Commit 63856c2b authored by Lubomir Prda's avatar Lubomir Prda

Sonsolidated Anselm and Salomon software to single navigation page. Not displaying in menu anymore.

parent eaa76399
Salomon Cluster Software
===
## [Modules](../../modules-anselm)
* List of available modules
## [COMSOL](comsol-multiphysics)
* A finite element analysis, solver and Simulation software
## [ParaView](paraview)
* An open-source, multi-platform data analysis and visualization application
## [Compilers](compilers)
* Available compilers, including GNU, INTEL and UPC compilers
## [nVidia CUDA](nvidia-cuda)
* A guide to nVidia CUDA programming and GPU usage
## [GPI-2](gpi2)
* A library that implements the GASPI specification
## [OpenFOAM](openfoam)
* A free, open source CFD software package
## [ISV Licenses](isv_licenses)
* A guide to managing Independent Software Vendor licences
## [Intel Xeon Phi](intel-xeon-phi)
* A guide to Intel Xeon Phi usage
## [Virtualization](kvirtualization)
## [Java](java)
* Java on ANSELM
## [Operating System](operating-system)
* The operating system, deployed on ANSELM
## Intel Suite
* The Intel Parallel Studio XE
### [Introduction](intel-suite/introduction)
### [Intel MKL](intel-suite/intel-mkl)
### [Intel Compilers](intel-suite/intel-compilers)
### [Intel IPP](intel-suite/intel-integrated-performance-primitives)
### [Intel TBB](intel-suite/intel-tbb)
### [Intel Debugger](intel-suite/intel-debugger)
## MPI
* Message Passing Interface libraries
### [Introduction](mpi/mpi)
### [MPI4Py (MPI for Python)](mpi/mpi4py-mpi-for-python)
### [Running OpenMPI](mpi/Running_OpenMPI)
### [Running MPICH2](mpi/running-mpich2)
## Numerical Libraries
* Libraries for numerical computations
### [Intel numerical libraries](numerical-libraries/intel-numerical-libraries)
### [PETSc](numerical-libraries/petsc)
### [Trilinos](numerical-libraries/trilinos)
### [FFTW](numerical-libraries/fftw)
### [GSL](numerical-libraries/gsl)
### [MAGMA for Intel Xeon Phi](numerical-libraries/magma-for-intel-xeon-phi)
### [HDF5](numerical-libraries/hdf5)
## Omics Master
### [Diagnostic component (TEAM)](omics-master/diagnostic-component-team)
### [Priorization component (BiERApp)](omics-master/priorization-component-bierapp)
### [Overview](omics-master/overview)
## Debuggers
* A collection of development tools
### [Valgrind](debuggers/valgrind)
### [PAPI](debuggers/papi)
### [Allinea Forge (DDT,MAP)](debuggers/allinea-ddt)
### [Total View](debuggers/total-view)
### [CUBE](debuggers/cube)
### [Intel VTune Amplifier](debuggers/intel-vtune-amplifier)
### [VNC](debuggers/debuggers)
### [Scalasca](debuggers/scalasca)
### [Score-P](debuggers/score-p)
### [Intel Performance Counter Monitor](debuggers/intel-performance-counter-monitor)
### [Allinea Performance Reports](debuggers/allinea-performance-reports)
### [Vampir](debuggers/vampir)
## Numerical Languages
* Interpreted languages for numerical computations
### [Introduction](numerical-languages/introduction)
### [R](numerical-languages/r)
### [Matlab 2013-2014](numerical-languages/matlab_1314)
### [Matlab](numerical-languages/matlab)
### [Octave](numerical-languages/octave)
## Chemistry
* Tools for computational chemistry
### [Molpro](chemistry/molpro)
### [NWChem](chemistry/nwchem)
## Ansys
* An engineering simulation software
### [Introduction](ansys/ansys)
### [ANSYS CFX](ansys/ansys-cfx)
### [ANSYS LS-DYNA](ansys/ansys-ls-dyna)
### [ANSYS MAPDL](ansys/ansys-mechanical-apdl)
### [LS-DYNA](ansys/ls-dyna)
### [ANSYS Fluent](ansys/ansys-fluent)
......@@ -2,9 +2,63 @@ Salomon Cluster Software
===
## [Modules](../../modules-salomon)
List of Available Modules
## COMSOL
A finite element analysis, solver and Simulation software
### [Introduction](comsol/comsol-multiphysics)
* List of Available Modules
## [Compilers](compilers)
* Available compilers, including GNU, INTEL and UPC compilers
## [Intel Xeon Phi](intel-xeon-phi)
* A guide to Intel Xeon Phi usage
## [Java](java)
* Java on the cluster
## [Operating System](operating-system)
* The operating system, deployed on Salomon cluster
## Intel Suite
* The Intel Parallel Studio XE
### [Introduction](intel-suite/intel-parallel-studio-introduction)
### [Intel MKL](intel-suite/intel-mkl)
### [Intel Compilers](intel-suite/intel-compilers)
### [Intel IPP](intel-suite/intel-integrated-performance-primitives)
### [Intel TBB](intel-suite/intel-tbb)
### [Intel Debugger](intel-suite/intel-debugger)
### [Intel Inspector](intel-suite/intel-inspector)
### [Intel Trace Analyzer and Collector](intel-suite/intel-trace-analyzer-and-collector)
### [Intel Advisor](intel-suite/intel-advisor)
## MPI
* Message Passing Interface libraries
### [Introduction](mpi/mpi)
### [MPI4Py (MPI for Python)](mpi/mpi4py-mpi-for-python)
### [Running OpenMPI](mpi/Running_OpenMPI)
## Debuggers
* A collection of development tools
### [Introduction](debuggers/Introduction)
### [Valgrind](debuggers/valgrind)
### [Allinea Forge (DDT,MAP)](debuggers/allinea-ddt)
### [Total View](debuggers/total-view)
### [Intel VTune Amplifier XE](debuggers/intel-vtune-amplifier)
### [Aislinn](debuggers/aislinn)
### [Allinea Performance Reports](debuggers/allinea-performance-reports)
### [Vampir](debuggers/vampir)
## Numerical Languages
* Interpreted languages for numerical computations
### [Introduction](numerical-languages/introduction)
### [R](numerical-languages/r)
### [Matlab](numerical-languages/matlab)
### [Octave](numerical-languages/octave)
## Chemistry
* Tools for computational chemistry
### [Molpro](chemistry/molpro)
### [Phono3py](chemistry/phono3py)
### [NWChem](chemistry/nwchem)
## Comsol
* A finite element analysis, solver and Simulation software
### [COMSOL](comsol/comsol-multiphysics)
### [Licensing and Available Versions](comsol/licensing-and-available-versions)
## Ansys
* An engineering simulation software
### [Introduction](ansys/ansys)
### [Workbench](ansys/workbench)
### [ANSYS CFX](ansys/ansys-cfx)
### [ANSYS LS-DYNA](ansys/ansys-ls-dyna)
### [ANSYS MAPDL](ansys/ansys-mechanical-apdl)
### [ANSYS Fluent](ansys/ansys-fluent)
### [Setting license preferences](ansys/licensing)
### [Licensing and Available Versions](ansys/setting-license-preferences)
......@@ -29,4 +29,4 @@
{% endif %}
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{% endif %}
\ No newline at end of file
{% endif %}
{% if not nav_item.title.startswith("&nbsp;") %}
{% if nav_item.children %}
<li>
<span class="section">{{ nav_item.title }}</span>
......@@ -29,4 +30,5 @@
{% endif %}
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......@@ -42,7 +42,8 @@ pages:
- Anselm Cluster Storage:
- Cesnet Data Storage: anselm-cluster-documentation/storage/cesnet-data-storage.md
- Storage: anselm-cluster-documentation/storage/storage.md
- Anselm Cluster Software:
- Anselm Cluster Software: anselm-cluster-documentation/software/index.md
- '&nbsp;Anselm Cluster Software':
- Modules: modules-anselm.md
- COMSOL: anselm-cluster-documentation/software/comsol-multiphysics.md
- ParaView: anselm-cluster-documentation/software/paraview.md
......@@ -55,19 +56,19 @@ pages:
- Virtualization: anselm-cluster-documentation/software/kvirtualization.md
- Java: anselm-cluster-documentation/software/java.md
- Operating System: anselm-cluster-documentation/software/operating-system.md
- Anselm Cluster Intel Suite:
- '&nbsp;Anselm Cluster Intel Suite':
- Introduction: anselm-cluster-documentation/software/intel-suite/introduction.md
- Intel MKL: anselm-cluster-documentation/software/intel-suite/intel-mkl.md
- Intel Compilers: anselm-cluster-documentation/software/intel-suite/intel-compilers.md
- Intel IPP: anselm-cluster-documentation/software/intel-suite/intel-integrated-performance-primitives.md
- Intel TBB: anselm-cluster-documentation/software/intel-suite/intel-tbb.md
- Intel Debugger: anselm-cluster-documentation/software/intel-suite/intel-debugger.md
- Anselm Cluster MPI:
- '&nbsp;Anselm Cluster MPI':
- Introduction: anselm-cluster-documentation/software/mpi/mpi.md
- MPI4Py (MPI for Python): anselm-cluster-documentation/software/mpi/mpi4py-mpi-for-python.md
- Running OpenMPI: anselm-cluster-documentation/software/mpi/Running_OpenMPI.md
- Running MPICH2: anselm-cluster-documentation/software/mpi/running-mpich2.md
- Anselm Cluster Numerical Libraries:
- '&nbsp;Anselm Cluster Numerical Libraries':
- Intel numerical libraries: anselm-cluster-documentation/software/numerical-libraries/intel-numerical-libraries.md
- PETSc: anselm-cluster-documentation/software/numerical-libraries/petsc.md
- Trilinos: anselm-cluster-documentation/software/numerical-libraries/trilinos.md
......@@ -75,11 +76,11 @@ pages:
- GSL: anselm-cluster-documentation/software/numerical-libraries/gsl.md
- MAGMA for Intel Xeon Phi: anselm-cluster-documentation/software/numerical-libraries/magma-for-intel-xeon-phi.md
- HDF5: anselm-cluster-documentation/software/numerical-libraries/hdf5.md
- Anselm Cluster Omics Master:
- '&nbsp;Anselm Cluster Omics Master':
- Diagnostic component (TEAM): anselm-cluster-documentation/software/omics-master/diagnostic-component-team.md
- Priorization component (BiERApp): anselm-cluster-documentation/software/omics-master/priorization-component-bierapp.md
- Overview: anselm-cluster-documentation/software/omics-master/overview.md
- Anselm Cluster Debuggers:
- '&nbsp;Anselm Cluster Debuggers':
- Valgrind: anselm-cluster-documentation/software/debuggers/valgrind.md
- PAPI: anselm-cluster-documentation/software/debuggers/papi.md
- Allinea Forge (DDT,MAP): anselm-cluster-documentation/software/debuggers/allinea-ddt.md
......@@ -92,16 +93,16 @@ pages:
- Intel Performance Counter Monitor: anselm-cluster-documentation/software/debuggers/intel-performance-counter-monitor.md
- Allinea Performance Reports: anselm-cluster-documentation/software/debuggers/allinea-performance-reports.md
- Vampir: anselm-cluster-documentation/software/debuggers/vampir.md
- Anselm Cluster Numerical Languages:
- '&nbsp;Anselm Cluster Numerical Languages':
- Introduction: anselm-cluster-documentation/software/numerical-languages/introduction.md
- R: anselm-cluster-documentation/software/numerical-languages/r.md
- Matlab 2013-2014: anselm-cluster-documentation/software/numerical-languages/matlab_1314.md
- Matlab: anselm-cluster-documentation/software/numerical-languages/matlab.md
- Octave: anselm-cluster-documentation/software/numerical-languages/octave.md
- Anselm Cluster Chemistry:
- '&nbsp;Anselm Cluster Chemistry':
- Molpro: anselm-cluster-documentation/software/chemistry/molpro.md
- NWChem: anselm-cluster-documentation/software/chemistry/nwchem.md
- Anselm Cluster Ansys:
- '&nbsp;Anselm Cluster Ansys':
- Introduction: anselm-cluster-documentation/software/ansys/ansys.md
- ANSYS CFX: anselm-cluster-documentation/software/ansys/ansys-cfx.md
- ANSYS LS-DYNA: anselm-cluster-documentation/software/ansys/ansys-ls-dyna.md
......@@ -131,6 +132,56 @@ pages:
- CESNET Data Storage: salomon/storage/cesnet-data-storage.md
- Storage: salomon/storage/storage.md
- Salomon Cluster Software: salomon/software/index.md
- '&nbsp;Salomon Cluster Software':
- Modules: modules-salomon.md
- Compilers: salomon/software/compilers.md
- Intel Xeon Phi: salomon/software/intel-xeon-phi.md
- Java: salomon/software/java.md
- Operating System: salomon/software/operating-system.md
- '&nbsp;Salomon Cluster Intel Suite':
- Introduction: salomon/software/intel-suite/intel-parallel-studio-introduction.md
- Intel MKL: salomon/software/intel-suite/intel-mkl.md
- Intel Compilers: salomon/software/intel-suite/intel-compilers.md
- Intel IPP: salomon/software/intel-suite/intel-integrated-performance-primitives.md
- Intel TBB: salomon/software/intel-suite/intel-tbb.md
- Intel Debugger: salomon/software/intel-suite/intel-debugger.md
- Intel Inspector: salomon/software/intel-suite/intel-inspector.md
- Intel Trace Analyzer and Collector: salomon/software/intel-suite/intel-trace-analyzer-and-collector.md
- Intel Advisor: salomon/software/intel-suite/intel-advisor.md
- '&nbsp;Salomon Cluster MPI':
- Introduction: salomon/software/mpi/mpi.md
- MPI4Py (MPI for Python): salomon/software/mpi/mpi4py-mpi-for-python.md
- Running OpenMPI: salomon/software/mpi/Running_OpenMPI.md
- '&nbsp;Salomon Cluster Debuggers':
- Introduction: salomon/software/debuggers/Introduction.md
- Valgrind: salomon/software/debuggers/valgrind.md
- Allinea Forge (DDT,MAP): salomon/software/debuggers/allinea-ddt.md
- Total View: salomon/software/debuggers/total-view.md
- Intel VTune Amplifier XE: salomon/software/debuggers/intel-vtune-amplifier.md
- Aislinn: salomon/software/debuggers/aislinn.md
- Allinea Performance Reports: salomon/software/debuggers/allinea-performance-reports.md
- Vampir: salomon/software/debuggers/vampir.md
- '&nbsp;Salomon Cluster Numerical Languages':
- Introduction: salomon/software/numerical-languages/introduction.md
- R: salomon/software/numerical-languages/r.md
- Matlab: salomon/software/numerical-languages/matlab.md
- Octave: salomon/software/numerical-languages/octave.md
- '&nbsp;Salomon Cluster Chemistry':
- Molpro: salomon/software/chemistry/molpro.md
- Phono3py: salomon/software/chemistry/phono3py.md
- NWChem: salomon/software/chemistry/nwchem.md
- '&nbsp;Salomon Cluster Comsol':
- COMSOL: salomon/software/comsol/comsol-multiphysics.md
- Licensing and Available Versions: salomon/software/comsol/licensing-and-available-versions.md
- '&nbsp;Salomon Cluster Ansys':
- Introduction: salomon/software/ansys/ansys.md
- Workbench: salomon/software/ansys/workbench.md
- ANSYS CFX: salomon/software/ansys/ansys-cfx.md
- ANSYS LS-DYNA: salomon/software/ansys/ansys-ls-dyna.md
- ANSYS MAPDL: salomon/software/ansys/ansys-mechanical-apdl.md
- ANSYS Fluent: salomon/software/ansys/ansys-fluent.md
- Setting license preferences: salomon/software/ansys/licensing.md
- Licensing and Available Versions: salomon/software/ansys/setting-license-preferences.md
- PBSPro Documentation: pbspro-documentation/pbspro.md
extra:
......
......@@ -148,45 +148,3 @@ anselm-cluster-documentation/remote-visualization.md
anselm-cluster-documentation/compute-nodes.md
get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/vpn-connection-fail-in-win-8.1.md
index.md
salomon/software/ansys/ansys-cfx.md
salomon/software/ansys/ansys-fluent.md
salomon/software/ansys/ansys-ls-dyna.md
salomon/software/ansys/ansys-mechanical-apdl.md
salomon/software/ansys/ansys.md
salomon/software/ansys/licensing.md
salomon/software/ansys/setting-license-preferences.md
salomon/software/ansys/workbench.md
salomon/software/chemistry/molpro.md
salomon/software/chemistry/nwchem.md
salomon/software/chemistry/phono3py.md
salomon/software/compilers.md
salomon/software/comsol/comsol-multiphysics.md
salomon/software/comsol/licensing-and-available-versions.md
salomon/software/debuggers/Introduction.md
salomon/software/debuggers/aislinn.md
salomon/software/debuggers/allinea-ddt.md
salomon/software/debuggers/allinea-performance-reports.md
salomon/software/debuggers/intel-vtune-amplifier.md
salomon/software/debuggers/total-view.md
salomon/software/debuggers/valgrind.md
salomon/software/debuggers/vampir.md
salomon/software/index.md
salomon/software/intel-suite/intel-advisor.md
salomon/software/intel-suite/intel-compilers.md
salomon/software/intel-suite/intel-debugger.md
salomon/software/intel-suite/intel-inspector.md
salomon/software/intel-suite/intel-integrated-performance-primitives.md
salomon/software/intel-suite/intel-mkl.md
salomon/software/intel-suite/intel-parallel-studio-introduction.md
salomon/software/intel-suite/intel-tbb.md
salomon/software/intel-suite/intel-trace-analyzer-and-collector.md
salomon/software/intel-xeon-phi.md
salomon/software/java.md
salomon/software/mpi/Running_OpenMPI.md
salomon/software/mpi/mpi.md
salomon/software/mpi/mpi4py-mpi-for-python.md
salomon/software/numerical-languages/introduction.md
salomon/software/numerical-languages/matlab.md
salomon/software/numerical-languages/octave.md
salomon/software/numerical-languages/r.md
salomon/software/operating-system.md
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