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BioinformaticDataCompression
QcmpCompressionLibrary
Commits
cfd63b90
Commit
cfd63b90
authored
4 years ago
by
Vojtech Moravec
Browse files
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Implement wrapping for voxel loading.
parent
231280e8
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Changes
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1 changed file
src/main/java/azgracompress/io/loader/BasicLoader.java
+59
-10
59 additions, 10 deletions
src/main/java/azgracompress/io/loader/BasicLoader.java
with
59 additions
and
10 deletions
src/main/java/azgracompress/io/loader/BasicLoader.java
+
59
−
10
View file @
cfd63b90
...
...
@@ -206,21 +206,44 @@ public abstract class BasicLoader {
int
srcX
,
srcY
,
srcZ
;
for
(
int
z
=
0
;
z
<
voxelDim
.
getZ
();
z
++)
{
srcZ
=
voxelZOffset
+
z
;
if
(
srcZ
>=
dims
.
getZ
())
{
// Handle plane overflow.
break
;
if
(
wrappingStrategy
==
DataWrappingStrategy
.
LeaveBlank
)
{
break
;
}
else
if
(
wrappingStrategy
==
DataWrappingStrategy
.
ClampToEdge
)
{
srcZ
=
dims
.
getZ
()
-
1
;
}
else
if
(
wrappingStrategy
==
DataWrappingStrategy
.
MirroredRepeat
)
{
srcZ
=
dims
.
getZ
()
-
((
srcZ
-
dims
.
getZ
())
+
1
);
}
}
for
(
int
y
=
0
;
y
<
voxelDim
.
getY
();
y
++)
{
srcY
=
voxelYOffset
+
y
;
if
(
srcY
>=
dims
.
getY
())
{
// Handle row overflow.
break
;
if
(
wrappingStrategy
==
DataWrappingStrategy
.
LeaveBlank
)
{
break
;
}
else
if
(
wrappingStrategy
==
DataWrappingStrategy
.
ClampToEdge
)
{
srcY
=
dims
.
getY
()
-
1
;
}
else
if
(
wrappingStrategy
==
DataWrappingStrategy
.
MirroredRepeat
)
{
srcY
=
dims
.
getY
()
-
((
srcY
-
dims
.
getY
())
+
1
);
}
}
for
(
int
x
=
0
;
x
<
voxelDim
.
getX
();
x
++)
{
srcX
=
voxelXOffset
+
x
;
if
(
srcX
>=
dims
.
getX
())
{
// Handle column overflow
break
;
// Handle column overflow.
if
(
wrappingStrategy
==
DataWrappingStrategy
.
LeaveBlank
)
{
break
;
}
else
if
(
wrappingStrategy
==
DataWrappingStrategy
.
ClampToEdge
)
{
srcX
=
dims
.
getX
()
-
1
;
}
else
if
(
wrappingStrategy
==
DataWrappingStrategy
.
MirroredRepeat
)
{
srcX
=
dims
.
getX
()
-
((
srcX
-
dims
.
getX
())
+
1
);
}
}
voxel
[
Voxel
.
dataIndex
(
x
,
y
,
z
,
voxelDim
)]
=
valueAt
(
srcZ
,
Block
.
index
(
srcX
,
srcY
,
dims
.
getX
()));
...
...
@@ -236,17 +259,33 @@ public abstract class BasicLoader {
final
V3i
voxelDim
)
{
int
srcX
,
srcY
;
for
(
int
z
=
0
;
z
<
voxelDim
.
getZ
();
z
++)
{
// NOTE(Moravec): Plane overflow is handled by the caller which provides correct planesData.
for
(
int
y
=
0
;
y
<
voxelDim
.
getY
();
y
++)
{
srcY
=
voxelYOffset
+
y
;
if
(
srcY
>=
dims
.
getY
())
{
// Handle row overflow.
break
;
if
(
wrappingStrategy
==
DataWrappingStrategy
.
LeaveBlank
)
{
break
;
}
else
if
(
wrappingStrategy
==
DataWrappingStrategy
.
ClampToEdge
)
{
srcY
=
dims
.
getY
()
-
1
;
}
else
if
(
wrappingStrategy
==
DataWrappingStrategy
.
MirroredRepeat
)
{
srcY
=
dims
.
getY
()
-
((
srcY
-
dims
.
getY
())
+
1
);
}
}
for
(
int
x
=
0
;
x
<
voxelDim
.
getX
();
x
++)
{
srcX
=
voxelXOffset
+
x
;
if
(
srcX
>=
dims
.
getX
())
{
// Handle column overflow
break
;
// Handle column overflow.
if
(
wrappingStrategy
==
DataWrappingStrategy
.
LeaveBlank
)
{
break
;
}
else
if
(
wrappingStrategy
==
DataWrappingStrategy
.
ClampToEdge
)
{
srcX
=
dims
.
getX
()
-
1
;
}
else
if
(
wrappingStrategy
==
DataWrappingStrategy
.
MirroredRepeat
)
{
srcX
=
dims
.
getX
()
-
((
srcX
-
dims
.
getX
())
+
1
);
}
}
voxel
[
Voxel
.
dataIndex
(
x
,
y
,
z
,
voxelDim
)]
=
planesData
[
z
][
Block
.
index
(
srcX
,
srcY
,
dims
.
getX
())];
...
...
@@ -286,12 +325,20 @@ public abstract class BasicLoader {
}
private
void
preloadPlanesData
(
final
int
[][]
planesData
,
final
int
planeOffset
,
final
int
count
)
throws
IOException
{
for
(
int
i
=
0
;
i
<
count
;
i
++)
{
if
(
planeOffset
+
i
<
dims
.
getZ
())
planesData
[
i
]
=
loadPlaneData
(
planeOffset
+
i
);
else
planesData
[
i
]
=
new
int
[
dims
.
toV2i
().
multiplyTogether
()];
else
{
if
(
wrappingStrategy
==
DataWrappingStrategy
.
LeaveBlank
)
{
planesData
[
i
]
=
new
int
[
dims
.
toV2i
().
multiplyTogether
()];
}
else
if
(
wrappingStrategy
==
DataWrappingStrategy
.
ClampToEdge
)
{
assert
(
i
>
0
)
:
"Overflow on the first plane of voxel???"
;
planesData
[
i
]
=
planesData
[
i
-
1
];
}
else
if
(
wrappingStrategy
==
DataWrappingStrategy
.
MirroredRepeat
)
{
final
int
srcZ
=
dims
.
getZ
()
-
(((
planeOffset
+
i
)
-
dims
.
getZ
())
+
1
);
planesData
[
i
]
=
loadPlaneData
(
srcZ
);
}
}
}
}
...
...
@@ -310,7 +357,9 @@ public abstract class BasicLoader {
final
int
[][]
planesData
=
new
int
[
voxelDim
.
getZ
()][
0
];
for
(
int
voxelZOffset
=
planeRange
.
getFrom
();
voxelZOffset
<
planeRange
.
getTo
();
voxelZOffset
+=
voxelDim
.
getZ
())
{
preloadPlanesData
(
planesData
,
voxelZOffset
,
voxelDim
.
getZ
());
for
(
int
voxelYOffset
=
0
;
voxelYOffset
<
dims
.
getY
();
voxelYOffset
+=
voxelDim
.
getY
())
{
for
(
int
voxelXOffset
=
0
;
voxelXOffset
<
dims
.
getX
();
voxelXOffset
+=
voxelDim
.
getX
())
{
loadVoxel
(
voxels
[
voxelIndex
++],
planesData
,
voxelXOffset
,
voxelYOffset
,
voxelDim
);
...
...
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