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Commit c5258a7a authored by Jan Kožusznik's avatar Jan Kožusznik
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split to more modules

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haas-imagej-client/src/main/java/cz/it4i/fiji/haas/FXFrame.java → haas-imagej-client/src/main/java/cz/it4i/fiji/haas/ui/FXFrame.java
+ 1
− 1
View file @ c5258a7a
package cz.it4i.fiji.haas;
package cz.it4i.fiji.haas.ui;
import java.awt.Dimension;
import java.awt.Frame;
......
haas-imagej-client/src/main/java/cz/it4i/fiji/haas/ModalDialogs.java → haas-imagej-client/src/main/java/cz/it4i/fiji/haas/ui/ModalDialogs.java
+ 1
− 1
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package cz.it4i.fiji.haas;
package cz.it4i.fiji.haas.ui;
import javax.swing.JDialog;
import javax.swing.WindowConstants;
......
haas-imagej-client/src/main/java/cz/it4i/fiji/haas/ui/ProgressDialog.java
+ 1
− 1
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package cz.it4i.fiji.haas.ui;
package cz.it4i.fiji.haas.ui;
import java.awt.Adjustable;
......
haas-snakemake-spim/pom.xml 0 → 100644
+ 94
− 0
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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>org.scijava</groupId>
<artifactId>pom-scijava</artifactId>
<version>17.1.1</version>
<relativePath />
</parent>
<groupId>cz.it4i.fiji</groupId>
<artifactId>haas-snakemake-spim</artifactId>
<version>0.0.1-SNAPSHOT</version>
<packaging>jar</packaging>
<name>Plugins for running SPIM automated workflow by IT4I HaaS.</name>
<description>This example provides an introduction to writing ImageJ commands.</description>
<url>https://github.com/[MY-ORG]/[MY-REPO]</url>
<inceptionYear>2013</inceptionYear>
<organization>
<name>[MY-ORGANIZATION-NAME]</name>
<url>[MY-ORGANIZATION-WEB-SITE]</url>
</organization>
<licenses>
<license>
<name>CC0 1.0 Universal License</name>
<url>http://creativecommons.org/publicdomain/zero/1.0/</url>
<distribution>repo</distribution>
</license>
</licenses>
<developers>
<developer>
<id>[MY-GITHUB-ID]</id>
<name>[MY-FULL-NAME]</name>
<url>https://imagej.net/User:[MY-IMAGEJ-WIKI-ACCOUNT]</url>
</developer>
</developers>
<contributors>
<contributor>
<name>None</name>
</contributor>
</contributors>
<mailingLists>
<mailingList>
<name>ImageJ Forum</name>
<archive>http://forum.imagej.net/</archive>
</mailingList>
</mailingLists>
<scm>
<connection>scm:git:git://github.com/[MY-ORG]/[MY-REPO]</connection>
<developerConnection>scm:git:git@github.com:[MY-ORG]/[MY-REPO]</developerConnection>
<tag>HEAD</tag>
<url>https://github.com/[MY-ORG]/[MY-REPO]</url>
</scm>
<issueManagement>
<system>GitHub Issues</system>
<url>http://github.com/[MY-ORG]/[MY-REPO]/issues</url>
</issueManagement>
<ciManagement>
<system>None</system>
</ciManagement>
<repositories>
<repository>
<id>imagej.public</id>
<url>http://maven.imagej.net/content/groups/public</url>
</repository>
</repositories>
<dependencies>
<dependency>
<groupId>net.imagej</groupId>
<artifactId>imagej</artifactId>
</dependency>
<dependency>
<groupId>cz.it4i.fiji</groupId>
<artifactId>haas-imagej-client</artifactId>
<version>0.0.1-SNAPSHOT</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.slf4j/slf4j-api -->
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
</dependency>
<!-- https://mvnrepository.com/artifact/org.slf4j/slf4j-jdk14 -->
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-simple</artifactId>
</dependency>
</dependencies>
</project>
\ No newline at end of file
haas-imagej-client/src/main/java/cz/it4i/fiji/haas/CheckStatusOfHaaS.java → haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/commands/CheckStatusOfHaaS.java
+ 5
− 1
View file @ c5258a7a
package cz.it4i.fiji.haas;
package cz.it4i.fiji.haas_snakemake_spim.commands;
import java.awt.Frame;
import java.io.File;
......@@ -16,8 +16,12 @@ import org.scijava.ui.ApplicationFrame;
import org.scijava.ui.UIService;
import org.scijava.widget.UIComponent;
import cz.it4i.fiji.haas.JobManager;
import cz.it4i.fiji.haas.TestingConstants;
import cz.it4i.fiji.haas.JobManager.JobInfo;
import cz.it4i.fiji.haas.ui.ModalDialogs;
import cz.it4i.fiji.haas.ui.ProgressDialog;
import cz.it4i.fiji.haas_snakemake_spim.ui.CheckStatusOfHaaSWindow;
import net.imagej.ImageJ;
/**
......
haas-imagej-client/src/main/java/cz/it4i/fiji/haas/RunWithHaaS.java → haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/commands/RunWithHaaS.java
+ 4
− 1
View file @ c5258a7a
package cz.it4i.fiji.haas;
package cz.it4i.fiji.haas_snakemake_spim.commands;
import java.awt.Frame;
import java.io.File;
......@@ -18,6 +18,9 @@ import org.scijava.ui.ApplicationFrame;
import org.scijava.ui.UIService;
import org.scijava.widget.UIComponent;
import cz.it4i.fiji.haas.JobManager;
import cz.it4i.fiji.haas.TestingConstants;
import cz.it4i.fiji.haas.ui.ModalDialogs;
import cz.it4i.fiji.haas.ui.ProgressDialog;
import cz.it4i.fiji.haas_java_client.HaaSClient;
import net.imagej.ImageJ;
......
haas-imagej-client/src/main/java/cz/it4i/fiji/haas/ui/CheckStatusOfHaaS.fxml → haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/ui/CheckStatusOfHaaS.fxml
+ 1
− 1
View file @ c5258a7a
......@@ -4,7 +4,7 @@
<?import javafx.scene.control.TableView?>
<?import javafx.scene.layout.BorderPane?>
<BorderPane maxHeight="-Infinity" maxWidth="-Infinity" minHeight="-Infinity" minWidth="-Infinity" prefHeight="400.0" prefWidth="912.0" xmlns="http://javafx.com/javafx/8.0.65" xmlns:fx="http://javafx.com/fxml/1" fx:controller="cz.it4i.fiji.haas.ui.CheckStatusOfHaaSController">
<BorderPane maxHeight="-Infinity" maxWidth="-Infinity" minHeight="-Infinity" minWidth="-Infinity" prefHeight="400.0" prefWidth="912.0" xmlns="http://javafx.com/javafx/8.0.65" xmlns:fx="http://javafx.com/fxml/1" fx:controller="cz.it4i.fiji.haas_snakemake_spim.ui.CheckStatusOfHaaSController">
<center>
<TableView fx:id="jobs" prefHeight="400.0" prefWidth="675.0" BorderPane.alignment="CENTER">
<columns>
......
haas-imagej-client/src/main/java/cz/it4i/fiji/haas/ui/CheckStatusOfHaaSController.java → haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/ui/CheckStatusOfHaaSController.java
+ 4
− 2
View file @ c5258a7a
package cz.it4i.fiji.haas.ui;
package cz.it4i.fiji.haas_snakemake_spim.ui;
import java.awt.Window;
import java.util.function.Function;
......@@ -7,7 +7,9 @@ import org.scijava.log.LogService;
import org.scijava.plugin.Parameter;
import cz.it4i.fiji.haas.JobManager.JobInfo;
import cz.it4i.fiji.haas.ModalDialogs;
import cz.it4i.fiji.haas.ui.ModalDialogs;
import cz.it4i.fiji.haas.ui.ObservableValueAdapter;
import cz.it4i.fiji.haas.ui.ProgressDialog;
import javafx.application.Platform;
import javafx.event.ActionEvent;
import javafx.event.EventHandler;
......
haas-imagej-client/src/main/java/cz/it4i/fiji/haas/CheckStatusOfHaaSWindow.java → haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/ui/CheckStatusOfHaaSWindow.java
+ 2
− 2
View file @ c5258a7a
package cz.it4i.fiji.haas;
package cz.it4i.fiji.haas_snakemake_spim.ui;
import java.awt.Frame;
......@@ -6,7 +6,7 @@ import org.scijava.Context;
import org.scijava.plugin.Parameter;
import cz.it4i.fiji.haas.JobManager.JobInfo;
import cz.it4i.fiji.haas.ui.CheckStatusOfHaaSController;
import cz.it4i.fiji.haas.ui.FXFrame;
import javafx.application.Platform;
public class CheckStatusOfHaaSWindow extends FXFrame<CheckStatusOfHaaSController> {
......
haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/ui/package-info.java 0 → 100644
+ 8
− 0
View file @ c5258a7a
/**
*
*/
/**
* @author koz01
*
*/
package cz.it4i.fiji.haas_snakemake_spim.ui;
\ No newline at end of file
haas-spim-benchmark/pom.xml 0 → 100644
+ 94
− 0
View file @ c5258a7a
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>org.scijava</groupId>
<artifactId>pom-scijava</artifactId>
<version>17.1.1</version>
<relativePath />
</parent>
<groupId>cz.it4i.fiji</groupId>
<artifactId>haas-spim-benchmark</artifactId>
<version>0.0.1-SNAPSHOT</version>
<packaging>jar</packaging>
<name>Plugins for running SPIM automated workflow by IT4I HaaS.</name>
<description>This example provides an introduction to writing ImageJ commands.</description>
<url>https://github.com/[MY-ORG]/[MY-REPO]</url>
<inceptionYear>2013</inceptionYear>
<organization>
<name>[MY-ORGANIZATION-NAME]</name>
<url>[MY-ORGANIZATION-WEB-SITE]</url>
</organization>
<licenses>
<license>
<name>CC0 1.0 Universal License</name>
<url>http://creativecommons.org/publicdomain/zero/1.0/</url>
<distribution>repo</distribution>
</license>
</licenses>
<developers>
<developer>
<id>[MY-GITHUB-ID]</id>
<name>[MY-FULL-NAME]</name>
<url>https://imagej.net/User:[MY-IMAGEJ-WIKI-ACCOUNT]</url>
</developer>
</developers>
<contributors>
<contributor>
<name>None</name>
</contributor>
</contributors>
<mailingLists>
<mailingList>
<name>ImageJ Forum</name>
<archive>http://forum.imagej.net/</archive>
</mailingList>
</mailingLists>
<scm>
<connection>scm:git:git://github.com/[MY-ORG]/[MY-REPO]</connection>
<developerConnection>scm:git:git@github.com:[MY-ORG]/[MY-REPO]</developerConnection>
<tag>HEAD</tag>
<url>https://github.com/[MY-ORG]/[MY-REPO]</url>
</scm>
<issueManagement>
<system>GitHub Issues</system>
<url>http://github.com/[MY-ORG]/[MY-REPO]/issues</url>
</issueManagement>
<ciManagement>
<system>None</system>
</ciManagement>
<repositories>
<repository>
<id>imagej.public</id>
<url>http://maven.imagej.net/content/groups/public</url>
</repository>
</repositories>
<dependencies>
<dependency>
<groupId>net.imagej</groupId>
<artifactId>imagej</artifactId>
</dependency>
<dependency>
<groupId>cz.it4i.fiji</groupId>
<artifactId>haas-imagej-client</artifactId>
<version>0.0.1-SNAPSHOT</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.slf4j/slf4j-api -->
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
</dependency>
<!-- https://mvnrepository.com/artifact/org.slf4j/slf4j-jdk14 -->
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-simple</artifactId>
</dependency>
</dependencies>
</project>
\ No newline at end of file
haas-imagej-client/src/main/java/cz/it4i/fiji/haas/BenchmarkJobManager.java → haas-spim-benchmark/src/main/java/cz/it4i/fiji/haas_spim_benchmark/core/BenchmarkJobManager.java
+ 4
− 1
View file @ c5258a7a
package cz.it4i.fiji.haas;
package cz.it4i.fiji.haas_spim_benchmark.core;
import java.io.IOException;
import java.io.InputStream;
......@@ -14,6 +14,9 @@ import java.util.stream.Collectors;
import org.yaml.snakeyaml.Yaml;
import cz.it4i.fiji.haas.JobManager;
import cz.it4i.fiji.haas.TestingConstants;
import cz.it4i.fiji.haas.UploadingFileFromResource;
import cz.it4i.fiji.haas.JobManager.JobInfo;
import cz.it4i.fiji.haas.JobManager.JobSynchronizableFile;
import cz.it4i.fiji.haas_java_client.HaaSClient;
......
haas-imagej-client/src/test/java/cz/it4i/fiji/haas/RunBenchmark.java → haas-spim-benchmark/src/test/java/cz/it4i/fiji/haas/RunBenchmark.java
+ 1
− 0
View file @ c5258a7a
......@@ -11,6 +11,7 @@ import org.slf4j.LoggerFactory;
import cz.it4i.fiji.haas_java_client.JobState;
import cz.it4i.fiji.haas_java_client.SynchronizableFileType;
import cz.it4i.fiji.haas_spim_benchmark.core.BenchmarkJobManager;
import net.imagej.updater.util.Progress;
public class RunBenchmark {
......
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