Commit e0dad48d authored by Lukáš Krupčík's avatar Lukáš Krupčík
Browse files

new file: b/Boost/Boost-1.63.0-foss-2015g-Python-3.6.1.eb

	new file:   c/CNTK/CNTK-2.0-Python-3.6.1.eb
	modified:   c/CNTK/CNTK-2.0-foss-2017a-Python-3.6.1.eb
	new file:   c/CNTK/a.out
	modified:   g/glibc/glibc-2.14.eb
	new file:   g/glibc/libc-2.14-6.3.0.eb
	new file:   k/Keras/Keras-2.0.5-CNTK-1.2.0-Python-3.6.1.eb
	new file:   p/Python/.Python-3.6.1-glibc-2.14.eb.swp
	new file:   p/Python/Python-3.6.1-glibc-2.14-6.3.0.eb
	modified:   p/protobuf/protobuf-3.2.0-Python-3.6.1.eb
	new file:   p/protobuf/protobuf-3.3.0-GCC-4.9.3-2.25.eb
	new file:   p/protobuf/protobuf-3.3.0-foss-2017a.eb
parent 832997ea
name = 'Boost'
version = '1.63.0'
versionsuffix = '-Python-%(pyver)s'
homepage = 'http://www.boost.org/'
description = """Boost provides free peer-reviewed portable C++ source libraries."""
toolchain = {'name': 'foss', 'version': '2015g'}
toolchainopts = {'pic': True, 'usempi': True}
source_urls = [SOURCEFORGE_SOURCE]
sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))]
patches = [
'Boost-%(version)s_python3.patch',
]
dependencies = [
('bzip2', '1.0.6', '', True),
('zlib', '1.2.11', '', True),
('Python', '3.6.1', '', True),
]
# also build boost_mpi
boost_mpi = True
moduleclass = 'devel'
# IT4Innovation 2017
easyblock = 'PythonPackage'
name = 'CNTK'
version = '2.0'
versionsuffix = '-Python-%(pyver)s'
homepage = 'http://deeplearning.net/software/theano'
description = """Theano is a Python library that allows you to define, optimize,
and evaluate mathematical expressions involving multi-dimensional arrays efficiently."""
toolchain = {'name': 'GCC', 'version': '6.3.0-2.27'}
source_urls = ['https://cntk.ai/PythonWheel/CPU-Only']
sources = ['cntk-2.0-cp36-cp36m-linux_x86_64.whl']
dependencies = [
('glibc', '2.14', '', True),
('Python', '3.6.1', '', True),
('OpenMPI', '1.10.7')
]
unpack_sources = False
use_pip = True
skipsteps = ['sanitycheck']
sanity_check_paths = {
'files': [''],
'dirs': ['lib/python%(pyshortver)s/site-packages'],
}
moduleclass = 'math'
......@@ -7,7 +7,7 @@ versionsuffix = '-Python-%(pyver)s'
homepage = 'https://cntk.ai/'
description = """The Microsoft Cognitive Toolkit is a unified deep-learning toolkit that describes neural networks as a series of computational steps via a directed graph. In this directed graph, leaf nodes represent input values or network parameters, while other nodes represent matrix operations upon their inputs. CNTK allows to easily realize and combine popular model types such as feed-forward DNNs, convolutional nets (CNNs), and recurrent networks (RNNs/LSTMs). It implements stochastic gradient descent (SGD, error backpropagation) learning with automatic differentiation and parallelization across multiple GPUs and servers. """
toolchain = {'name': 'foss', 'version': '2017a'}
toolchain = {'name': 'foss', 'version': '2015g'}
patches = [
'glibc.patch',
......@@ -21,28 +21,28 @@ dependencies = [
('Python', '3.6.1', '', True),
('libzip', '1.2.0', '', True),
('zlib', '1.2.11', '', True),
('protobuf', '3.2.0', versionsuffix, True),
('protobuf', '3.3.0', '', ('GCC', '4.9.3-2.25')),
('CNTKCustomMKL','3.0', '', True),
('Boost', '1.63.0', versionsuffix, ('foss', '2017a')),
('Boost', '1.63.0', versionsuffix),
('SWIG', '3.0.12', versionsuffix, True),
# ('OpenMPI', '1.8.6', '', ('GCC', '4.4.7-system')),
('OpenMPI', '1.8.6', '', ('GCC', '4.4.7-system')),
]
prefix_opt = '--with-build-top='
preconfigopts = 'sed -i "s/cntk_custom_mkl_version=3/cntk_custom_mkl_version=3.0/" configure && '
preconfigopts += 'sed -i "s/-Werror//" Makefile && '
#preconfigopts += 'sed -i "s/#include <limits>/#include <limits>\\n#include <stdlib.h>/" Source/Math/BlockMultiplierPlatform.h &&'
preconfigopts += 'sed -i "s/-rdynamic/-rdynamic -ldl/" Makefile && '
prebuildopts = 'cd %(installdir)s &&'
configopts = '--with-py-versions=36 --with-buildtype=release --mpi=yes --python=yes --asgd=no '
configopts += '--with-boost=$EBROOTBOOST --with-protobuf=$EBROOTPROTOBUF --with-swig=$EBROOTSWIG --with-libzip=$EBROOTLIBZIP '
configopts += '--with-mpi=$EBROOTOPENMPI --with-py36-path=$EBROOTPYTHON --with-mkl=/apps/all/CNTKCustomMKL/ '
configopts += '--with-mpi=$EBROOTOPENMPI --with-py36-path=$EBROOTPYTHON --with-mkl=/apps/all/CNTKCustomMKL '
sanity_check_paths = {
'files': [],
'dirs': ['lib'],
'dirs': ['lib', 'bin', 'python'],
}
moduleclass = 'math'
moduleclass = 'lib'
......@@ -3,9 +3,8 @@ easyblock = 'ConfigureMake'
name = 'glibc'
version = '2.14'
homepage = 'http://git-scm.com/'
description = """Git is a free and open source distributed version control system designed
to handle everything from small to very large projects with speed and efficiency."""
homepage = 'https://www.gnu.org/software/libc/'
description = """The Glibc package contains the main C library. This library provides the basic routines for allocating memory, searching directories, opening and closing files, reading and writing files, string handling, pattern matching, arithmetic, and so on."""
toolchain = {'name': 'dummy', 'version': ''}
......@@ -15,7 +14,7 @@ source_urls = ['http://ftp.gnu.org/gnu/glibc/']
preconfigopts = 'mkdir build && '
preconfigopts += 'cd build && '
configure_cmd_prefix = '.'
configopts = '--enable-kernel=2.6.32'
configopts = '--enable-kernel=2.6.32 --enable-obsolete-rpc --enable-stack-protector=strong'
prebuildopts = 'cd build && '
preinstallopts= 'cd build && '
......
easyblock = 'Toolchain'
name = 'libc'
version = '2.14-6.3.0'
homepage = 'https://www.gnu.org/software/libc/'
description = """The Glibc package contains the main C library. This library provides the basic routines for allocating memory, searching directories, opening and closing files, reading and writing files, string handling, pattern matching, arithmetic, and so on."""
toolchain = {'name': 'dummy', 'version': ''}
dependencies = [
('GCCcore', '6.3.0'),
('glibc', '2.14')
]
moduleclass = 'toolchain'
easyblock = 'PythonPackage'
name = 'Keras'
version = '2.0.5'
versionsuffix = '-CNTK-1.2.0-Python-%(pyver)s'
homepage = 'https://keras.io/'
description = """Keras is a minimalist, highly modular neural networks library, written in Python and
capable of running on top of either TensorFlow or Theano."""
toolchain = {'name': 'foss', 'version': '2017a'}
source_urls = [PYPI_SOURCE]
sources = [SOURCE_TAR_GZ]
use_pip = True
dependencies = [
('Python', '3.6.1', '', True),
('CNTK', '2.0', '-Python-%(pyver)s'),
# ('h5py', '2.7.0', '%(versionsuffix)s'), internal Python 3.6.1
# ('PyYAML', '3.12', versionsuffix), internal Python 3.6.1
]
# it defaults to Tensorflow
modextravars = {'KERAS_BACKEND': 'cntk'}
sanity_check_paths = {
'files': [],
'dirs': ['lib/python%(pyshortver)s/site-packages'],
}
moduleclass = 'math'
# IT4Innovation 2017
name = 'Python'
version = '3.6.1'
homepage = 'http://python.org/'
description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively."
toolchain = {'name': 'libc', 'version': '2.14'}
toolchainopts = {'pic': True, 'opt': True, 'optarch': True}
source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/']
sources = [SOURCE_TGZ]
# python needs bzip2 to build the bz2 package
dependencies = [
('bzip2', '1.0.6'),
('libreadline', '7.0'),
('SQLite', '3.17.0'),
('Tk', '8.6.6'),
('GMP', '6.1.2'),
('XZ', '5.2.3'),
('zlib', '1.2.11'),
('ncurses', '6.0'),
# ('OpenSSL', '1.0.1q'), # OS dependency should be preferred if the os version is more recent then this version, it's
# nice to have an up to date openssl for security reasons
]
osdependencies = [('openssl-devel', 'libssl-dev')]
# order is important!
# package versions updated Feb 25th 2016
exts_list = [
('setuptools', '20.1.1', {
'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'],
}),
('pip', '8.0.2', {
'source_urls': ['https://pypi.python.org/packages/source/p/pip/'],
}),
('nose', '1.3.7', {
'source_urls': ['https://pypi.python.org/packages/source/n/nose/'],
}),
]
#modluafooter = 'add_property("state","experimental")'
moduleclass = 'lang'
......@@ -8,6 +8,7 @@ homepage = 'https://code.google.com/p/protobuf/'
description = """Google Protocol Buffers"""
toolchain = {'name': 'dummy', 'version': ''}
toolchainopts = {'pic': True}
sources = ['%(name)s-python-%(version)s.tar.gz']
source_urls = ['https://github.com/google/protobuf/releases/download/v%(version)s/']
......
easyblock = 'ConfigureMake'
name = 'protobuf'
version = '3.3.0'
homepage = 'https://github.com/google/protobuf/'
description = """Google Protocol Buffers"""
toolchain = {'name': 'GCC', 'version': '4.9.3-2.25'}
toolchainopts = {'pic': True}
source_urls = ['https://github.com/google/protobuf/archive/v%(version)s/']
sources = [SOURCE_TAR_GZ]
builddependencies = [('Autotools', '20150215', '', True)]
preconfigopts = "./autogen.sh && "
sanity_check_paths = {
'files': ['bin/protoc', 'lib/libprotobuf.%s' % SHLIB_EXT],
'dirs': [],
}
moduleclass = 'devel'
easyblock = 'ConfigureMake'
name = 'protobuf'
version = '3.3.0'
homepage = 'https://github.com/google/protobuf/'
description = """Google Protocol Buffers"""
toolchain = {'name': 'foss', 'version': '2017a'}
toolchainopts = {'pic': True}
source_urls = ['https://github.com/google/protobuf/archive/v%(version)s/']
sources = [SOURCE_TAR_GZ]
builddependencies = [('Autotools', '20150215', '', True)]
preconfigopts = "./autogen.sh && "
sanity_check_paths = {
'files': ['bin/protoc', 'lib/libprotobuf.%s' % SHLIB_EXT],
'dirs': [],
}
moduleclass = 'devel'
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