compute-nodes.md

Compute Nodes

Nodes Configuration

Anselm is cluster of x86-64 Intel based nodes built on Bull Extreme Computing bullx technology. The cluster contains four types of compute nodes.

###Compute Nodes Without Accelerator

180 nodes

2880 cores in total

two Intel Sandy Bridge E5-2665, 8-core, 2.4GHz processors per node

64 GB of physical memory per node

• one 500GB SATA 2,5” 7,2 krpm HDD per node

bullx B510 blade servers

cn[1-180]

###Compute Nodes With GPU Accelerator

23 nodes

368 cores in total

two Intel Sandy Bridge E5-2470, 8-core, 2.3GHz processors per node

96 GB of physical memory per node

• one 500GB SATA 2,5” 7,2 krpm HDD per node

GPU accelerator 1x NVIDIA Tesla Kepler K20 per node

bullx B515 blade servers

cn[181-203]

###Compute Nodes With MIC Accelerator

4 nodes

64 cores in total

two Intel Sandy Bridge E5-2470, 8-core, 2.3GHz processors per node

96 GB of physical memory per node

• one 500GB SATA 2,5” 7,2 krpm HDD per node

MIC accelerator 1x Intel Phi 5110P per node

bullx B515 blade servers

cn[204-207]

###Fat Compute Nodes

2 nodes

32 cores in total

2 Intel Sandy Bridge E5-2665, 8-core, 2.4GHz processors per node

512 GB of physical memory per node

• two 300GB SAS 3,5”15krpm HDD (RAID1) per node

two 100GB SLC SSD per node

bullx R423-E3 servers

cn[208-209]

 

Figure Anselm bullx B510 servers

Compute Nodes Summary

Node type	Count	Range	Memory	Cores	Access
Nodes without accelerator	180	cn[1-180]	64GB	16 @ 2.4Ghz	qexp, qprod, qlong, qfree
Nodes with GPU accelerator	23	cn[181-203]	96GB	16 @ 2.3Ghz	qgpu, qprod
Nodes with MIC accelerator	4	cn[204-207]	96GB	16 @ 2.3GHz	qmic, qprod
Fat compute nodes	2	cn[208-209]	512GB	16 @ 2.4GHz	qfat, qprod

Processor Architecture

Anselm is equipped with Intel Sandy Bridge processors Intel Xeon E5-2665 (nodes without accelerator and fat nodes) and Intel Xeon E5-2470 (nodes with accelerator). Processors support Advanced Vector Extensions (AVX) 256-bit instruction set.

Intel Sandy Bridge E5-2665 Processor

• eight-core

• speed: 2.4 GHz, up to 3.1 GHz using Turbo Boost Technology

• peak performance: 19.2 Gflop/s per core

• caches:

  • L2: 256 KB per core
  • L3: 20 MB per processor

• memory bandwidth at the level of the processor: 51.2 GB/s

Intel Sandy Bridge E5-2470 Processor

• eight-core

• speed: 2.3 GHz, up to 3.1 GHz using Turbo Boost Technology

• peak performance: 18.4 Gflop/s per core

• caches:

  • L2: 256 KB per core
  • L3: 20 MB per processor

• memory bandwidth at the level of the processor: 38.4 GB/s

 

Nodes equipped with Intel Xeon E5-2665 CPU have set PBS resource attribute cpu_freq = 24, nodes equipped with Intel Xeon E5-2470 CPU have set PBS resource attribute cpu_freq = 23.

$ qsub -A OPEN-0-0 -q qprod -l select=4:ncpus=16:cpu_freq=24 -I

In this example, we allocate 4 nodes, 16 cores at 2.4GHhz per node.

Intel Turbo Boost Technology is used by default,  you can disable it for all nodes of job by using resource attribute cpu_turbo_boost.

$ qsub -A OPEN-0-0 -q qprod -l select=4:ncpus=16 -l cpu_turbo_boost=0 -I

Memory Architecture

Compute Node Without Accelerator

• 2 sockets

• Memory Controllers are integrated into processors.

  • 8 DDR3 DIMMS per node
  • 4 DDR3 DIMMS per CPU
  • 1 DDR3 DIMMS per channel
  • Data rate support: up to 1600MT/s

• Populated memory: 8x 8GB DDR3 DIMM 1600Mhz

Compute Node With GPU or MIC Accelerator

• 2 sockets

• Memory Controllers are integrated into processors.

  • 6 DDR3 DIMMS per node
  • 3 DDR3 DIMMS per CPU
  • 1 DDR3 DIMMS per channel
  • Data rate support: up to 1600MT/s

• Populated memory: 6x 16GB DDR3 DIMM 1600Mhz

Fat Compute Node

• 2 sockets

• Memory Controllers are integrated into processors.

  • 16 DDR3 DIMMS per node
  • 8 DDR3 DIMMS per CPU
  • 2 DDR3 DIMMS per channel
  • Data rate support: up to 1600MT/s

• Populated memory: 16x 32GB DDR3 DIMM 1600Mhz