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BioinformaticDataCompression
QcmpCompressionLibrary
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ba8bd1fc0c39d1cf723c7a9b21ff078d8c74f80c
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6
basic_app
extended_loader_api
extended_loader_api_no_scifio
kd-tree
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protected
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Created with Raphaël 2.2.0
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Base prep for IQcmpFile abstraction.
extended_loader…
extended_loader_api_no_scifio remote_mirror_701bdfbf0906799083a929d8ef613956/extended_loader_api_no_scifio
Implement missing logic in QCMPFileHeaderV2.
Basic preparation for second version of QCMP file header.
Modify QCMPFileHeaderV1 header variables.
Rename QcmpFileHeader -> QCMPFileHeaderV1.
Draft of the QCMP v2 format.
Add blank line to fix table rendering.
Create FileTypeInspector which determine file type based on magic value.
Move classes from cache package to io package.
Propagate IOException from reading/writing of QVC files.
Implement conversion of QVC files.
Extract QvcFile writing/saving functions to QvcFileWriter.
Move Qvc* classes to fileformat package.
Prepare QVC conversion.
Improve formatting of QvcHeader report.
Fix QVC header validation and output better error message.
Write binary encoded huffman tree in compression.
Read new version of QVC files in QuantizationCacheManager.
Use the improved codebook API.
Fix names of renamed classes.
Make createSymbolCodes static.
Write the new qvc format and read both formats.
Prepare QVC file changes.
Extend (SQ|VQ)Codebook from Codebook.
Create base class for codebooks.
Rename cache file classes
Create V2 of QvcFile format.
Rename CacheFileHeaderV1->QvcHeaderV1
Move encode functionality to HuffmanEncoder class.
Move symbol decoding to HuffmanDecoder class.
Refactor Huffman code.
Implemect QCMPFileHeader as IFileHeader.
Move CacheFileHeaderV1 out of cache package.
Add IFileHeader interface and implement it in CacheFileHeaderV1.
Move CacheFileHeader to fileformat package.
Add commented out smape metric.
Debugging the new huffman code.
Add very compact method for saving Huffman trees.
Rename the BitStream functions.
Add tree node equality function.
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