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BioinformaticDataCompression
BigDataViewer_Fiji_Plugin
Commits
12d85bd0
Commit
12d85bd0
authored
Mar 09, 2016
by
Tobias Pietzsch
Browse files
use BigDataViewer.open() instead of deprecated constructor
parent
f160710d
Changes
1
Hide whitespace changes
Inline
Side-by-side
src/main/java/bdv/ij/OpenImagePlusPlugIn.java
View file @
12d85bd0
package
bdv.ij
;
import
java.io.File
;
import
java.util.ArrayList
;
import
java.util.HashMap
;
import
bdv.BigDataViewer
;
import
bdv.ij.util.ProgressWriterIJ
;
import
bdv.img.imagestack.ImageStackImageLoader
;
import
bdv.img.virtualstack.VirtualStackImageLoader
;
import
bdv.spimdata.SequenceDescriptionMinimal
;
import
bdv.spimdata.SpimDataMinimal
;
import
bdv.spimdata.WrapBasicImgLoader
;
import
bdv.tools.brightness.ConverterSetup
;
import
bdv.tools.brightness.SetupAssignments
;
import
bdv.viewer.DisplayMode
;
import
bdv.viewer.ViewerOptions
;
import
bdv.viewer.VisibilityAndGrouping
;
import
ij.CompositeImage
;
import
ij.IJ
;
import
ij.ImageJ
;
...
...
@@ -7,11 +23,6 @@ import ij.ImagePlus;
import
ij.WindowManager
;
import
ij.plugin.PlugIn
;
import
ij.process.LUT
;
import
java.io.File
;
import
java.util.ArrayList
;
import
java.util.HashMap
;
import
mpicbg.spim.data.generic.sequence.BasicImgLoader
;
import
mpicbg.spim.data.generic.sequence.BasicViewSetup
;
import
mpicbg.spim.data.registration.ViewRegistration
;
...
...
@@ -23,17 +34,6 @@ import mpicbg.spim.data.sequence.TimePoints;
import
net.imglib2.FinalDimensions
;
import
net.imglib2.realtransform.AffineTransform3D
;
import
net.imglib2.type.numeric.ARGBType
;
import
bdv.BigDataViewer
;
import
bdv.ij.util.ProgressWriterIJ
;
import
bdv.img.imagestack.ImageStackImageLoader
;
import
bdv.img.virtualstack.VirtualStackImageLoader
;
import
bdv.spimdata.SequenceDescriptionMinimal
;
import
bdv.spimdata.SpimDataMinimal
;
import
bdv.spimdata.WrapBasicImgLoader
;
import
bdv.tools.brightness.ConverterSetup
;
import
bdv.tools.brightness.SetupAssignments
;
import
bdv.viewer.DisplayMode
;
import
bdv.viewer.VisibilityAndGrouping
;
/**
* ImageJ plugin to show the current image in BigDataViewer.
...
...
@@ -174,7 +174,7 @@ public class OpenImagePlusPlugIn implements PlugIn
final
SpimDataMinimal
spimData
=
new
SpimDataMinimal
(
basePath
,
seq
,
new
ViewRegistrations
(
registrations
)
);
WrapBasicImgLoader
.
wrapImgLoaderIfNecessary
(
spimData
);
final
BigDataViewer
bdv
=
new
BigDataViewer
(
spimData
,
"BigDataViewer"
,
new
ProgressWriterIJ
()
);
final
BigDataViewer
bdv
=
BigDataViewer
.
open
(
spimData
,
"BigDataViewer"
,
new
ProgressWriterIJ
()
,
ViewerOptions
.
options
()
);
final
SetupAssignments
sa
=
bdv
.
getSetupAssignments
();
final
VisibilityAndGrouping
vg
=
bdv
.
getViewer
().
getVisibilityAndGrouping
();
if
(
imp
.
isComposite
()
)
...
...
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