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FIJI
hpc-workflow-manager
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!25
fix: iss1137
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fix: iss1137
iss1137
into
snakemakeProcessor
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Jan Kožusznik
requested to merge
iss1137
into
snakemakeProcessor
6 years ago
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ae2baa31
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ae2baa31
code: address MR comments
· ae2baa31
Jan Kožusznik
authored
6 years ago
remove useless variable and format
haas-spim-benchmark/src/main/java/cz/it4i/fiji/haas_spim_benchmark/core/SnakemakeOutputHelper.java
+
4
−
5
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@@ -64,17 +64,16 @@ class SnakemakeOutputHelper {
final
String
OUTPUT_PARSING_VALUE_ERROR
=
"ValueError"
;
processedOutputLength
=
-
1
;
int
readJobCountIndex
=
-
1
;
boolean
found
=
false
;
final
String
output
=
getSnakemakeOutput
();
// Found last job count definition
Pattern
p
=
Pattern
.
compile
(
OUTPUT_PARSING_JOB_COUNTS
+
"|"
+
NOTHING_TO_BE_DONE
);
Matcher
m
=
p
.
matcher
(
output
);
final
Pattern
p
=
Pattern
.
compile
(
OUTPUT_PARSING_JOB_COUNTS
+
"|"
+
NOTHING_TO_BE_DONE
);
final
Matcher
m
=
p
.
matcher
(
output
);
while
(
m
.
find
())
{
readJobCountIndex
=
m
.
start
();
processedOutputLength
=
m
.
start
();
found
=
true
;
processedOutputLength
=
readJobCountIndex
;
}
// If no job count definition has been found, search through the output and
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