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BioinformaticDataCompression
QcmpCompressionLibrary
Commits
86ae58d9
Commit
86ae58d9
authored
4 years ago
by
Vojtech Moravec
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Leave preload code in SQImageCompressor.
parent
5b67cd0e
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2 changed files
src/main/java/cz/it4i/qcmp/DataCompressor.java
+2
-2
2 additions, 2 deletions
src/main/java/cz/it4i/qcmp/DataCompressor.java
src/main/java/cz/it4i/qcmp/compression/SQImageCompressor.java
+11
-0
11 additions, 0 deletions
...main/java/cz/it4i/qcmp/compression/SQImageCompressor.java
with
13 additions
and
2 deletions
src/main/java/cz/it4i/qcmp/DataCompressor.java
+
2
−
2
View file @
86ae58d9
...
...
@@ -5,7 +5,7 @@ import cz.it4i.qcmp.cache.QuantizationCacheManager;
import
cz.it4i.qcmp.cli.CliConstants
;
import
cz.it4i.qcmp.cli.CompressionOptionsCLIParser
;
import
cz.it4i.qcmp.cli.CustomFunctionBase
;
import
cz.it4i.qcmp.cli.functions.
Entropy
Calculat
ion
;
import
cz.it4i.qcmp.cli.functions.Calculat
eDifference
;
import
cz.it4i.qcmp.compression.ImageCompressor
;
import
cz.it4i.qcmp.compression.ImageDecompressor
;
import
cz.it4i.qcmp.fileformat.FileExtensions
;
...
...
@@ -93,7 +93,7 @@ public class DataCompressor {
// V
//CustomFunctionBase customFunction = new MeasurePlaneErrorFunction(parsedCliOptions);
// final CustomFunctionBase customFunction = new EntropyCalculation(compressionOptionsCLIParsed);
final
CustomFunctionBase
cf
=
new
Entropy
Calculat
ion
(
compressionOptionsCLIParsed
);
final
CustomFunctionBase
cf
=
new
Calculat
eDifference
(
compressionOptionsCLIParsed
);
if
(!
cf
.
run
())
{
System
.
err
.
println
(
"Errors occurred during custom function."
);
}
...
...
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src/main/java/cz/it4i/qcmp/compression/SQImageCompressor.java
+
11
−
0
View file @
86ae58d9
...
...
@@ -148,10 +148,21 @@ public class SQImageCompressor extends CompressorDecompressorBase implements IIm
final
int
[]
planeIndices
=
getPlaneIndicesForCompression
(
options
.
getInputDataInfo
());
final
long
[]
planeDataSizes
=
new
long
[
planeIndices
.
length
];
int
planeCounter
=
0
;
// final int[][] preloadedPlaneData;
// try {
// preloadedPlaneData = planeLoader.loadPlanesU16DataTo2dArray(planeIndices);
// } catch (final IOException ex) {
// throw new ImageCompressionException("Unable to preload plane data.", ex);
// }
// final int index = 0;
for
(
final
int
planeIndex
:
planeIndices
)
{
stopwatch
.
restart
();
final
int
[]
planeData
;
// planeData = preloadedPlaneData[index++];
try
{
planeData
=
planeLoader
.
loadPlaneData
(
planeIndex
);
}
catch
(
final
IOException
ex
)
{
...
...
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