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QcmpCompressionLibrary
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BioinformaticDataCompression
QcmpCompressionLibrary
Commits
84e9c0d3
Commit
84e9c0d3
authored
5 years ago
by
Vojtech Moravec
Browse files
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Dispose SCIFIO context.
parent
6e084735
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Changes
2
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2 changed files
src/main/java/azgracompress/DataCompressor.java
+12
-9
12 additions, 9 deletions
src/main/java/azgracompress/DataCompressor.java
src/main/java/azgracompress/cli/ParsedCliOptions.java
+2
-2
2 additions, 2 deletions
src/main/java/azgracompress/cli/ParsedCliOptions.java
with
14 additions
and
11 deletions
src/main/java/azgracompress/DataCompressor.java
+
12
−
9
View file @
84e9c0d3
...
...
@@ -11,6 +11,7 @@ import org.apache.commons.cli.*;
import
java.io.IOException
;
public
class
DataCompressor
{
public
static
void
main
(
String
[]
args
)
{
Options
options
=
CliConstants
.
getOptions
();
...
...
@@ -30,8 +31,10 @@ public class DataCompressor {
}
ParsedCliOptions
parsedCliOptions
=
new
ParsedCliOptions
(
cmd
);
if
(
parsedCliOptions
.
didErrorOccure
())
{
// NOTE(Moravec): From this point we need to dispose of possible existing SCIFIO context.
if
(
parsedCliOptions
.
failedToParse
())
{
System
.
err
.
println
(
parsedCliOptions
.
getError
());
ScifioWrapper
.
dispose
();
return
;
}
...
...
@@ -46,26 +49,27 @@ public class DataCompressor {
if
(!
compressor
.
compress
())
{
System
.
err
.
println
(
"Errors occurred during compression."
);
}
return
;
}
break
;
case
Decompress:
{
ImageDecompressor
decompressor
=
new
ImageDecompressor
(
parsedCliOptions
);
if
(!
decompressor
.
decompress
())
{
System
.
err
.
println
(
"Errors occurred during decompression."
);
}
return
;
}
break
;
case
Benchmark:
{
CompressionBenchmark
.
runBenchmark
(
parsedCliOptions
);
return
;
}
break
;
case
TrainCodebook:
{
ImageCompressor
compressor
=
new
ImageCompressor
(
parsedCliOptions
);
if
(!
compressor
.
trainAndSaveCodebook
())
{
System
.
err
.
println
(
"Errors occurred during training/saving of codebook."
);
}
return
;
}
break
;
case
CustomFunction:
{
// NOTE(Moravec): Custom function class here |
// V
...
...
@@ -73,9 +77,8 @@ public class DataCompressor {
if
(!
customFunction
.
run
())
{
System
.
err
.
println
(
"Errors occurred during custom function."
);
}
return
;
}
break
;
case
PrintHelp:
{
formatter
.
printHelp
(
CliConstants
.
MAIN_HELP
,
options
);
...
...
@@ -90,9 +93,9 @@ public class DataCompressor {
System
.
err
.
println
(
e
.
getMessage
());
e
.
printStackTrace
();
}
return
;
}
break
;
}
return
;
ScifioWrapper
.
dispose
()
;
}
}
This diff is collapsed.
Click to expand it.
src/main/java/azgracompress/cli/ParsedCliOptions.java
+
2
−
2
View file @
84e9c0d3
...
...
@@ -182,7 +182,7 @@ public class ParsedCliOptions {
// inputFileInfo is already created with TIFF type.
assert
(
inputFileInfo
.
getFileType
()
==
FileType
.
TIFF
)
:
"Not TIFF type in parse Tiff arguments."
;
errorOccurred
=
true
;
errorBuilder
.
append
(
"Got TIFF file.\n"
);
...
...
@@ -455,7 +455,7 @@ public class ParsedCliOptions {
return
refPlaneIndexSet
;
}
public
boolean
didErrorOccur
e
()
{
public
boolean
failedToPars
e
()
{
return
errorOccurred
;
}
...
...
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