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Commit 59f3c804 authored by Vojtech Moravec's avatar Vojtech Moravec
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Link QcmpCompression through maven dependency. 

QcmpCompression is now maven module available on it4i's GitLab.
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pom.xml
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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>org.scijava</groupId>
<artifactId>pom-scijava</artifactId>
<version>29.2.1</version>
<relativePath />
</parent>
<parent>
<groupId>org.scijava</groupId>
<artifactId>pom-scijava</artifactId>
<version>29.2.1</version>
<relativePath/>
</parent>
<groupId>sc.fiji</groupId>
<artifactId>bigdataviewer-core</artifactId>
<version>10.0.3-SNAPSHOT</version>
<groupId>sc.fiji</groupId>
<artifactId>bigdataviewer-core</artifactId>
<version>10.0.3-SNAPSHOT</version>
<name>BigDataViewer Core</name>
<description>BigDataViewer core classes with minimal dependencies.</description>
<url>https://github.com/bigdataviewer/bigdataviewer-core</url>
<inceptionYear>2012</inceptionYear>
<organization>
<name>BigDataViewer</name>
<url>https://imagej.net/BigDataViewer</url>
</organization>
<licenses>
<license>
<name>Simplified BSD License</name>
<url>https://opensource.org/licenses/BSD-2-Clause</url>
<distribution>repo</distribution>
</license>
</licenses>
<name>BigDataViewer Core</name>
<description>BigDataViewer core classes with minimal dependencies.</description>
<url>https://github.com/bigdataviewer/bigdataviewer-core</url>
<inceptionYear>2012</inceptionYear>
<organization>
<name>BigDataViewer</name>
<url>https://imagej.net/BigDataViewer</url>
</organization>
<licenses>
<license>
<name>Simplified BSD License</name>
<url>https://opensource.org/licenses/BSD-2-Clause</url>
<distribution>repo</distribution>
</license>
</licenses>
<developers>
<developer>
<id>tpietzsch</id>
<name>Tobias Pietzsch</name>
<url>https://imagej.net/User:Pietzsch</url>
<roles>
<role>founder</role>
<role>lead</role>
<role>developer</role>
<role>debugger</role>
<role>reviewer</role>
<role>support</role>
<role>maintainer</role>
</roles>
</developer>
<developer>
<id>ctrueden</id>
<name>Curtis Rueden</name>
<url>https://imagej.net/User:Rueden</url>
<roles>
<role>maintainer</role>
</roles>
</developer>
</developers>
<contributors>
<contributor>
<name>John Bogovic</name>
<url>https://imagej.net/User:Bogovic</url>
<properties><id>bogovicj</id></properties>
</contributor>
<contributor>
<name>HongKee Moon</name>
<url>https://imagej.net/User:Moon</url>
<properties><id>hkmoon</id></properties>
</contributor>
<contributor>
<name>Stephan Preibisch</name>
<url>https://imagej.net/User:StephanP</url>
<properties><id>StephanPreibisch</id></properties>
</contributor>
<contributor>
<name>Stephan Saalfeld</name>
<url>https://imagej.net/User:Saalfeld</url>
<properties><id>axtimwalde</id></properties>
</contributor>
<contributor>
<name>Johannes Schindelin</name>
<url>https://imagej.net/User:Schindelin</url>
<properties><id>dscho</id></properties>
</contributor>
<contributor>
<name>Jean-Yves Tinevez</name>
<url>https://imagej.net/User:JeanYvesTinevez</url>
<properties><id>tinevez</id></properties>
</contributor>
<contributor>
<name>Igor Pisarev</name>
<properties><id>igorpisarev</id></properties>
</contributor>
<contributor>
<name>Neil Thistlethwaite</name>
<properties><id>nthistle</id></properties>
</contributor>
<contributor>
<name>Philipp Hanslovsky</name>
<url>https://imagej.net/User:Hanslovsky</url>
<properties><id>hanslovsky</id></properties>
</contributor>
<contributor>
<name>Tim-Oliver Buchholz</name>
<url>https://imagej.net/User:Tibuch</url>
<properties><id>tibuch</id></properties>
</contributor>
<contributor>
<name>Christian Tischer</name>
<properties><id>tischi</id></properties>
</contributor>
</contributors>
<developers>
<developer>
<id>tpietzsch</id>
<name>Tobias Pietzsch</name>
<url>https://imagej.net/User:Pietzsch</url>
<roles>
<role>founder</role>
<role>lead</role>
<role>developer</role>
<role>debugger</role>
<role>reviewer</role>
<role>support</role>
<role>maintainer</role>
</roles>
</developer>
<developer>
<id>ctrueden</id>
<name>Curtis Rueden</name>
<url>https://imagej.net/User:Rueden</url>
<roles>
<role>maintainer</role>
</roles>
</developer>
</developers>
<contributors>
<contributor>
<name>John Bogovic</name>
<url>https://imagej.net/User:Bogovic</url>
<properties>
<id>bogovicj</id>
</properties>
</contributor>
<contributor>
<name>HongKee Moon</name>
<url>https://imagej.net/User:Moon</url>
<properties>
<id>hkmoon</id>
</properties>
</contributor>
<contributor>
<name>Stephan Preibisch</name>
<url>https://imagej.net/User:StephanP</url>
<properties>
<id>StephanPreibisch</id>
</properties>
</contributor>
<contributor>
<name>Stephan Saalfeld</name>
<url>https://imagej.net/User:Saalfeld</url>
<properties>
<id>axtimwalde</id>
</properties>
</contributor>
<contributor>
<name>Johannes Schindelin</name>
<url>https://imagej.net/User:Schindelin</url>
<properties>
<id>dscho</id>
</properties>
</contributor>
<contributor>
<name>Jean-Yves Tinevez</name>
<url>https://imagej.net/User:JeanYvesTinevez</url>
<properties>
<id>tinevez</id>
</properties>
</contributor>
<contributor>
<name>Igor Pisarev</name>
<properties>
<id>igorpisarev</id>
</properties>
</contributor>
<contributor>
<name>Neil Thistlethwaite</name>
<properties>
<id>nthistle</id>
</properties>
</contributor>
<contributor>
<name>Philipp Hanslovsky</name>
<url>https://imagej.net/User:Hanslovsky</url>
<properties>
<id>hanslovsky</id>
</properties>
</contributor>
<contributor>
<name>Tim-Oliver Buchholz</name>
<url>https://imagej.net/User:Tibuch</url>
<properties>
<id>tibuch</id>
</properties>
</contributor>
<contributor>
<name>Christian Tischer</name>
<properties>
<id>tischi</id>
</properties>
</contributor>
</contributors>
<mailingLists>
<mailingList>
<name>Image.sc Forum</name>
<archive>https://forum.image.sc/tags/bigdataviewer</archive>
</mailingList>
</mailingLists>
<mailingLists>
<mailingList>
<name>Image.sc Forum</name>
<archive>https://forum.image.sc/tags/bigdataviewer</archive>
</mailingList>
</mailingLists>
<scm>
<connection>scm:git:git://github.com/bigdataviewer/bigdataviewer-core</connection>
<developerConnection>scm:git:git@github.com:bigdataviewer/bigdataviewer-core</developerConnection>
<tag>HEAD</tag>
<url>https://github.com/bigdataviewer/bigdataviewer-core</url>
</scm>
<issueManagement>
<system>GitHub Issues</system>
<url>https://github.com/bigdataviewer/bigdataviewer-core/issues</url>
</issueManagement>
<ciManagement>
<system>Travis CI</system>
<url>https://travis-ci.org/bigdataviewer/bigdataviewer-core</url>
</ciManagement>
<scm>
<connection>scm:git:git://github.com/bigdataviewer/bigdataviewer-core</connection>
<developerConnection>scm:git:git@github.com:bigdataviewer/bigdataviewer-core</developerConnection>
<tag>HEAD</tag>
<url>https://github.com/bigdataviewer/bigdataviewer-core</url>
</scm>
<issueManagement>
<system>GitHub Issues</system>
<url>https://github.com/bigdataviewer/bigdataviewer-core/issues</url>
</issueManagement>
<ciManagement>
<system>Travis CI</system>
<url>https://travis-ci.org/bigdataviewer/bigdataviewer-core</url>
</ciManagement>
<properties>
<package-name>bdv</package-name>
<license.licenseName>bsd_2</license.licenseName>
<license.copyrightOwners>BigDataViewer developers.</license.copyrightOwners>
<properties>
<package-name>bdv</package-name>
<license.licenseName>bsd_2</license.licenseName>
<license.copyrightOwners>BigDataViewer developers.</license.copyrightOwners>
<!-- NB: Deploy releases to the SciJava Maven repository. -->
<releaseProfiles>deploy-to-scijava</releaseProfiles>
</properties>
<!-- NB: Deploy releases to the SciJava Maven repository. -->
<releaseProfiles>deploy-to-scijava</releaseProfiles>
</properties>
<repositories>
<repository>
<id>scijava.public</id>
<url>https://maven.scijava.org/content/groups/public</url>
</repository>
</repositories>
<repositories>
<repository>
<id>scijava.public</id>
<url>https://maven.scijava.org/content/groups/public</url>
</repository>
<repository>
<id>cz.it4i</id>
<url>https://code.it4i.cz/api/v4/projects/932/packages/maven</url>
</repository>
</repositories>
<dependencies>
<dependency>
<groupId>net.imglib2</groupId>
<artifactId>imglib2</artifactId>
</dependency>
<dependency>
<groupId>net.imglib2</groupId>
<artifactId>imglib2-realtransform</artifactId>
</dependency>
<dependency>
<groupId>net.imglib2</groupId>
<artifactId>imglib2-cache</artifactId>
</dependency>
<dependency>
<groupId>net.imglib2</groupId>
<artifactId>imglib2-algorithm</artifactId>
</dependency>
<dependency>
<groupId>sc.fiji</groupId>
<artifactId>spim_data</artifactId>
</dependency>
<dependency>
<groupId>cisd</groupId>
<artifactId>jhdf5</artifactId>
</dependency>
<dependency>
<groupId>org.jdom</groupId>
<artifactId>jdom2</artifactId>
</dependency>
<dependency>
<groupId>com.google.code.gson</groupId>
<artifactId>gson</artifactId>
</dependency>
<dependency>
<groupId>org.scijava</groupId>
<artifactId>ui-behaviour</artifactId>
</dependency>
<dependency>
<groupId>org.scijava</groupId>
<artifactId>scijava-listeners</artifactId>
</dependency>
<dependency>
<groupId>org.janelia.saalfeldlab</groupId>
<artifactId>n5-imglib2</artifactId>
</dependency>
<dependency>
<groupId>org.janelia.saalfeldlab</groupId>
<artifactId>n5</artifactId>
</dependency>
<dependency>
<groupId>com.miglayout</groupId>
<artifactId>miglayout-swing</artifactId>
</dependency>
<dependencies>
<dependency>
<groupId>net.imglib2</groupId>
<artifactId>imglib2</artifactId>
</dependency>
<dependency>
<groupId>net.imglib2</groupId>
<artifactId>imglib2-realtransform</artifactId>
</dependency>
<dependency>
<groupId>net.imglib2</groupId>
<artifactId>imglib2-cache</artifactId>
</dependency>
<dependency>
<groupId>net.imglib2</groupId>
<artifactId>imglib2-algorithm</artifactId>
</dependency>
<dependency>
<groupId>sc.fiji</groupId>
<artifactId>spim_data</artifactId>
</dependency>
<dependency>
<groupId>cisd</groupId>
<artifactId>jhdf5</artifactId>
</dependency>
<dependency>
<groupId>org.jdom</groupId>
<artifactId>jdom2</artifactId>
</dependency>
<dependency>
<groupId>com.google.code.gson</groupId>
<artifactId>gson</artifactId>
</dependency>
<dependency>
<groupId>org.scijava</groupId>
<artifactId>ui-behaviour</artifactId>
</dependency>
<dependency>
<groupId>org.scijava</groupId>
<artifactId>scijava-listeners</artifactId>
</dependency>
<dependency>
<groupId>org.janelia.saalfeldlab</groupId>
<artifactId>n5-imglib2</artifactId>
</dependency>
<dependency>
<groupId>org.janelia.saalfeldlab</groupId>
<artifactId>n5</artifactId>
</dependency>
<dependency>
<groupId>com.miglayout</groupId>
<artifactId>miglayout-swing</artifactId>
</dependency>
<!-- test dependencies -->
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<scope>test</scope>
</dependency>
<!-- test dependencies -->
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.azgra</groupId>
<artifactId>DataCompressor</artifactId>
<version>1.0-SNAPSHOT</version>
<scope>compile</scope>
<groupId>cz.it4i</groupId>
<artifactId>QcmpCompression</artifactId>
<version>0.5-SNAPSHOT</version>
</dependency>
</dependencies>
</project>
src/main/java/bdv/BigDataViewer.java
+ 1
− 1
View file @ 59f3c804
......@@ -28,7 +28,6 @@
*/
package bdv;
import azgracompress.utilities.ColorConsole;
import bdv.cache.CacheControl;
import bdv.export.ProgressWriter;
import bdv.export.ProgressWriterConsole;
......@@ -44,6 +43,7 @@ import bdv.tools.transformation.ManualTransformation;
import bdv.tools.transformation.ManualTransformationEditor;
import bdv.tools.transformation.TransformedSource;
import bdv.viewer.*;
import cz.it4i.qcmp.utilities.ColorConsole;
import mpicbg.spim.data.SpimDataException;
import mpicbg.spim.data.generic.AbstractSpimData;
import mpicbg.spim.data.generic.sequence.AbstractSequenceDescription;
......
src/main/java/bdv/img/remote/RemoteImageLoader.java
+ 4
− 4
View file @ 59f3c804
......@@ -28,10 +28,6 @@
*/
package bdv.img.remote;
import azgracompress.cache.ICacheFile;
import azgracompress.cache.QuantizationCacheManager;
import azgracompress.compression.ImageDecompressor;
import azgracompress.utilities.ColorConsole;
import bdv.AbstractViewerSetupImgLoader;
import bdv.ViewerImgLoader;
import bdv.img.cache.VolatileCachedCellImg;
......@@ -42,6 +38,10 @@ import bdv.img.hdf5.ViewLevelId;
import bdv.util.ConstantRandomAccessible;
import bdv.viewer.ViewerOptions;
import com.google.gson.GsonBuilder;
import cz.it4i.qcmp.cache.ICacheFile;
import cz.it4i.qcmp.cache.QuantizationCacheManager;
import cz.it4i.qcmp.compression.ImageDecompressor;
import cz.it4i.qcmp.utilities.ColorConsole;
import mpicbg.spim.data.generic.sequence.ImgLoaderHint;
import net.imglib2.FinalInterval;
import net.imglib2.RandomAccessibleInterval;
......
src/main/java/bdv/img/remote/RemoteVolatileShortArrayLoader.java
+ 3
− 3
View file @ 59f3c804
......@@ -28,10 +28,10 @@
*/
package bdv.img.remote;
import azgracompress.compression.CompressorDecompressorBase;
import azgracompress.compression.ImageDecompressor;
import azgracompress.utilities.ColorConsole;
import bdv.img.cache.CacheArrayLoader;
import cz.it4i.qcmp.compression.CompressorDecompressorBase;
import cz.it4i.qcmp.compression.ImageDecompressor;
import cz.it4i.qcmp.utilities.ColorConsole;
import net.imglib2.img.basictypeaccess.volatiles.array.VolatileShortArray;
import java.io.IOException;
......
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