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BioinformaticDataCompression
BigDataViewer_Core_Extension
Commits
2c50d8e8
Commit
2c50d8e8
authored
5 years ago
by
Vojtech Moravec
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Cleaned main function.
parent
18e7fc18
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.gitignore
+2
-0
2 additions, 0 deletions
.gitignore
src/main/java/bdv/BigDataViewer.java
+10
-26
10 additions, 26 deletions
src/main/java/bdv/BigDataViewer.java
with
12 additions
and
26 deletions
.gitignore
+
2
−
0
View file @
2c50d8e8
...
@@ -12,3 +12,5 @@
...
@@ -12,3 +12,5 @@
# IntelliJ
# IntelliJ
.idea/
.idea/
*.iml
*.iml
src/main/resources/META-INF/MANIFEST.MF
classes/
\ No newline at end of file
This diff is collapsed.
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src/main/java/bdv/BigDataViewer.java
+
10
−
26
View file @
2c50d8e8
...
@@ -458,6 +458,7 @@ public class BigDataViewer
...
@@ -458,6 +458,7 @@ public class BigDataViewer
viewerFrame
.
setJMenuBar
(
menubar
);
viewerFrame
.
setJMenuBar
(
menubar
);
}
}
// NOTE(Moravec): Entry point of BigDataViewer.
public
static
BigDataViewer
open
(
final
AbstractSpimData
<
?
>
spimData
,
final
String
windowTitle
,
final
ProgressWriter
progressWriter
,
final
ViewerOptions
options
)
public
static
BigDataViewer
open
(
final
AbstractSpimData
<
?
>
spimData
,
final
String
windowTitle
,
final
ProgressWriter
progressWriter
,
final
ViewerOptions
options
)
{
{
if
(
WrapBasicImgLoader
.
wrapImgLoaderIfNecessary
(
spimData
)
)
if
(
WrapBasicImgLoader
.
wrapImgLoaderIfNecessary
(
spimData
)
)
...
@@ -681,32 +682,15 @@ public class BigDataViewer
...
@@ -681,32 +682,15 @@ public class BigDataViewer
public
static
void
main
(
final
String
[]
args
)
public
static
void
main
(
final
String
[]
args
)
{
{
// final String fn = "http://tomancak-mac-17.mpi-cbg.de:8080/openspim/";
if
(
args
.
length
<
1
)
// final String fn = "/Users/Pietzsch/Desktop/openspim/datasetHDF.xml";
{
// final String fn = "/Users/pietzsch/workspace/data/111010_weber_full.xml";
System
.
err
.
println
(
"Error: pass XML dataset file."
);
// final String fn = "/Users/Pietzsch/Desktop/spimrec2/dataset.xml";
return
;
// final String fn = "/Users/pietzsch/Desktop/HisYFP-SPIM/dataset.xml";
}
// final String fn = "/Users/Pietzsch/Desktop/bdv example/drosophila 2.xml";
// final String fn = "/Users/pietzsch/Desktop/data/clusterValia/140219-1/valia-140219-1.xml";
final
String
fn
=
args
[
0
];
// final String fn = "/Users/Pietzsch/Desktop/data/catmaid.xml";
System
.
out
.
println
(
"Loading dataset from: "
+
fn
);
// final String fn = "src/main/resources/openconnectome-bock11-neariso.xml";
//TODO(Moravec): Handle loading from server.
// final String fn = "/home/saalfeld/catmaid.xml";
// final String fn = "/home/saalfeld/catmaid-fafb00-v9.xml";
// final String fn = "/home/saalfeld/catmaid-fafb00-sample_A_cutout_3k.xml";
// final String fn = "/home/saalfeld/catmaid-thorsten.xml";
// final String fn = "/home/saalfeld/knossos-example.xml";
// final String fn = "/Users/Pietzsch/Desktop/data/catmaid-confocal.xml";
// final String fn = "/Users/pietzsch/desktop/data/BDV130418A325/BDV130418A325_NoTempReg.xml";
// final String fn = "/Users/pietzsch/Desktop/data/valia2/valia.xml";
// final String fn = "/Users/pietzsch/workspace/data/fast fly/111010_weber/combined.xml";
// final String fn = "/Users/pietzsch/workspace/data/mette/mette.xml";
// final String fn = "/Users/tobias/Desktop/openspim.xml";
// final String fn = "/Users/pietzsch/Desktop/data/fibsem.xml";
// final String fn = "/Users/pietzsch/Desktop/data/fibsem-remote.xml";
// final String fn = "/Users/pietzsch/Desktop/url-valia.xml";
// final String fn = "/Users/pietzsch/Desktop/data/clusterValia/140219-1/valia-140219-1.xml";
final
String
fn
=
"/Users/pietzsch/workspace/data/111010_weber_full.xml"
;
// final String fn = "/Volumes/projects/tomancak_lightsheet/Mette/ZeissZ1SPIM/Maritigrella/021013_McH2BsGFP_CAAX-mCherry/11-use/hdf5/021013_McH2BsGFP_CAAX-mCherry-11-use.xml";
try
try
{
{
System
.
setProperty
(
"apple.laf.useScreenMenuBar"
,
"true"
);
System
.
setProperty
(
"apple.laf.useScreenMenuBar"
,
"true"
);
...
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