.5.12</nobr>|
|**[tcsh](http://www.tcsh.org)**|Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). It is a command language interpreter usable both as an interactive login shell and a shell script command processor. It includes a command-line editor, programmable word completion, spelling correction, a history mechanism, job control and a C-like syntax.|<nobr>6.19.00</nobr>|
|**[Tk](http://www.tcl.tk/)**|Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.|<nobr>8.6.4-foss-2016a-no-X11</br>8.6.4-intel-2017.00-no-X11</br>8.6.4-intel-2015b-no-X11</br>8.6.4-no-X11</br>8.5.12</nobr>|
|**[util-linux](http://www.kernel.org/pub/linux/utils/util-linux)**|Set of Linux utilities|<nobr>2.26.1</br>2.28-intel-2016a.lua</nobr>|
|**[Vampir](http://www.vampir.eu)**|The Vampir software tool provides an easy-to-use framework that enables developers to quickly display and analyze arbitrary program behavior at any level of detail. The tool suite implements optimized event analysis algorithms and customizable displays that enable fast and interactive rendering of very complex performance monitoring data.|<nobr>8.5.0</nobr>|
|**VASP**|&nbsp;|<nobr>5.4.1-intel-2015b-24Jun15</br>5.4.1-intel-2017.00-24Jun15</nobr>|
|**[VTune](http://software.intel.com/en-us/intel-vtune-amplifier-xe)**|Intel VTune Amplifier XE 2016 is the premier performance profiler for C, C++, C#, Fortran, Assembly and Java.|<nobr>2016_update1</nobr>|
|**[xbitmaps](http://www.freedesktop.org/wiki/Software/xlibs)**|provides bitmaps for x|<nobr>1.1.1</nobr>|
|**[xcb-proto](http://xcb.freedesktop.org/)**|The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.|<nobr>1.11-Python-2.7.9</nobr>|
|**[xdrfile](http://www.gromacs.org/Developer_Zone/Programming_Guide/XTC_Library)**|XTC library|<nobr>1.1.4-foss-2016a</br>1.1.4-foss-2015g</br>1.1.4-intel-2015b</nobr>|
|**[xextproto](http://www.freedesktop.org/wiki/Software/xlibs)**|XExtProto protocol headers.|<nobr>7.3.0</nobr>|
|**[xineramaproto](http://www.freedesktop.org/wiki/Software/xlibs)**|X protocol and ancillary headers for xinerama|<nobr>1.2.1</nobr>|
|**[xorg-macros](http://cgit.freedesktop.org/xorg/util/macros)**|X.org macros utilities.|<nobr>1.17</nobr>|
|**[xproto](http://www.freedesktop.org/wiki/Software/xlibs)**|X protocol and ancillary headers|<nobr>7.0.26</nobr>|
|**[xtrans](http://www.freedesktop.org/wiki/Software/xlibs)**|xtrans includes a number of routines to make X implementations transport-independent; at time of writing, it includes support for UNIX sockets, IPv4, IPv6, and DECnet.|<nobr>1.3.5</br>1.3.4</nobr>|
|**[XZ](http://tukaani.org/xz/)**|xz: XZ utilities|<nobr>5.2.2-foss-2016a</br>5.2.2-intel-2017.00</br>5.2.2.lua</nobr>|
|**zlib**|&nbsp;|<nobr>.1.2.8-foss-2015g.lua</br>1.2.8-intel-2015b</br>1.2.8-GCC-5.1.0-binutils-2.25</br>1.2.8-foss-2016a</br>1.2.8-intel-2017.00</br>1.2.8-GCC-4.9.3-binutils-2.25</br>1.2.8-GCCcore-4.9.3</br>1.2.8-foss-2015g</br>1.2.8</br>1.2.8-intel-2016a</br>1.2.8-intel-2016.01</br>1.2.8-GCC-4.9.3</br>1.2.8-GCCcore-5.3.0</br>1.2.8-GCCcore-5.4.0</nobr>|
## Bio
|Module|Description|Available versions|
|--|--|--|
|**bowtie2**|&nbsp;|<nobr>2.2.3</nobr>|
## Bullxde
|Module|Description|Available versions|
|--|--|--|
|**bullxde**|&nbsp;|<nobr>2.0</nobr>|
## Bullxmpi
|Module|Description|Available versions|
|--|--|--|
|**bullxmpi**|&nbsp;|<nobr>bullxmpi-1.2.4.3</nobr>|
## Chem
|Module|Description|Available versions|
|--|--|--|
|**abinit**|&nbsp;|<nobr>7.10.1-icc-impi</br>7.10.1-gcc-openmpi</br>7.6.2</nobr>|
|**cp2k-mpi**|&nbsp;|<nobr>2.5.1-gcc</nobr>|
|**lammps**|&nbsp;|<nobr>28Jun14</nobr>|
|**molpro**|&nbsp;|<nobr>2010.1-p45-intel</nobr>|
|**namd**|&nbsp;|<nobr>2.8</nobr>|
|**nwchem**|&nbsp;|<nobr>6.1.1</br>6.3-rev2-patch1-openmpi</br>6.3-rev2-patch1-venus</br>6.3-rev2-patch1</nobr>|
## Compilers
|Module|Description|Available versions|
|--|--|--|
|**bupc**|&nbsp;|<nobr>2.16.2</nobr>|
|**chicken**|&nbsp;|<nobr>4.8.0.6</nobr>|
|**gcc**|&nbsp;|<nobr>4.9.0</br>5.4.0</br>4.8.1</nobr>|
|**gupc**|&nbsp;|<nobr>4.8.0.3</nobr>|
|**intel**|&nbsp;|<nobr>13.5.192</br>15.3.187</br>14.0.1</br>15.2.164</nobr>|
|**java**|&nbsp;|<nobr>1.7</nobr>|
|**llvm**|&nbsp;|<nobr>3.6.0</nobr>|
## Engineering
|Module|Description|Available versions|
|--|--|--|
|**adams**|&nbsp;|<nobr>2013.2</nobr>|
|**ansys**|&nbsp;|<nobr>15.0.x</br>16.0.x</br>14.5.x</nobr>|
|**beopest**|&nbsp;|<nobr>12.0.1</br>13.3</br>12.2</nobr>|
|**blender**|&nbsp;|<nobr>2.71</nobr>|
|**Code_Saturne**|&nbsp;|<nobr>3.0.5</nobr>|
|**comsol**|&nbsp;|<nobr>43b-EDU</br>44-EDU</br>50-EDU</br>50-COM</br>44-COM</br>43b-COM</nobr>|
|**digimat**|&nbsp;|<nobr>5.0.1</nobr>|
|**Discovery_Studio**|&nbsp;|<nobr>4.0</nobr>|
|**dytran**|&nbsp;|<nobr>2013.0.1</nobr>|
|**fds**|&nbsp;|<nobr>5.5.3</br>6.svn</br>5.5.3-omp</nobr>|
|**hypermesh**|&nbsp;|<nobr>12.0.110</nobr>|
|**hyperworks**|&nbsp;|<nobr>13.0</nobr>|
|**lsdyna**|&nbsp;|<nobr>7.x.x</nobr>|
|**lsprepost**|&nbsp;|<nobr>4.2</nobr>|
|**lux**|&nbsp;|<nobr>1.3.1</nobr>|
|**marc**|&nbsp;|<nobr>2011</br>2013.1</nobr>|
|**matlab**|&nbsp;|<nobr>R2014a-COM</br>R2013a-COM</br>R2013a-EDU</br>R2014a-EDU</nobr>|
|**maxwell**|&nbsp;|<nobr>3.0</nobr>|
|**modflow-2005**|&nbsp;|<nobr>1.11.00</nobr>|
|**modflow-nwt**|&nbsp;|<nobr>1.0.9-aquaveo</br>1.0.9</nobr>|
|**nastran**|&nbsp;|<nobr>2013.1.1</nobr>|
|**openfoam**|&nbsp;|<nobr>2.2.1-icc-openmpi1.6.5-DP</br>2.2.1-gcc481-openmpi1.6.5-SP</br>2.2.1-gcc481-openmpi1.6.5-DP</br>2.2.2-icc-openmpi1.8.1-DP</br>2.2.1-icc-impi4.1.1.036-DP</nobr>|
|**paraview**|&nbsp;|<nobr>4.0.1-gcc481-bullxmpi1.2.4.1-osmesa10.0</nobr>|
|**pest**|&nbsp;|<nobr>13.0</nobr>|
|**wien2k**|&nbsp;|<nobr>13.1</br>14.2</nobr>|
## Environments
|Module|Description|Available versions|
|--|--|--|
|**bullxde**|&nbsp;|<nobr>2.0</nobr>|
|**PrgEnv-gnu**|&nbsp;|<nobr>4.4.6</br>4.4.6-test</br>4.8.1</nobr>|
|**PrgEnv-intel**|&nbsp;|<nobr>15.0.3</br>13.5.192</br>14.0.1</nobr>|
## Libraries
|Module|Description|Available versions|
|--|--|--|
|**adios**|&nbsp;|<nobr>1.8.0</nobr>|
|**boost**|&nbsp;|<nobr>1.56-icc-impi</br>1.56-gcc-openmpi</nobr>|
|**dataspaces**|&nbsp;|<nobr>1.4.0</nobr>|
|**fftw2**|&nbsp;|<nobr>2.1.5-icc</br>2.1.5-gcc</nobr>|
|**fftw2-mpi**|&nbsp;|<nobr>2.1.5-icc</br>2.1.5-gcc</nobr>|
|**fftw3**|&nbsp;|<nobr>3.3.3-gcc</br>3.3.3-icc</nobr>|
|**fftw3-mpi**|&nbsp;|<nobr>3.3.3-gcc</br>3.3.3-icc</nobr>|
|**gpi2**|&nbsp;|<nobr>1.0.2</br>1.1.1</br>1.1.0</nobr>|
|**gsl**|&nbsp;|<nobr>1.16-icc</br>1.16-gcc</nobr>|
|**hdf5**|&nbsp;|<nobr>1.8.13</br>1.8.11</nobr>|
|**hdf5-parallel**|&nbsp;|<nobr>1.8.11-gcc</br>1.8.13-gcc</br>1.8.13</br>1.8.13-gcc49</br>1.8.11</nobr>|
|**ipp**|&nbsp;|<nobr>13.5.192</br>15.3.187</br>14.0.1</br>15.2.164</nobr>|
|**libmesh**|&nbsp;|<nobr>0.9.3-petsc-3.4.4-icc-impi-mkl-dbg</br>0.9.3-petsc-3.4.4-icc-impi-mkl-dbg-2d</br>0.9.3-petsc-3.4.4-icc-impi-mkl-opt</nobr>|
|**magma**|&nbsp;|<nobr>.common-mic</br>1.3.0-mic</br>1.1.0-mic</nobr>|
|**mkl**|&nbsp;|<nobr>13.5.192</br>15.3.187</br>14.0.1</br>15.2.164</nobr>|
|**mxml**|&nbsp;|<nobr>2.9</nobr>|
|**netcdf**|&nbsp;|<nobr>4.2.1.1</br>4.3.0</nobr>|
|**netcdf-cxx**|&nbsp;|<nobr>4.2</nobr>|
|**netcdf-fortran**|&nbsp;|<nobr>4.2</nobr>|
|**netcdf-parallel**|&nbsp;|<nobr>4.3.0</nobr>|
|**opencl-rt**|&nbsp;|<nobr>4.5.0.8</nobr>|
|**opencl-sdk**|&nbsp;|<nobr>4.6.0.92</nobr>|
|**petsc**|&nbsp;|<nobr>3.5.3-icc15-impi-mkl-threads-dbg</br>3.5.3-icc15-impi-mkl-threads-opt</br>3.7.3-icc16-impi5-mkl-dbg</br>3.5.3-icc15-impi-mkl-opt</br>3.7.3-icc16-impi5-mkl-opt</br>3.5.3-icc15-impi-mkl-dbg</br>.common_help</br>.common_petsc_pre</br>.common_petsc_post</br>.common_functions</nobr>|
|**plasma**|&nbsp;|<nobr>2.6.0</nobr>|
|**slepc**|&nbsp;|<nobr>3.7.2-icc16-impi5-mkl-opt</br>3.7.2-icc16-impi5-mkl-dbg</br>3.4.4-icc15-impi-mkl-opt</br>3.4.4-icc15-impi-mkl-dbg</nobr>|
|**szip**|&nbsp;|<nobr>2.1</nobr>|
|**tbb**|&nbsp;|<nobr>13.5.192</br>15.3.187</br>14.0.1</br>15.2.164</nobr>|
|**trilinos**|&nbsp;|<nobr>11.2.3-gcc-openmpi-mkl-dbg</br>11.2.3-icc</br>11.2.3-gcc-openmpi-mkl-opt</nobr>|
|**zlib**|&nbsp;|<nobr>1.2.5</br>1.2.8</nobr>|
## Mpi
|Module|Description|Available versions|
|--|--|--|
|**bullxmpi**|&nbsp;|<nobr>bullxmpi_1.2.4.1</nobr>|
|**impi**|&nbsp;|<nobr>5.0.3.048</br>4.1.1.036</nobr>|
|**lam**|&nbsp;|<nobr>7.1.4-icc</nobr>|
|**mvapich2**|&nbsp;|<nobr>1.9-gcc46</br>1.9-icc</br>1.9-gcc</nobr>|
|**openmpi**|&nbsp;|<nobr>1.8.1-gcc46</br>1.8.1-gcc49</br>1.6.5-gcc</br>1.8.1-gcc</br>1.6.5-icc</br>1.6.5-gcc46</br>1.8.1-icc</nobr>|
## Nvidia
|Module|Description|Available versions|
|--|--|--|
|**cuda**|&nbsp;|<nobr>7.5</br>6.5.14</br>6.0.37</nobr>|
## Omics
|Module|Description|Available versions|
|--|--|--|
|**fastqc**|&nbsp;|<nobr>0.11.2</nobr>|
|**gatk**|&nbsp;|<nobr>2.6-4</br>.2.6-4.swp</nobr>|
|**hpg-aligner**|&nbsp;|<nobr>1.0.0</nobr>|
|**hpg-fastq**|&nbsp;|<nobr>1.0.0</nobr>|
|**hpg-variant**|&nbsp;|<nobr>1.0.0</nobr>|
|**ngsPipeline**|&nbsp;|<nobr>.1.0.0.swp</br>1.0.0</nobr>|
|**picard**|&nbsp;|<nobr>1.117</nobr>|
|**samtools**|&nbsp;|<nobr>0.1.19</nobr>|
|**snpEff**|&nbsp;|<nobr>3.6</nobr>|
## Oscar-Modules
|Module|Description|Available versions|
|--|--|--|
|**oscar-modules**|&nbsp;|<nobr>1.0.3</nobr>|
## Prace
|Module|Description|Available versions|
|--|--|--|
|**GLOBUS**|&nbsp;|<nobr>globus</nobr>|
|**PRACE**|&nbsp;|<nobr>prace</nobr>|
## Tools
|Module|Description|Available versions|
|--|--|--|
|**advisor_xe**|&nbsp;|<nobr>2013.5</br>2015.1.10.380555</nobr>|
|**cmake**|&nbsp;|<nobr>2.8.11</br>2.8.11-mic</nobr>|
|**cube**|&nbsp;|<nobr>4.2.3-gcc</br>4.2.3-icc</nobr>|
|**dhi-mike**|&nbsp;|<nobr>2016-SP2</br>2014</br>2016</br>default</nobr>|
|**elmer**|&nbsp;|<nobr>7.0-r6695-dbg</br>7.0-r6695-opt</nobr>|
|**gnuplot**|&nbsp;|<nobr>4.6.5</nobr>|
|**grace**|&nbsp;|<nobr>5.1.23</nobr>|
|**inspector_xe**|&nbsp;|<nobr>2015.1.2.379161</br>2013.5</nobr>|
|**intelpcm**|&nbsp;|<nobr>2.6</nobr>|
|**ipm**|&nbsp;|<nobr>0.983-icc-impi</nobr>|
|**itac**|&nbsp;|<nobr>8.1.4.045</br>9.0.3.051</nobr>|
|**likwid**|&nbsp;|<nobr>3.1.2-gcc</br>3.1.1-mic</br>3.1.2-icc</br>3.1.1-icc</br>3.1.2-mic</nobr>|
|**memoryscape**|&nbsp;|<nobr>3.4</nobr>|
|**mercurial**|&nbsp;|<nobr>2.9.1</nobr>|
|**MIKE**|&nbsp;|<nobr>2016-SP2</br>2014</br>2016</br>default</nobr>|
|**mono**|&nbsp;|<nobr>3.12.1</br>3.2.3</nobr>|
|**mpi.net**|&nbsp;|<nobr>1.0.0-mono-3.12.1</br>1.0.0-impi</br>1.0.0</nobr>|
|**numactl**|&nbsp;|<nobr>2.0.9</nobr>|
|**octave**|&nbsp;|<nobr>.hg-20130730</br>.3.6.4</nobr>|
|**opari2**|&nbsp;|<nobr>1.1.2-gcc</br>1.1.2-icc</nobr>|
|**openssh-x509**|&nbsp;|<nobr>6.2p2</nobr>|
|**oscar-modules**|&nbsp;|<nobr>1.0.3</nobr>|
|**otf2**|&nbsp;|<nobr>1.4-icc</br>1.2.1-gcc</br>1.4-gcc</br>1.2.1-icc</nobr>|
|**papi**|&nbsp;|<nobr>5.4.0-mic</br>5.3.0</br>5.3.2-mic</br>5.4.0</br>5.3.2</nobr>|
|**parallel**|&nbsp;|<nobr>20141122</nobr>|
|**python**|&nbsp;|<nobr>2.7.6</br>2.7.5</br>3.3.2</br>3.3.5</br>3.4.2</nobr>|
|**R**|&nbsp;|<nobr>3.1.1</br>.old.3.0.1</br>3.0.1</nobr>|
|**racket**|&nbsp;|<nobr>6.0.1</nobr>|
|**relion**|&nbsp;|<nobr>1.3</br>1.2</nobr>|
|**Rstudio**|&nbsp;|<nobr>0.97</nobr>|
|**ruby**|&nbsp;|<nobr>2.0.0-p247</nobr>|
|**scalasca2**|&nbsp;|<nobr>2.0-icc-impi</br>2.0-gcc-openmpi</nobr>|
|**scite**|&nbsp;|<nobr>3.4.3</nobr>|
|**scorep**|&nbsp;|<nobr>1.2.3-gcc-openmpi</br>1.2.3-icc-impi</nobr>|
|**tcl**|&nbsp;|<nobr>8.5.15</nobr>|
|**tk**|&nbsp;|<nobr>8.5.15</nobr>|
|**totalview**|&nbsp;|<nobr>8.13</br>8.12</nobr>|
|**turbovnc**|&nbsp;|<nobr>1.2.2</nobr>|
|**valgrind**|&nbsp;|<nobr>3.9.0-impi</nobr>|
|**vampir**|&nbsp;|<nobr>8.2</nobr>|
|**virtualgl**|&nbsp;|<nobr>2.4</nobr>|
|**vtune_xe**|&nbsp;|<nobr>2013.15</br>2015.3.0.403110</nobr>|
## Virtualization
|Module|Description|Available versions|
|--|--|--|
|**qemu**|&nbsp;|<nobr>2.1.2-vde2</br>2.1.2</br>2.1.0</br>2.1.0-vde2</nobr>|
|**vde2**|&nbsp;|<nobr>2.3.2</nobr>|
|**wine**|&nbsp;|<nobr>1.7.29</nobr>|
| Name | Version |
| ---- | ------: |
| modulename | 3.0.3 |
# List of Available UV Modules
## Bio
|Module|Description|Available versions|
|--|--|--|
|**[FastQC](http://www.bioinformatics.babraham.ac.uk/projects/download.html)**|A quality control application for high throughput sequence data|<nobr>0.11.3</nobr>|
|**[GATK](http://www.broadinstitute.org/gatk/)**|The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyse next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size.|<nobr>2.6-5-Java-1.7.0_79</nobr>|
|**[SnpEff](http://snpeff.sourceforge.net/)**|Genetic variant annotation and effect prediction toolbox.|<nobr>4.1_G</nobr>|
## Cae
|Module|Description|Available versions|
|--|--|--|
|**ANSYS**|&nbsp;|<nobr>16.1</br>17.0</nobr>|
|**[OpenFOAM](http://www.openfoam.com/)**|OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics.|<nobr>2.2.2-intel-2015b</br>2.3.0-intel-2015b</nobr>|
## Chem
|Module|Description|Available versions|
|--|--|--|
|**[ABINIT](http://www.abinit.org/)**|Abinit is a plane wave pseudopotential code for doing condensed phase electronic structure calculations using DFT.|<nobr>7.10.1-foss-2015b</br>7.10.1-intel-2015b</nobr>|
|**[Libint](https://sourceforge.net/p/libint/)**|Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.|<nobr>1.1.4-intel-2015b</nobr>|
|**[libxc](http://www.tddft.org/programs/octopus/wiki/index.php/Libxc)**|Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.|<nobr>2.2.1-intel-2015b</nobr>|
## Compiler
|Module|Description|Available versions|
|--|--|--|
|**[GCC](http://gcc.gnu.org/)**|The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).|<nobr>4.9.3-binutils-2.25</br>5.1.0-binutils-2.25</br>4.4.7-system</br>4.9.3</br>6.2.0-2.27.lua</br>4.9.3-2.25.lua</nobr>|
|**GCCcore**|&nbsp;|<nobr>5.4.0.lua</br>6.2.0.lua</br>4.9.3.lua</nobr>|
|**[icc](http://software.intel.com/en-us/intel-compilers/)**|C and C++ compiler from Intel|<nobr>2015.3.187-GNU-5.1.0-2.25</br>2017.0.098-GCC-5.4.0-2.26.lua</nobr>|
|**[ifort](http://software.intel.com/en-us/intel-compilers/)**|Fortran compiler from Intel|<nobr>2015.3.187-GNU-5.1.0-2.25</br>2017.0.098-GCC-5.4.0-2.26.lua</nobr>|
|**LLVM**|&nbsp;|<nobr>3.9.0-intel-2017.00.lua</br>3.8.0-foss-2016a.lua</nobr>|
## Data
|Module|Description|Available versions|
|--|--|--|
|**[GDAL](http://www.gdal.org/)**|GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.|<nobr>2.0.1-foss-2015b</nobr>|
|**[HDF5](http://www.hdfgroup.org/HDF5/)**|HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.|<nobr>1.8.13-intel-2015b</br>1.8.16-intel-2015b</br>1.8.15-patch1-foss-2015b</br>1.8.16-foss-2016a.lua</nobr>|
|**[netCDF](http://www.unidata.ucar.edu/software/netcdf/)**|NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.|<nobr>4.3.2-intel-2015b</br>4.3.3.1-foss-2015b</nobr>|
## Devel
|Module|Description|Available versions|
|--|--|--|
|**[Autoconf](http://www.gnu.org/software/autoconf/)**|Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.|<nobr>2.69-GNU-4.9.3-2.25</br>2.69-GNU-5.1.0-2.25</br>2.69.lua</br>2.69-intel-2017.00.lua</br>2.69-foss-2016a.lua</nobr>|
|**[Automake](http://www.gnu.org/software/automake/automake.html)**|Automake: GNU Standards-compliant Makefile generator|<nobr>1.15-GNU-4.9.3-2.25</br>1.15-GNU-5.1.0-2.25</br>1.15.lua</br>1.15-intel-2017.00.lua</br>1.15-foss-2016a.lua</nobr>|
|**[Autotools](http://autotools.io)**|This bundle collect the standard GNU build tools: Autoconf, Automake and libtool|<nobr>20150215-GNU-4.9.3-2.25</br>20150215-GNU-5.1.0-2.25</br>20150215.lua</br>20150215-intel-2017.00.lua</br>20150215-foss-2016a.lua</nobr>|
|**[Boost](http://www.boost.org/)**|Boost provides free peer-reviewed portable C++ source libraries.|<nobr>1.58.0-intel-2015b-Python-2.7.9</br>1.60.0-foss-2015g-Python-2.7.9.lua</nobr>|
|**[CMake](http://www.cmake.org)**|CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.|<nobr>3.0.0-intel-2015b</br>3.4.1-foss-2015b</br>3.6.2.lua</br>3.5.2-foss-2016a.lua</br>3.6.2-intel-2017.00.lua</nobr>|
|**[Doxygen](http://www.doxygen.org)**|Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.|<nobr>1.8.7-intel-2015b</br>1.8.10-foss-2015b</nobr>|
|**[M4](http://www.gnu.org/software/m4/m4.html)**|GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.|<nobr>1.4.17-GCC-4.9.3-binutils-2.25</br>1.4.17-GNU-4.9.3-2.25</br>1.4.17</br>1.4.17-GNU-5.1.0-2.25</br>1.4.17-intel-2015b</br>1.4.17-foss-2015b</br>1.4.17-GCCcore-5.4.0.lua</br>1.4.17-GCCcore-6.2.0.lua</br>1.4.17-intel-2017.00.lua</br>1.4.17-GCCcore-4.9.3.lua</br>1.4.17-foss-2016a.lua</nobr>|
|**[make](http://www.gnu.org/software/make/make.html)**|make-3.82: GNU version of make utility|<nobr>3.82-intel-2015b</nobr>|
|**[Maven](http://maven.apache.org/index.html)**|Binary maven install, Apache Maven is a software project management and comprehension tool. Based on the concept of a project object model (POM), Maven can manage a project's build, reporting and documentation from a central piece of information.|<nobr>3.3.9</nobr>|
|**[ncurses](http://www.gnu.org/software/ncurses/)**|The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.|<nobr>5.9-intel-2015b</br>5.9-foss-2015g</br>5.9-foss-2015b</br>6.0.lua</br>6.0</br>6.0-intel-2017.00.lua</br>6.0-foss-2016a.lua</nobr>|
|**[SQLite](http://www.sqlite.org/)**|SQLite: SQL Database Engine in a C Library|<nobr>3.8.8.1-foss-2015g</br>3.8.8.1-intel-2015b</br>3.8.8.1-foss-2015b</br>3.9.2-intel-2017.00.lua</br>3.9.2-foss-2016a.lua</nobr>|
## Lang
|Module|Description|Available versions|
|--|--|--|
|**[Bison](http://www.gnu.org/software/bison)**|Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.|<nobr>3.0.4-GCC-4.9.3-binutils-2.25</br>3.0.2-intel-2015b</br>3.0.4-foss-2015b</br>3.0.4.lua</br>3.0.4-GCCcore-5.4.0.lua</br>3.0.4-GCCcore-6.2.0.lua</br>3.0.4-GCCcore-4.9.3.lua</nobr>|
|**[flex](http://flex.sourceforge.net/)**|Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.|<nobr>2.5.39-GCC-4.9.3-binutils-2.25</br>2.5.39-intel-2015b</br>2.5.37-intel-2015b</br>2.5.39-foss-2015b</br>2.6.0.lua</br>2.6.0-GCCcore-5.4.0.lua</br>2.6.0-GCCcore-6.2.0.lua</br>2.5.39-GCCcore-4.9.3.lua</nobr>|
|**[Java](http://java.com/)**|Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.|<nobr>1.8.0_51</br>1.7.0_79</br>1.8.0_72</nobr>|
|**[Lua](http://www.lua.org/)**|Lua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping.|<nobr>5.1.4-8</nobr>|
|**[NASM](http://www.nasm.us/)**|NASM: General-purpose x86 assembler|<nobr>2.11.08-foss-2015b</nobr>|
|**[Perl](http://www.perl.org/)**|Larry Wall's Practical Extraction and Report Language|<nobr>5.16.3-intel-2015b</br>5.22.2-intel-2017.00.lua</nobr>|
|**[Python](http://python.org/)**|Python is a programming language that lets you work more quickly and integrate your systems more effectively.|<nobr>2.7.9-intel-2015b</br>2.7.9-foss-2015g</br>2.7.9-foss-2015b</br>3.5.2-intel-2017.00.lua</br>3.5.2-foss-2016a.lua</br>2.7.11-foss-2016a.lua</nobr>|
|**[R](http://www.r-project.org/)**|R is a free software environment for statistical computing and graphics.|<nobr>3.1.1-intel-2015b</br>3.2.3-foss-2015b</nobr>|
|**[Tcl](http://www.tcl.tk/)**|Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.|<nobr>8.5.12-intel-2015b</br>8.6.3-foss-2015g</br>8.6.3-intel-2015b</br>8.6.3-foss-2015b</br>8.6.4-foss-2015b</br>8.6.4-intel-2017.00.lua</br>8.6.4-foss-2016a.lua</nobr>|
## Lib
|Module|Description|Available versions|
|--|--|--|
|**[libffi](http://sourceware.org/libffi/)**|The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time.|<nobr>3.1-intel-2015b</br>3.0.13-foss-2015b</br>3.2.1-GCC-4.4.7-system</nobr>|
|**[libjpeg-turbo](http://sourceforge.net/libjpeg-turbo/)**|libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding.|<nobr>1.4.1-foss-2015b</nobr>|
|**[libpng](http://www.libpng.org/pub/png/libpng.html)**|libpng is the official PNG reference library|<nobr>1.6.9-intel-2015b</br>1.6.17-foss-2015b</nobr>|
|**[libreadline](http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html)**|The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.|<nobr>6.3-foss-2015g</br>6.3-intel-2015b</br>6.2-intel-2015b</br>6.3-foss-2015b</br>6.3</br>6.3-intel-2017.00.lua</br>6.3-foss-2016a.lua</nobr>|
|**[libtool](http://www.gnu.org/software/libtool)**|GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.|<nobr>2.4.6-GNU-4.9.3-2.25</br>2.4.6-GNU-5.1.0-2.25</br>2.4.6.lua</br>2.4.6-intel-2017.00.lua</br>2.4.6-foss-2016a.lua</nobr>|
|**[libxml2](http://xmlsoft.org/)**|Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).|<nobr>2.9.2-GCC-4.4.7-system</br>2.9.2-foss-2015b</br>2.9.3-intel-2017.00.lua</nobr>|
|**[PROJ](http://trac.osgeo.org/proj/)**|Program proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates|<nobr>4.8.0-foss-2015b</nobr>|
|**[tbb](http://software.intel.com/en-us/articles/intel-tbb/)**|Intel Threading Building Blocks 4.0 (Intel TBB) is a widely used, award-winning C++ template library for creating reliable, portable, and scalable parallel applications. Use Intel TBB for a simple and rapid way of developing robust task-based parallel applications that scale to available processor cores, are compatible with multiple environments, and are easier to maintain. Intel TBB is the most proficient way to implement future-proof parallel applications that tap into the power and performance of multicore and manycore hardware platforms.|<nobr>4.4.2.152</nobr>|
|**[zlib](http://www.zlib.net/)**|zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.|<nobr>1.2.8-GCC-4.9.3-binutils-2.25</br>1.2.8</br>1.2.8-GCC-5.1.0-binutils-2.25</br>1.2.8-intel-2015b</br>1.2.8-foss-2015g</br>1.2.7-intel-2015b</br>1.2.8-foss-2015b</br>1.2.8-GCC-4.4.7-system</br>1.2.8.lua</br>1.2.8-GCCcore-5.4.0.lua</br>1.2.8-GCCcore-6.2.0.lua</br>1.2.8-intel-2017.00.lua</br>1.2.8-GCCcore-4.9.3.lua</br>1.2.8-foss-2016a.lua</nobr>|
## Math
|Module|Description|Available versions|
|--|--|--|
|**GMP**|&nbsp;|<nobr>6.1.0-intel-2017.00.lua</br>6.1.0-foss-2016a.lua</nobr>|
|**[SCOTCH](http://gforge.inria.fr/projects/scotch/)**|Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.|<nobr>6.0.3-intel-2015b</br>6.0.0_esmumps-intel-2015b</nobr>|
## Mpi
|Module|Description|Available versions|
|--|--|--|
|**[impi](http://software.intel.com/en-us/intel-mpi-library/)**|The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.|<nobr>5.0.3.048-iccifort-2015.3.187-GNU-5.1.0-2.25</br>2017.0.098-iccifort-2017.0.098-GCC-5.4.0-2.26.lua</nobr>|
|**[OpenMPI](http://www.open-mpi.org/)**|The Open MPI Project is an open source MPI-2 implementation.|<nobr>1.8.8-GNU-4.9.3-2.25</br>1.8.6-GNU-5.1.0-2.25</br>1.8.6-GCC-4.4.7-system</br>1.10.1-GNU-4.9.3-2.25</br>1.10.2-GCC-4.9.3-2.25.lua</nobr>|
## Numlib
|Module|Description|Available versions|
|--|--|--|
|**[FFTW](http://www.fftw.org)**|FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.|<nobr>3.3.4-gompi-2015b</br>3.3.4-gompi-2015e</br>3.3.4-gompi-2015g</br>3.3.4-intel-2015b</br>3.3.5-intel-2017.00.lua</br>3.3.4-gompi-2016a.lua</br>3.3.5-foss-2016a.lua</nobr>|
|**[imkl](http://software.intel.com/en-us/intel-mkl/)**|Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines for science, engineering, and financial applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.|<nobr>11.2.3.187-iimpi-7.3.5-GNU-5.1.0-2.25</br>2017.0.098-iimpi-2017.00-GCC-5.4.0-2.26.lua</nobr>|
|**[OpenBLAS](http://xianyi.github.com/OpenBLAS/)**|OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.|<nobr>0.2.14-GNU-5.1.0-2.25-LAPACK-3.5.0</br>0.2.14-gompi-2015e-LAPACK-3.5.0</br>0.2.14-GNU-4.9.3-2.25-LAPACK-3.5.0</br>0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0.lua</nobr>|
|**[ScaLAPACK](http://www.netlib.org/scalapack/)**|The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.|<nobr>2.0.2-gompi-2015b-OpenBLAS-0.2.14-LAPACK-3.5.0</br>2.0.2-gompi-2015e-OpenBLAS-0.2.14-LAPACK-3.5.0</br>2.0.2-gompi-2015g-OpenBLAS-0.2.14-LAPACK-3.5.0</br>2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0.lua</nobr>|
## Phys
|Module|Description|Available versions|
|--|--|--|
|**[VASP](http://www.vasp.at)**|The Vienna Ab initio Simulation Package (VASP) is a computer program for atomic scale materials modelling, e.g. electronic structure calculations and quantum-mechanical molecular dynamics, from first principles.|<nobr>5.4.1-intel-2015b-24Jun15-UV</nobr>|
## System
|Module|Description|Available versions|
|--|--|--|
|**[hwloc](http://www.open-mpi.org/projects/hwloc/)**|The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently.|<nobr>1.11.0-GNU-4.9.3-2.25</br>1.11.0-GNU-5.1.0-2.25</br>1.11.2-GCC-4.9.3-2.25.lua</nobr>|
## Toolchain
|Module|Description|Available versions|
|--|--|--|
|**[foss]((none))**|GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.|<nobr>2015b</br>2015e</br>2015g</br>2016a.lua</nobr>|
|**[GNU](http://www.gnu.org/software/)**|Compiler-only toolchain with GCC and binutils.|<nobr>4.9.3-2.25</br>5.1.0-2.25</nobr>|
|**[gompi]((none))**|GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.|<nobr>2015g</br>2015b</br>2015e</br>2016a.lua</nobr>|
|**[iccifort](http://software.intel.com/en-us/intel-cluster-toolkit-compiler/)**|Intel C, C++ and Fortran compilers|<nobr>2015.3.187-GNU-5.1.0-2.25</br>2017.0.098-GCC-5.4.0-2.26.lua</nobr>|
|**[iimpi](http://software.intel.com/en-us/intel-cluster-toolkit-compiler/)**|Intel C/C++ and Fortran compilers, alongside Intel MPI.|<nobr>7.3.5-GNU-5.1.0-2.25</br>2017.00-GCC-5.4.0-2.26.lua</nobr>|
|**[intel](http://software.intel.com/en-us/intel-cluster-toolkit-compiler/)**|Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL.|<nobr>2015b</br>2017.00.lua</nobr>|
|**[PRACE](http://www.prace-ri.eu/PRACE-Common-Production)**|The PRACE Common Production Environment (PCPE) is a set of software tools and libraries that are planned to be available on all PRACE execution sites. The PCPE also defines a set of environment variables that try to make compilation on all sites as homogeneous and simple as possible.|<nobr>20150630-intel-2015b</nobr>|
## Tools
|Module|Description|Available versions|
|--|--|--|
|**[Bash](http://www.gnu.org/software/bash)**|Bash is an sh-compatible command language interpreter that executes commands read from the standard input or from a file. Bash also incorporates useful features from the Korn and C shells (ksh and csh).|<nobr>4.2-intel-2015b</nobr>|
|**[binutils](http://directory.fsf.org/project/binutils/)**|binutils: GNU binary utilities|<nobr>2.25-GCC-4.9.3-binutils-2.25</br>2.25</br>2.25-GCC-5.1.0-binutils-2.25</br>2.26.lua</br>2.26-GCCcore-5.4.0.lua</br>2.27.lua</br>2.27-GCCcore-6.2.0.lua</br>2.25-GCCcore-4.9.3.lua</nobr>|
|**[bzip2](http://www.bzip.org/)**|bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.|<nobr>1.0.6-intel-2015b</br>1.0.6-foss-2015g</br>1.0.6-foss-2015b</br>1.0.6-intel-2017.00.lua</br>1.0.6-foss-2016a.lua</nobr>|
|**[cURL](http://curl.haxx.se)**|libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more.|<nobr>7.37.1-intel-2015b</br>7.45.0-foss-2015b</br>7.37.1.lua</br>7.51.0-intel-2017.00.lua</nobr>|
|**[EasyBuild](http://hpcugent.github.com/easybuild/)**|EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.|<nobr>3.0.2</nobr>|
|**[expat](http://expat.sourceforge.net/)**|Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags)|<nobr>2.1.0-foss-2015b</br>2.1.0.lua</br>2.1.0-intel-2017.00.lua</nobr>|
|**git**|&nbsp;|<nobr>2.8.0-intel-2017.00.lua</br>2.11.0-intel-2017.00.lua</nobr>|
|**[gzip](http://www.gnu.org/software/gzip/)**|gzip (GNU zip) is a popular data compression program as a replacement for compress|<nobr>1.6-foss-2015g</nobr>|
|**MATLAB**|&nbsp;|<nobr>2015a-COM</br>2015a-EDU</nobr>|
|**[Mercurial](http://mercurial.selenic.com/)**|Mercurial is a free, distributed source control management tool. It efficiently handles projects of any size and offers an easy and intuitive interface.|<nobr>3.7.3-foss-2015g-Python-2.7.9</nobr>|
|**[numactl](http://oss.sgi.com/projects/libnuma/)**|The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.|<nobr>2.0.10-GNU-4.9.3-2.25</br>2.0.10-GNU-5.1.0-2.25</br>2.0.11-GCC-4.9.3-2.25.lua</nobr>|
|**pigz**|&nbsp;|<nobr>2.3.3-GCC-6.2.0-2.27.lua</nobr>|
|**[QEMU](http://wiki.qemu.org/Main_Page)**|QEMU is a generic and open source machine emulator and virtualizer.|<nobr>2.1.2-foss-2015b</br>2.1.2-GCC-4.4.7-system</br>2.1.2-GCC-4.4.7-system-VDE2</nobr>|
|**[Szip](http://www.hdfgroup.org/doc_resource/SZIP/)**|Szip compression software, providing lossless compression of scientific data|<nobr>2.1-intel-2015b</br>2.1-foss-2015b</br>2.1-foss-2016a.lua</nobr>|
|**[tcsh](http://www.tcsh.org)**|Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). It is a command language interpreter usable both as an interactive login shell and a shell script command processor. It includes a command-line editor, programmable word completion, spelling correction, a history mechanism, job control and a C-like syntax.|<nobr>6.18.01-intel-2015b</nobr>|
|**[VDE2](http://vde.sourceforge.net)**|VDE is an ethernet compliant virtual network that can be spawned over a set of physical computer over the Internet. VDE is part of virtualsquare project.|<nobr>2.3.2-GCC-4.4.7-system</nobr>|
|**[VTune](http://software.intel.com/en-us/intel-vtune-amplifier-xe)**|Intel VTune Amplifier XE 2016 is the premier performance profiler for C, C++, C#, Fortran, Assembly and Java.|<nobr>2016_update1</nobr>|
|**XZ**|&nbsp;|<nobr>5.2.2-intel-2017.00.lua</br>5.2.2-foss-2016a.lua</nobr>|
## Vis
|Module|Description|Available versions|
|--|--|--|
|**[gettext](http://www.gnu.org/software/gettext/)**|GNU `gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation|<nobr>0.19.2-intel-2015b</br>0.19.2-foss-2015b</br>0.19.4-GCC-4.4.7-system</br>0.19.2.lua</br>0.19.7-intel-2017.00.lua</br>0.19.6-foss-2016a.lua</nobr>|
|**[GLib](http://www.gtk.org/)**|GLib is one of the base libraries of the GTK+ project|<nobr>2.40.0-intel-2015b</br>2.40.0-foss-2015b</br>2.40.0-GCC-4.4.7-system</nobr>|
|**[Tk](http://www.tcl.tk/)**|Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.|<nobr>8.5.12-intel-2015b</br>8.6.3-foss-2015b-no-X11</br>8.6.4-foss-2015b-no-X11</br>8.6.4-intel-2017.00-no-X11.lua</br>8.6.4-foss-2016a-no-X11.lua</nobr>|
|**[VisIt](https://wci.llnl.gov/simulation/computer-codes/visit)**|VisIt is an Open Source, interactive, scalable, visualization, animation and analysis tool|<nobr>2.10.0</nobr>|
| Name | Version |
| ---- | ------: |
| modulename | 3.0.3 |
# List of Available Modules
## Core
|Module|Description|Available versions|Clusters|
|--|--|--|--|
|**lmod**|&nbsp;|<nobr>7.2.2.lua</nobr>|AS|
|**settarg**|&nbsp;|<nobr>7.2.2.lua</nobr>|AU|
## Bio
|Module|Description|Available versions|Clusters|
|--|--|--|--|
|**[almost](http://www-almost.ch.cam.ac.uk/site)**|all atom molecular simulation toolkit - is a fast and flexible molecular modeling environment that provides powerful and efficient algorithms for molecular simulation, homology modeling, de novo design and ab-initio calculations.|<nobr>2.1.0-intel-2015b</br>2.1.0-foss-2015b</br>2.1.0-foss-2015g</nobr>|AS-</br>--S</br>A--|
|**[Amber](http://ambermd.org)**|A set of molecular mechanical force fields for the simulation of biomolecules|<nobr>14</nobr>|-SU|
|**[BCFtools](http://www.htslib.org/)**|Samtools is a suite of programs for interacting with high-throughput sequencing data. BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants|<nobr>1.3-foss-2015g</nobr>|ASU|
|**[BWA](http://bio-bwa.sourceforge.net/)**|Burrows-Wheeler Aligner (BWA) is an efficient program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome.|<nobr>0.7.5a-foss-2015g</nobr>|--U|
|**[FastQC](http://www.bioinformatics.babraham.ac.uk/projects/fastqc/)**|FastQC is a quality control application for high throughput sequence data. It reads in sequence data in a variety of formats and can either provide an interactive application to review the results of several different QC checks, or create an HTML based report which can be integrated into a pipeline.|<nobr>0.11.3</nobr>|---|
## Cae
|Module|Description|Available versions|
|--|--|--|
|**Adams**|&nbsp;|<nobr>2013.2</nobr>|
|**ANSYS**|&nbsp;|<nobr>16.1</br>17.0</nobr>|
|**COMSOL**|&nbsp;|<nobr>51-COM</br>51-EDU</nobr>|
|**Digimat**|&nbsp;|<nobr>5.0.1-COM</br>5.0.1-EDU</nobr>|
|**[FreeFem++](http://www.freefem.org)**|FreeFem++ is a partial differential equation solver. It has its own language. freefem scripts can solve multiphysics non linear systems in 2D and 3D. Problems involving PDE (2d, 3d) from several branches of physics such as fluid-structure interactions require interpolations of data on several meshes and their manipulation within one program. FreeFem++ includes a fast 2^d-tree-based interpolation algorithm and a language for the manipulation of data on multiple meshes (as a follow up of bamg (now a part of FreeFem++ ). FreeFem++ is written in C++ and the FreeFem++ language is a C++ idiom. It runs on Macs, Windows, Unix machines. FreeFem++ replaces the older freefem and freefem+.|<nobr>3.45-intel-2015b</nobr>|
|**HyperWorks**|&nbsp;|<nobr>13.0</nobr>|
|**Marc**|&nbsp;|<nobr>2013.1.0</nobr>|
|**[OpenFOAM](http://www.openfoam.com/)**|OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics.|<nobr>2.3.0-intel-2015b</br>2.2.2-intel-2015b</br>3.0.0-intel-2016.01</nobr>|
## Chem
|Module|Description|Available versions|
|--|--|--|
|**[ABINIT](http://www.abinit.org/)**|Abinit is a plane wave pseudopotential code for doing condensed phase electronic structure calculations using DFT.|<nobr>7.10.1-foss-2015b</br>7.10.1-intel-2015b</nobr>|
|**[CP2K](http://www.cp2k.org/)**|CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and classical pair and many-body potentials.|<nobr>2.6.0-intel-2015b</nobr>|
|**[LAMMPS](http://lammps.sandia.gov)**|LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. Has potentials for solid-state materials (metals, semiconductors) and soft matter (biomolecules, polymers) and coarse-grained or mesoscopic systems. It can be used to model atoms or, more generically, as a parallel particle simulator at the atomic, meso, or continuum scale.|<nobr>28Jun14-intel-2015b</nobr>|
|**[libctl](http://ab-initio.mit.edu/libctl)**|libctl is a free Guile-based library implementing flexible control files for scientific simulations.|<nobr>3.2.2-intel-2015b</nobr>|
|**[Libint](https://sourceforge.net/p/libint/)**|Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.|<nobr>1.1.4-gompi-2015b</br>1.1.4-foss-2015b</br>1.1.4-intel-2015b</nobr>|
|**[libxc](http://www.tddft.org/programs/octopus/wiki/index.php/Libxc)**|Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.|<nobr>2.2.0-gompi-2015b</br>2.2.0-foss-2015b</br>2.2.1-intel-2015b</nobr>|
|**Molpro**|&nbsp;|<nobr>2010.1-patch-57-intel2015b</nobr>|
|**[NAMD](http://www.ks.uiuc.edu/Research/namd/)**|NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems.|<nobr>2.9-mpi</nobr>|
|**[NWChem](http://www.nwchem-sw.org)**|NWChem aims to provide its users with computational chemistry tools that are scalable both in their ability to treat large scientific computational chemistry problems efficiently, and in their use of available parallel computing resources from high-performance parallel supercomputers to conventional workstation clusters. NWChem software can handle: biomolecules, nanostructures, and solid-state; from quantum to classical, and all combinations; Gaussian basis functions or plane-waves; scaling from one to thousands of processors; properties and relativity.|<nobr>6.3.revision2-2013-10-17-Python-2.7.8</br>6.5.revision26243-intel-2015b-2014-09-10-Python-2.7.8</nobr>|
|**[ORCA](http://cec.mpg.de/forum/)**|ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules. It features a wide variety of standard quantum chemical methods ranging from semiempirical methods to DFT to single- and multireference correlated ab initio methods. It can also treat environmental and relativistic effects.|<nobr>3_0_3-linux_x86-64</nobr>|
|**[QuantumESPRESSO](http://www.pwscf.org/)**|Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft).|<nobr>5.4.0-intel-2017.00</nobr>|
|**[S4MPLE](http://infochim.u-strasbg.fr/spip.php?rubrique152)**|S4MPLE (Sampler For Multiple Protein-Ligand Entities) is a flexible molecular modeling tool, supporting empirical force field-driven conformational sampling and geometry optimization heuristics using a hybrid genetic algorithm (GA).|<nobr>1.0.0</nobr>|
|**Scipion**|&nbsp;|<nobr>1.0.1-Java-8u112-intel-2017.00</nobr>|
|**[xdrfile](http://www.gromacs.org/Developer_Zone/Programming_Guide/XTC_Library)**|XTC library|<nobr>1.1.4-foss-2015g</nobr>|
## Compiler
|Module|Description|Available versions|
|--|--|--|
|**[BerkeleyUPC](http://upc.lbl.gov)**|The goal of the Berkeley UPC compiler group is to develop a portable, high performance implementation of UPC for large-scale multiprocessors, PC clusters, and clusters of shared memory multiprocessors.|<nobr>2.16.2-gompi-2015b</nobr>|
|**[Clang](http://clang.llvm.org/)**|C, C++, Objective-C compiler, based on LLVM. Does not include C++ standard library -- use libstdc++ from GCC.|<nobr>3.7.0-GNU-5.1.0-2.25</nobr>|
|**[GCC](http://gcc.gnu.org/)**|The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).|<nobr>4.9.2-binutils-2.25</br>4.8.3</br>5.1.0-binutils-2.25</br>4.4.7-system</br>4.9.3-binutils-2.25</br>4.7.4</br>5.2.0</br>4.9.3</br>5.3.0-binutils-2.25</br>5.3.0-2.25</br>5.3.1-snapshot-20160419-2.25</br>4.9.3-2.25</br>5.3.0-2.26</br>4.9.2</br>5.4.0-2.26</br>6.2.0-2.27.lua</nobr>|
|**[GCCcore](http://gcc.gnu.org/)**|The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).|<nobr>4.9.3</br>5.3.0</br>5.3.1-snapshot-20160419</br>5.4.0</br>6.2.0.lua</nobr>|
|**[icc](http://software.intel.com/en-us/intel-compilers/)**|C and C++ compiler from Intel|<nobr>2013.5.192</br>2013.5.192-GCC-4.8.3</br>2015.3.187</br>2015.3.187-GNU-5.1.0-2.25</br>2016.0.109-GCC-4.9.3</br>2016.1.150-GCC-4.9.3</br>2016.1.150</br>2016.3.210-GCC-5.3.0-2.26</br>2015.3.187-GNU-4.9.3-2.25</br>2016.1.150-GCC-4.9.3-2.25</br>2017.0.098-GCC-5.4.0-2.26</nobr>|
|**[ifort](http://software.intel.com/en-us/intel-compilers/)**|Fortran compiler from Intel|<nobr>2013.5.192</br>2013.5.192-GCC-4.8.3</br>2015.3.187</br>2015.3.187-GNU-5.1.0-2.25</br>2016.0.109-GCC-4.9.3</br>2016.1.150-GCC-4.9.3</br>2016.1.150-GCC-4.9.3-2.25</br>2016.1.150</br>2016.3.210-GCC-5.3.0-2.26</br>2015.3.187-GNU-4.9.3-2.25</br>2017.0.098-GCC-5.4.0-2.26</nobr>|
|**[LLVM](http://llvm.org/)**|The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator.|<nobr>3.7.1-foss-2015g</br>3.7.1-intel-2016a</br>3.8.0-foss-2016a</br>3.8.0-intel-2016a</br>3.9.0-intel-2017.00</nobr>|
|**[OpenCoarrays](http://www.opencoarrays.org/)**|A transport layer for coarray Fortran compilers.|<nobr>1.4.0-GCC-5.3.0-2.25</br>1.4.0-GCC-5.3.1-snapshot-20160419-2.25</nobr>|
|**PGI**|&nbsp;|<nobr>15.7</br>16.10-GNU-4.9.3-2.25</nobr>|
## Data
|Module|Description|Available versions|
|--|--|--|
|**[GDAL](http://www.gdal.org/)**|GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.|<nobr>1.9.2-foss-2015g</br>2.1.0-foss-2015g</br>2.0.1-foss-2015b</br>2.1.0-GNU-5.1.0-2.25-intel-2015b</br>2.1.0-GNU-5.1.0-2.25</br>2.1.0-intel-2015b</br>2.0.2-intel-2017.00</nobr>|
|**[h5py](http://www.h5py.org/)**|HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data.|<nobr>2.4.0-ictce-7.3.5-Python-2.7.9-serial</nobr>|
|**[HDF5](http://www.hdfgroup.org/HDF5/)**|HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.|<nobr>1.8.13-intel-2015b</br>1.8.13-intel-2015b-no-mpi</br>1.8.14-ictce-7.3.5-serial</br>1.8.13-intel-2016.01</br>1.8.13-foss-2015g</br>1.8.16-intel-2015b</br>1.8.16-intel-2015b-threadsafe</br>1.8.16-foss-2015g</br>1.10.0-patch1-intel-2016.01-mic</br>1.8.15-patch1-foss-2015b</br>1.8.16-foss-2016a</br>1.8.16-intel-2017.00</nobr>|
|**[netCDF](http://www.unidata.ucar.edu/software/netcdf/)**|NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.|<nobr>4.3.2-intel-2015b</br>4.3.2-intel-2016.01</br>4.3.2-foss-2015g</br>4.3.3.1-foss-2015b</br>4.4.0-intel-2017.00</br>4.3.3.1-intel-2017.00</nobr>|
|**[netCDF-Fortran](http://www.unidata.ucar.edu/software/netcdf/)**|NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.|<nobr>4.4.0-intel-2016.01</nobr>|
## Debugger
|Module|Description|Available versions|
|--|--|--|
|**aislinn**|&nbsp;|<nobr>20160105-Python-2.7.9-gompi-2015e</nobr>|
|**DDT**|&nbsp;|<nobr>4.2</br>5.0.1</nobr>|
|**[Forge](http://www.allinea.com/products/develop-allinea-forge)**|Allinea Forge is the complete toolsuite for software development - with everything needed to debug, profile, optimize, edit and build C, C++ and FORTRAN applications on Linux for high performance - from single threads through to complex parallel HPC codes with MPI, OpenMP, threads or CUDA.|<nobr>5.1-43967</br>6.0.6</br>6.0.5</br>6.1.2.lua</nobr>|
|**[PerformanceReports](http://www.allinea.com/products/allinea-performance-reports)**|Allinea Performance Reports are the most effective way to characterize and understand the performance of HPC application runs. One single-page HTML report elegantly answers a range of vital questions for any HPC site. - Is this application well-optimized for the system and the processors it is running on? - Does it benefit from running at this scale? - Are there I/O, networking or threading bottlenecks affecting performance? - Which hardware, software or configuration changes can we make to improve performance further. - How much energy did this application use?|<nobr>5.1-43967</br>6.0.6</nobr>|
|**TotalView**|&nbsp;|<nobr>8.15.4-6-linux-x86-64</nobr>|
|**[Valgrind](http://valgrind.org/downloads/)**|Valgrind: Debugging and profiling tools|<nobr>3.11.0-foss-2015b</br>3.11.0-intel-2015b</nobr>|
## Devel
|Module|Description|Available versions|
|--|--|--|
|**[ant](http://ant.apache.org/)**|Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications.|<nobr>1.9.3-Java-1.7.0_79</nobr>|
|**[Autoconf](http://www.gnu.org/software/autoconf/)**|Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.|<nobr>2.69-GNU-5.1.0-2.25</br>2.69-GNU-4.9.3-2.25</br>2.69-foss-2015g</br>2.69-intel-2015b</br>2.69-GCC-4.9.3-2.25</br>2.69-intel-2016.01</br>2.69</br>2.69-intel-2017.00</br>2.69-intel-2016a</br>2.69-foss-2016a</nobr>|
|**[Automake](http://www.gnu.org/software/automake/automake.html)**|Automake: GNU Standards-compliant Makefile generator|<nobr>1.15-GNU-5.1.0-2.25</br>1.15-GNU-4.9.3-2.25</br>1.15-intel-2015b</br>1.15-GCC-4.9.3-2.25</br>1.15-foss-2015g</br>1.15-intel-2016.01</br>1.15</br>1.15-intel-2017.00</br>1.15-intel-2016a</br>1.15-foss-2016a</nobr>|
|**[Autotools](http://autotools.io)**|This bundle collect the standard GNU build tools: Autoconf, Automake and libtool|<nobr>20150215-GNU-5.1.0-2.25</br>20150215-GNU-4.9.3-2.25</br>20150215-intel-2015b</br>20150215-GCC-4.9.3-2.25</br>20150215-intel-2016.01</br>20150215</br>20150215-intel-2017.00</br>20150215-intel-2016a</br>20150215-foss-2016a</nobr>|
|**[Boost](http://www.boost.org/)**|Boost provides free peer-reviewed portable C++ source libraries.|<nobr>1.58.0-Python-2.7.9</br>1.58.0-intel-2015b-Python-2.7.9</br>1.58.0-ictce-7.3.5-Python-2.7.9</br>1.58.0-gompi-2015e-Python-2.7.9</br>1.58.0-foss-2015g-Python-2.7.9</br>1.58.0-intel-2016.01-Python-2.7.9</br>1.59.0-intel-2015b-Python-2.7.11</br>1.59.0-intel-2016.01</br>1.60.0-foss-2015g-Python-2.7.9</br>1.60.0-intel-2015b-Python-2.7.11</br>1.61.0-foss-2016a</br>1.61.0-foss-2016a-serial</nobr>|
|**[CMake](http://www.cmake.org)**|CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.|<nobr>3.0.0-intel-2015b</br>3.0.0-ictce-7.3.5</br>3.3.1-GNU-5.1.0-2.25</br>3.3.1-GNU-4.9.3-2.25</br>3.3.1-foss-2015g</br>3.0.0-intel-2016.01</br>3.3.1-intel-2016.01</br>3.0.0-foss-2015g</br>3.4.1-intel-2015b</br>3.3.1-GCC-5.3.0-2.25</br>3.3.1-GCC-5.3.1-snapshot-20160419-2.25</br>3.3.2-intel-2016.01</br>3.3.2-GNU-4.9.3-2.25</br>3.4.1-GCCcore-4.9.3</br>3.4.1-foss-2015b</br>3.5.2</br>3.5.2-GCC-4.9.3-2.25</br>3.5.2-intel-2017.00</br>3.5.2-foss-2016a</br>3.4.3-intel-2016a</br>3.5.1-intel-2016a</br>3.6.2.lua</nobr>|
|**[Doxygen](http://www.doxygen.org)**|Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.|<nobr>1.8.7-intel-2015b</br>1.8.7-intel-2016.01</br>1.8.7-foss-2015g</br>1.8.10-foss-2015b</br>1.8.11</br>1.8.10-intel-2017.00</br>1.8.11-intel-2017.00</nobr>|
|**[fontsproto](http://www.freedesktop.org/wiki/Software/xlibs)**|X11 font extension wire protocol|<nobr>2.1.3-foss-2015g</br>2.1.3</br>2.1.3-intel-2016a</br>2.1.3-foss-2016a</nobr>|
|**[glproto](http://www.freedesktop.org/wiki/Software/xlibs)**|X protocol and ancillary headers|<nobr>1.4.16-foss-2015g</br>1.4.17-intel-2016a</br>1.4.17-foss-2016a</nobr>|
|**[gperf](http://www.gnu.org/software/gperf/)**|GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only.|<nobr>3.0.4-foss-2015g</br>3.0.4-intel-2016a</br>3.0.4-foss-2016a</nobr>|
|**[guile](http://www.gnu.org/software/guile)**|Guile is the GNU Ubiquitous Intelligent Language for Extensions, the official extension language for the GNU operating system.|<nobr>1.8.8-intel-2015b</br>1.8.8-foss-2015b</br>1.8.8-foss-2015g</br>1.8.8</nobr>|
|**[JUnit](http://sourceforge.net/projects/junit)**|A programmer-oriented testing framework for Java.|<nobr>4.11-Java-1.7.0_79</nobr>|
|**[libSM](http://www.freedesktop.org/wiki/Software/xlibs)**|X11 Session Management library, which allows for applications to both manage sessions, and make use of session managers to save and restore their state for later use.|<nobr>1.2.2-intel-2015b</br>1.2.2-foss-2015g</br>1.2.2</nobr>|
|**[M4](http://www.gnu.org/software/m4/m4.html)**|GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.|<nobr>1.4.17</br>1.4.17-GNU-5.1.0-2.25</br>1.4.17-foss-2015b</br>1.4.17-intel-2015b</br>1.4.16-intel-2015b</br>1.4.17-GCC-4.9.3-binutils-2.25</br>1.4.17-GNU-4.9.3-2.25</br>1.4.17-GCCcore-4.9.3</br>1.4.17-intel-2016.01</br>1.4.16-foss-2015g</br>1.4.17-foss-2015g</br>1.4.17-GCC-5.1.0-binutils-2.25</br>1.4.17-GCCcore-5.3.0</br>1.4.17-GCCcore-5.3.1-snapshot-20160419</br>1.4.17-GCC-4.9.3-2.25</br>1.4.17-GCCcore-5.4.0</br>1.4.17-intel-2017.00</br>1.4.17-intel-2016a</br>1.4.17-foss-2016a</br>1.4.17-GCCcore-6.2.0.lua</nobr>|
|**[make](http://www.gnu.org/software/make/make.html)**|make-3.82: GNU version of make utility|<nobr>3.82-intel-2015b</br>3.82</nobr>|
|**[makedepend](http://www.linuxfromscratch.org/blfs/view/svn/x/makedepend.html)**|The makedepend package contains a C-preprocessor like utility to determine build-time dependencies.|<nobr>1.0.4-foss-2015g</br>1.0.4</br>1.0.5-intel-2016a</br>1.0.5-foss-2016a</nobr>|
|**[Maven](http://maven.apache.org/index.html)**|Binary maven install, Apache Maven is a software project management and comprehension tool. Based on the concept of a project object model (POM), Maven can manage a project's build, reporting and documentation from a central piece of information.|<nobr>3.3.9</nobr>|
|**[ncurses](http://www.gnu.org/software/ncurses/)**|The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.|<nobr>5.9-intel-2015b</br>5.9-ictce-5.5.0</br>5.9-GNU-5.1.0-2.25</br>5.9-ictce-7.3.5</br>5.9-foss-2015b</br>5.9-gompi-2015e</br>5.9-foss-2015g</br>5.9-GNU-4.9.3-2.25</br>5.9-intel-2016.01</br>5.9-GCC-5.3.0-2.25</br>5.9-GCC-5.3.1-snapshot-20160419-2.25</br>6.0-GCCcore-4.9.3</br>6.0-foss-2015g</br>6.0-foss-2015b</br>6.0-intel-2016.01</br>6.0</br>5.9</br>6.0-intel-2016a</br>6.0-intel-2017.00</br>6.0-foss-2016a</br>.6.0</nobr>|
|**[PCRE](http://www.pcre.org/)**|The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.|<nobr>8.36-intel-2015b</br>8.36-foss-2015g</br>8.37-foss-2015g</br>8.36-intel-2016.01</br>8.37</br>8.39-intel-2017.00</nobr>|
|**[PCRE2](http://www.pcre.org/)**|The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.|<nobr>10.22-intel-2017.00</nobr>|
|**[pkg-config](http://www.freedesktop.org/wiki/Software/pkg-config/)**|pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0` for instance, rather than hard-coding values on where to find glib (or other libraries).|<nobr>0.27.1-intel-2015b</br>0.27.1-foss-2015b</br>0.27.1-foss-2015g</br>0.27.1</br>0.29</br>0.29-intel-2016a</br>0.29-foss-2016a</br>0.29.1-intel-2016a</br>0.29.1-foss-2016a</nobr>|
|**[python-meep](https://code.launchpad.net/python-meep)**|Python wrapper for the Meep FDTD solver.|<nobr>1.4.2-intel-2015b-Python-2.7.9-Meep-1.3</nobr>|
|**[Qt](http://qt-project.org/)**|Qt is a comprehensive cross-platform C++ application framework.|<nobr>4.8.6-foss-2015g</br>4.8.6</nobr>|
|**[renderproto](http://www.freedesktop.org/wiki/Software/xlibs)**|Xrender protocol and ancillary headers|<nobr>0.11-intel-2015b</br>0.11</nobr>|
|**[SCons](http://www.scons.org/)**|SCons is a software construction tool.|<nobr>2.3.6-Python-2.7.9</br>2.3.6-foss-2015g-Python-2.7.9</nobr>|
|**[Spark](http://spark.apache.org)**|Spark is Hadoop MapReduce done in memory|<nobr>1.5.2</nobr>|
|**[SQLite](http://www.sqlite.org/)**|SQLite: SQL Database Engine in a C Library|<nobr>3.8.8.1-intel-2015b</br>3.8.8.1-ictce-7.3.5</br>3.8.8.1-foss-2015b</br>3.8.8.1-GNU-5.1.0-2.25</br>3.8.8.1-gompi-2015e</br>3.8.8.1-intel-2016.01</br>3.10.1-foss-2015g</br>3.9.2-intel-2015b</br>3.8.8.1-foss-2015g</br>3.8.10.2-GNU-4.9.3-2.25</br>3.8.10.2-GCC-4.9.3-2.25</br>3.9.2-foss-2015g</br>3.9.2-intel-2016.01</br>3.8.8.1</br>3.9.2-GCC-4.9.3-2.25</br>3.9.2-intel-2017.00</br>3.9.2-intel-2016a</br>3.9.2-foss-2016a</nobr>|
|**[SWIG](http://www.swig.org/)**|SWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.|<nobr>3.0.7-Python-2.7.9</br>2.0.12-Python-2.7.9</br>2.0.12-intel-2015b-Python-2.7.9</nobr>|
|**[xbitmaps](http://www.freedesktop.org/wiki/Software/xlibs)**|provides bitmaps for x|<nobr>1.1.1-intel-2015b</br>1.1.1-foss-2015g</br>1.1.1</nobr>|
|**[xcb-proto](http://xcb.freedesktop.org/)**|The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.|<nobr>1.10-Python-2.7.8</br>1.11-intel-2015b-Python-2.7.9</br>1.11-foss-2015g-Python-2.7.9</br>1.11-Python-2.7.9</br>1.11</nobr>|
|**[xextproto](http://www.freedesktop.org/wiki/Software/xlibs)**|XExtProto protocol headers.|<nobr>7.3.0-intel-2015b</br>7.3.0-foss-2015g</br>7.3.0</br>7.3.0-intel-2016a</br>7.3.0-foss-2016a</nobr>|