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X Window System
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===============

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The X Window system is a principal way to get GUI access to the clusters. The **X Window System** (commonly known as **X11**, based on its current major version being 11, or shortened to simply **X**, and sometimes informally **X-Windows**) is a computer software system and network [protocol](http://en.wikipedia.org/wiki/Protocol_%28computing%29 "Protocol (computing)") that provides a basis for [graphical user interfaces](http://en.wikipedia.org/wiki/Graphical_user_interface "Graphical user interface") (GUIs) and rich input device capability for [networked computers](http://en.wikipedia.org/wiki/Computer_network "Computer network").
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>The X display forwarding must be activated and the X server running on client side
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### X display

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In order to display graphical user interface GUI of various software tools, you need to enable the X display forwarding. On Linux and Mac, log in using the -X option tho ssh client:
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```bash
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 local $ ssh -X username@cluster-name.it4i.cz
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```
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### X Display Forwarding on Windows

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On Windows use the PuTTY client to enable X11 forwarding. In PuTTY menu, go to Connection->SSH->X11, mark the Enable X11 forwarding checkbox before logging in. Then log in as usual.
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To verify the forwarding, type

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```bash
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$ echo $DISPLAY
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```
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if you receive something like

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```bash
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localhost:10.0
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```
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then the X11 forwarding is enabled.

### X Server

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In order to display graphical user interface GUI of various software tools, you need running X server on your desktop computer. For Linux users, no action is required as the X server is the default GUI environment on most Linux distributions. Mac and Windows users need to install and run the X server on their workstations.
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### X Server on OS X

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Mac OS users need to install [XQuartz server](http://xquartz.macosforge.org/landing/).
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### X Server on Windows

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There are variety of X servers available for Windows environment. The commercial Xwin32 is very stable and rich featured. The Cygwin environment provides fully featured open-source XWin X server. For simplicity, we recommend open-source X server by the [Xming project](http://sourceforge.net/projects/xming/). For stability and full features we recommend the
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[XWin](http://x.cygwin.com/) X server by Cygwin

 |How to use Xwin |How to use Xming |
 | --- | --- |
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 |[Install Cygwin](http://x.cygwin.com/)Find and execute XWin.exeto start the X server on Windows desktop computer.[If no able to forward X11 using PuTTY to CygwinX](x-window-system/cygwin-and-x11-forwarding.html) |<p>Use Xlaunch to configure the Xming.<p>Run Xmingto start the X server on Windows desktop computer.|
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Read more on [http://www.math.umn.edu/systems_guide/putty_xwin32.html](http://www.math.umn.edu/systems_guide/putty_xwin32.shtml)
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### Running GUI Enabled Applications

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>Make sure that X forwarding is activated and the X server is running.
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Then launch the application as usual. Use the & to run the application in background.
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```bash
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$ module load intel (idb and gvim not installed yet)
$ gvim &
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```
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```bash
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$ xterm
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```
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In this example, we activate the intel programing environment tools, then start the graphical gvim editor.
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### GUI Applications on Compute Nodes

Allocate the compute nodes using -X option on the qsub command

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```bash
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$ qsub -q qexp -l select=2:ncpus=24 -X -I
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```
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In this example, we allocate 2 nodes via qexp queue, interactively. We request X11 forwarding with the -X option. It will be possible to run the GUI enabled applications directly on the first compute node.
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**Better performance** is obtained by logging on the allocated compute node via ssh, using the -X option.
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```bash
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$ ssh -X r24u35n680
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```
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In this example, we log in on the r24u35n680 compute node, with the X11 forwarding enabled.
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### The Gnome GUI Environment

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The Gnome 2.28 GUI environment is available on the clusters. We recommend to use separate X server window for displaying the Gnome environment.
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### Gnome on Linux and OS X

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To run the remote Gnome session in a window on Linux/OS X computer, you need to install Xephyr. Ubuntu package is
xserver-xephyr, on OS X it is part of [XQuartz](http://xquartz.macosforge.org/landing/). First, launch Xephyr on local machine:
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```bash
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local $ Xephyr -ac -screen 1024x768 -br -reset -terminate :1 &
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```
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This will open a new X window with size 1024x768 at DISPLAY :1. Next, ssh to the cluster with DISPLAY environment variable set and launch  gnome-session
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```bash
local $ DISPLAY=:1.0 ssh -XC yourname@cluster-name.it4i.cz -i ~/.ssh/path_to_your_key
... cluster-name MOTD...
yourname@login1.cluster-namen.it4i.cz $ gnome-session &
```
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On older systems where Xephyr is not available, you may also try Xnest instead of Xephyr. Another option is to launch a new X server in a separate console, via:
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```bash
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xinit /usr/bin/ssh -XT -i .ssh/path_to_your_key yourname@cluster-namen.it4i.cz gnome-session -- :1 vt12
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```
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However this method does not seem to work with recent Linux distributions and you will need to manually source
/etc/profile to properly set environment variables for PBS.
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### Gnome on Windows

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Use Xlaunch to start the Xming server or run the XWin.exe. Select the "One window" mode.
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Log in to the cluster, using PuTTY. On the cluster, run the gnome-session command.
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```bash
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$ gnome-session &
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```
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In this way, we run remote gnome session on the cluster, displaying it in the local X server
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Use System-&gt;Log Out to close the gnome-session