Commits · 05df08dc96b78faab94b02b98704e32dbe5effb1 · FIJI / snakemake-workflows

May 21, 2016
- Merge pull request #27 from mpicbg-scicomp/master · 05df08dc
  Christopher Schmied authored 8 years ago
  
  Fixes bug with temporary files
  05df08dc
May 11, 2016
- removed all temporaries as this breaks rule.xxx.output use for input files · bc58f747
  steinbac authored 8 years ago
  
  bc58f747
Apr 28, 2016
- Merge pull request #19 from schmiedc/master · b61de994
  Peter Steinbach authored 8 years ago
  
  Updates to config.yaml
  b61de994
Apr 27, 2016
- fixed typo in documentation of config.yaml · b8258e87
  Christopher Schmied authored 8 years ago
  
  b8258e87
- Merge pull request #18 from schmiedc/master · 63592a6c
  Peter Steinbach authored 8 years ago
  
  Fixed bug in reg_interest_points_channel thanks!
  63592a6c
- Fixed typo of config.yaml · 80889121
  Christopher Schmied authored 8 years ago
  
  80889121
- Fixed typo in documentation · 924ccbd3
  Christopher Schmied authored 8 years ago
  
  924ccbd3
- Fixed duplicate name in config.yaml · 4cea9448
  Christopher Schmied authored 8 years ago
  
  4cea9448
- Fixed bug in reg_interest_points_channel · bcf3451a
  Christopher Schmied authored 8 years ago
  
  Dual Channel for Channel does not contain the beads needs to be: '"[(DO NOT register this channel)],beads"'
  bcf3451a
Mar 11, 2016
- Merge pull request #17 from schmiedc/master · edb122a6
  Peter Steinbach authored 9 years ago
  
  Cleaned up
  edb122a6
- Update README.md · 99eea9c5
  schmiedc authored 9 years ago
  
  99eea9c5
Mar 07, 2016
- Corrected error in bounding box of the example config.yaml · 1b7ab5bf
  Christopher Schmied authored 9 years ago
  
  1b7ab5bf
- Revert "Merge" · 9c808185
  schmiedc authored 9 years ago
  
  9c808185
- Merge pull request #26 from mpicbg-scicomp/master · 294898ef
  schmiedc authored 9 years ago
  
  Merge
  294898ef
- Merge branch 'master' of https://github.com/schmiedc/snakemake-workflows into 20160307-cschmied-pr · c025efa2
  Peter Steinbach authored 9 years ago
  
  c025efa2
- Merge pull request #15 from schmiedc/update_define · 1f02e7e0
  Peter Steinbach authored 9 years ago
  
  Update define
  1f02e7e0
- corrected first .czi name in example config.yaml · 8f7ab8fb
  Christopher Schmied authored 9 years ago
  
  8f7ab8fb
Jan 17, 2016

Christopher Schmied authored 9 years ago

Was not reading out the correct matrix for multichannel transformation.
Now takes the matrix and performs the proper transformation on the dataset.

9764eff7

Jan 08, 2016
- Fixed external transformation in Snakefile · ca5636b0
  Christopher Schmied authored 9 years ago
  
  ca5636b0
- Fixed external transformation switch in Snakefile · 432d831f
  Christopher Schmied authored 9 years ago
  
  432d831f
Dec 10, 2015
- Modifications for resaving single view dataset into hdf5 · 7fb7585e
  Christopher Schmied authored 9 years ago
  
  7fb7585e
- Updated define_czi to new Fiji version · 0b1b2e1c
  Christopher Schmied authored 9 years ago
  
  0b1b2e1c
- Added option for CellImg imglib2 container · 17d432dc
  Christopher Schmied authored 9 years ago
  
  17d432dc
Nov 26, 2015
- Fixed another typo this time in Snakefile duplicate_transformations · 0046a5f4
  Christopher Schmied authored 9 years ago
  
  0046a5f4
- Fixed typo in config.yaml for duplicate_transformations · 612786c6
  Christopher Schmied authored 9 years ago
  
  612786c6
Oct 30, 2015
- Fixed typo in duplicate_transformations.bsh · 607bd234
  Christopher Schmied authored 9 years ago
  
  607bd234
Oct 20, 2015
- Added ometiff resave modified czi resave for alignment · bc746851
  Christopher Schmied authored 9 years ago
  
  Tested and works
  bc746851
Aug 11, 2015
- Merge branch 'master' of github.com:schmiedc/snakemake-workflows · 9af8e163
  Christopher Schmied authored 9 years ago
  
  9af8e163
- Removed thread setting from timelapse registration · a7303ec3
  Christopher Schmied authored 9 years ago
  
  a7303ec3
Aug 05, 2015
- Merge pull request #14 from schmiedc/master · 1daeff02
  Peter Steinbach authored 9 years ago
  
  Cluster tools
  1daeff02
- Update README.md · d6fba1cf
  schmiedc authored 9 years ago
  
  d6fba1cf
- Merge pull request #13 from schmiedc/output_calib · 6049ca36
  Peter Steinbach authored 9 years ago
  
  Output calib - Tested and works
  6049ca36
Aug 04, 2015
- fixed typos in documentation · d08080ba
  Christopher Schmied authored 9 years ago
  
  d08080ba
- Updated config.yaml file · 3e1a52ee
  Christopher Schmied authored 9 years ago
  
  3e1a52ee
Aug 02, 2015
- Small adjustment for config yaml and master preprocessing · b0c35073
  Christopher Schmied authored 9 years ago
  
  b0c35073
Aug 01, 2015
- Merge pull request #25 from schmiedc/tools · d086e908
  schmiedc authored 9 years ago
  
  Tools
  d086e908
Jul 29, 2015
- Added xvfb and cuda for deconvolution · 8aa2b666
  Christopher Schmied authored 9 years ago
  
  8aa2b666
Jul 28, 2015
- Added Fiji resources settings · a17d52d2
  Christopher Schmied authored 9 years ago
  
  a17d52d2
Jul 24, 2015
- Merge pull request #24 from schmiedc/output_calib · 5c2e8d8c
  schmiedc authored 9 years ago
  
  Output calib
  5c2e8d8c
Jul 20, 2015
- Fixed bug in rule deconvolution · a71874c8
  Christopher Schmied authored 9 years ago
  
  a71874c8