add all necesary dependecies

copy-required-jars

+#!/usr/bin/env bash
+#this script copies required libraries into Fiji installation directory
+DIR=`readlink -f $1`
+cd haas-spim-benchmark/target/dependency
+cp axis-*.jar mail-*.jar commons-discovery-*.jar java-scpclient-*.jar jaxrpc-api-*.jar wsdl4j-*.jar haas-imagej-client-*.jar haas-java-client-*.jar $DIR/jars
+
+cd ../../../haas-spim-benchmark/target/
+cp haas-spim-benchmark-*[0-9T].jar $DIR/plugins

haas-java-client/.settings/org.eclipse.core.resources.prefs

 eclipse.preferences.version=1
+encoding//src/main/java=UTF-8
 encoding//src/main/java/cz/it4i/fiji/haas_java_client/proxy/AsymmetricKeyCredentialsExt.java=UTF-8
 encoding//src/main/java/cz/it4i/fiji/haas_java_client/proxy/AuthenticationCredentialsExt.java=UTF-8
 encoding//src/main/java/cz/it4i/fiji/haas_java_client/proxy/ClusterNodeTypeExt.java=UTF-8
@@ -36,3 +37,7 @@ encoding//src/main/java/cz/it4i/fiji/haas_java_client/proxy/UserAndLimitationMan
 encoding//src/main/java/cz/it4i/fiji/haas_java_client/proxy/UserAndLimitationManagementWsSoap.java=UTF-8
 encoding//src/main/java/cz/it4i/fiji/haas_java_client/proxy/UserAndLimitationManagementWsSoap12Stub.java=UTF-8
 encoding//src/main/java/cz/it4i/fiji/haas_java_client/proxy/UserAndLimitationManagementWsSoapStub.java=UTF-8
+encoding//src/main/resources=UTF-8
+encoding//src/test/java=UTF-8
+encoding//src/test/resources=UTF-8
+encoding/<project>=UTF-8

haas-java-client/pom.xml

@@ -47,18 +47,12 @@
 			<version>0.0.1-SNAPSHOT</version>
 		</dependency>
 		
-		<!-- https://mvnrepository.com/artifact/javax.activation/activation -->
-		<dependency>
-			<groupId>javax.activation</groupId>
-			<artifactId>activation</artifactId>
-			<version>1.1.1</version>
-		</dependency>
-		<!-- https://mvnrepository.com/artifact/javax.mail/mail -->
-		<dependency>
-			<groupId>javax.mail</groupId>
-			<artifactId>mail</artifactId>
-			<version>1.4.7</version>
-		</dependency>
+		<!-- https://mvnrepository.com/artifact/javax.mail/mail --> 
+	    <dependency> 
+	      <groupId>javax.mail</groupId> 
+	      <artifactId>mail</artifactId> 
+	      <version>1.4.7</version> 
+	    </dependency> 
 		<!-- https://mvnrepository.com/artifact/org.apache.axis/axis -->
 		<dependency>
 			<groupId>org.apache.axis</groupId>
@@ -72,17 +66,13 @@
 			<version>0.2</version>
 		</dependency>
 		<!-- https://mvnrepository.com/artifact/javax.xml/jaxrpc -->
+		<!-- https://mvnrepository.com/artifact/javax.xml/jaxrpc-api -->
 		<dependency>
-			<groupId>javax.xml</groupId>
-			<artifactId>jaxrpc</artifactId>
-			<version>1.1</version>
-		</dependency>
-		<!-- https://mvnrepository.com/artifact/javax.xml.soap/saaj-api -->
-		<dependency>
-			<groupId>javax.xml.soap</groupId>
-			<artifactId>saaj-api</artifactId>
-			<version>1.3.5</version>
+		    <groupId>javax.xml</groupId>
+		    <artifactId>jaxrpc-api</artifactId>
+		    <version>1.1</version>
 		</dependency>
+
 		<!-- https://mvnrepository.com/artifact/wsdl4j/wsdl4j -->
 		<dependency>
 			<groupId>wsdl4j</groupId>
@@ -90,25 +80,7 @@
 			<version>1.5.1</version>
 		</dependency>
 
-		<!-- https://mvnrepository.com/artifact/commons-logging/commons-logging -->
-		<dependency>
-			<groupId>commons-logging</groupId>
-			<artifactId>commons-logging</artifactId>
-			<version>1.1.1</version>
-		</dependency>
-		<!-- https://mvnrepository.com/artifact/org.slf4j/slf4j-api -->
-		<dependency>
-			<groupId>org.slf4j</groupId>
-			<artifactId>slf4j-api</artifactId>
-			<version>1.7.25</version>
-		</dependency>
-		<!-- https://mvnrepository.com/artifact/org.slf4j/slf4j-jdk14 -->
-		<dependency>
-			<groupId>org.slf4j</groupId>
-			<artifactId>slf4j-jdk14</artifactId>
-			<version>1.7.25</version>
-			<optional>true</optional>
-		</dependency>
+		
 	</dependencies>
 	<distributionManagement>
 		<repository>

haas-spim-benchmark/pom.xml

@@ -101,19 +101,4 @@
 			<scope>provided</scope>
 		</dependency>
 	</dependencies>
-
-	<build>
-		<plugins>
-			<plugin>
-				<groupId>org.apache.maven.plugins</groupId>
-				<artifactId>maven-dependency-plugin</artifactId>
-				<configuration>
-					<outputDirectory>
-						${project.build.directory}/jars
-					</outputDirectory>
-				</configuration>
-			</plugin>
-
-		</plugins>
-	</build>
 </project>

pom.xml

@@ -28,6 +28,12 @@
 				</plugin>
 			</plugins>
 		</pluginManagement>
+		<plugins>
+			<plugin>
+				<groupId>org.apache.maven.plugins</groupId>
+				<artifactId>maven-dependency-plugin</artifactId>
+			</plugin>
+		</plugins>
 	</build>
 
 </project>