Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
B
BigDataViewer_Server_Extension
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Wiki
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Build
Pipelines
Jobs
Pipeline schedules
Artifacts
Deploy
Releases
Package registry
Container registry
Model registry
Operate
Environments
Terraform modules
Monitor
Incidents
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
BioinformaticDataCompression
BigDataViewer_Server_Extension
Commits
daa2d668
Commit
daa2d668
authored
10 years ago
by
Tobias Pietzsch
Browse files
Options
Downloads
Patches
Plain Diff
read and cache settings.xml file in the CellHandler constructor
parent
fc01497b
No related branches found
No related tags found
No related merge requests found
Changes
1
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
src/main/java/bdv/server/CellHandler.java
+47
-50
47 additions, 50 deletions
src/main/java/bdv/server/CellHandler.java
with
47 additions
and
50 deletions
src/main/java/bdv/server/CellHandler.java
+
47
−
50
View file @
daa2d668
...
...
@@ -22,6 +22,7 @@ import net.imglib2.realtransform.AffineTransform3D;
import
org.eclipse.jetty.server.Request
;
import
org.eclipse.jetty.server.handler.ContextHandler
;
import
org.eclipse.jetty.util.log.Log
;
import
org.jdom2.Document
;
import
org.jdom2.JDOMException
;
import
org.jdom2.input.SAXBuilder
;
...
...
@@ -38,6 +39,8 @@ import java.io.*;
public
class
CellHandler
extends
ContextHandler
{
private
static
final
org
.
eclipse
.
jetty
.
util
.
log
.
Logger
LOG
=
Log
.
getLogger
(
CellHandler
.
class
);
private
final
VolatileGlobalCellCache
<
VolatileShortArray
>
cache
;
private
final
CacheHints
cacheHints
;
...
...
@@ -67,10 +70,11 @@ public class CellHandler extends ContextHandler
*/
private
final
String
metadataJson
;
// Cached XML string for provideXML()
private
boolean
remoteSettingsChecked
=
false
;
private
String
remoteSettingsString
=
null
;
/**
* Cached dataset.settings XML to be send to clients. May be null if no
* settings file exists for the dataset.
*/
private
final
String
settingsXmlString
;
public
CellHandler
(
final
String
baseUrl
,
final
String
xmlFilename
)
throws
SpimDataException
,
IOException
{
...
...
@@ -82,14 +86,15 @@ public class CellHandler extends ContextHandler
cache
=
imgLoader
.
getCache
();
cacheHints
=
new
CacheHints
(
LoadingStrategy
.
BLOCKING
,
0
,
false
);
datasetXmlString
=
buildRemoteDatasetXML
(
io
,
spimData
,
baseUrl
);
metadataJson
=
buildMetadataJsonString
(
imgLoader
,
seq
);
// dataSetURL property is used for providing the XML file by replace
// SequenceDescription>ImageLoader>baseUrl
this
.
xmlFilename
=
xmlFilename
;
baseFilename
=
xmlFilename
.
endsWith
(
".xml"
)
?
xmlFilename
.
substring
(
0
,
xmlFilename
.
length
()
-
".xml"
.
length
()
)
:
xmlFilename
;
dataSetURL
=
baseUrl
;
datasetXmlString
=
buildRemoteDatasetXML
(
io
,
spimData
,
baseUrl
);
metadataJson
=
buildMetadataJsonString
(
imgLoader
,
seq
);
settingsXmlString
=
buildSettingsXML
(
baseFilename
);
}
@Override
...
...
@@ -176,40 +181,10 @@ public class CellHandler extends ContextHandler
ow
.
close
();
}
public
void
provideSettings
(
final
Request
baseRequest
,
final
HttpServletResponse
response
)
public
void
provideSettings
(
final
Request
baseRequest
,
final
HttpServletResponse
response
)
throws
IOException
{
// Just check it once
if
(
!
remoteSettingsChecked
)
{
remoteSettingsChecked
=
true
;
try
{
final
SAXBuilder
sax
=
new
SAXBuilder
();
final
String
settings
=
baseFilename
+
".settings"
+
".xml"
;
final
Document
doc
=
sax
.
build
(
settings
);
final
XMLOutputter
xout
=
new
XMLOutputter
(
Format
.
getPrettyFormat
()
);
final
StringWriter
sw
=
new
StringWriter
();
xout
.
output
(
doc
,
sw
);
remoteSettingsString
=
sw
.
toString
();
}
catch
(
final
JDOMException
e
)
{
return
;
}
catch
(
final
IOException
e
)
{
return
;
}
}
// If the setting is loaded, the context is stored in
// remoteSettingsString
// Otherwise, it leaves as null.
if
(
remoteSettingsString
==
null
)
if
(
settingsXmlString
==
null
)
// there is no settings.xml for the dataset
return
;
response
.
setContentType
(
"application/xml"
);
...
...
@@ -217,16 +192,9 @@ public class CellHandler extends ContextHandler
response
.
setStatus
(
HttpServletResponse
.
SC_OK
);
baseRequest
.
setHandled
(
true
);
try
{
final
PrintWriter
ow
=
response
.
getWriter
();
ow
.
write
(
remoteSettingsString
);
ow
.
close
();
}
catch
(
final
IOException
e
)
{
return
;
}
final
PrintWriter
ow
=
response
.
getWriter
();
ow
.
write
(
settingsXmlString
);
ow
.
close
();
}
public
void
provideThumbnail
(
final
Request
baseRequest
,
final
HttpServletResponse
response
)
...
...
@@ -336,4 +304,33 @@ public class CellHandler extends ContextHandler
xout
.
output
(
doc
,
sw
);
return
sw
.
toString
();
}
/**
* Read {@code baseFilename.settings.xml} into a string if it exists.
*
* @return contents of {@code baseFilename.settings.xml} or {@code null} if
* that file couldn't be read.
*/
private
static
String
buildSettingsXML
(
final
String
baseFilename
)
{
final
String
settings
=
baseFilename
+
".settings.xml"
;
if
(
new
File
(
settings
).
exists
()
)
{
try
{
final
SAXBuilder
sax
=
new
SAXBuilder
();
final
Document
doc
=
sax
.
build
(
settings
);
final
XMLOutputter
xout
=
new
XMLOutputter
(
Format
.
getPrettyFormat
()
);
final
StringWriter
sw
=
new
StringWriter
();
xout
.
output
(
doc
,
sw
);
return
sw
.
toString
();
}
catch
(
JDOMException
|
IOException
e
)
{
LOG
.
warn
(
"Could not read settings file \""
+
settings
+
"\""
);
LOG
.
warn
(
e
.
getMessage
()
);
}
}
return
null
;
}
}
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment