Commits · 51e1ce9d5d849979c45cfbe1eb5ed2ad47046d0d · FIJI / snakemake-workflows

Jun 10, 2016
- removed obsolete prefix in command_tag for csv file · 51e1ce9d
  steinbac authored 8 years ago
  
  51e1ce9d
- h264 scan running · 86f202c7
  steinbac authored 8 years ago
  
  86f202c7
Jun 09, 2016
- started ffmpeg-scan makefile and config · 8f30c976
  steinbac authored 8 years ago
  
  8f30c976
Jun 08, 2016
- updated slurm commands and removed redundant task requests · c40abe8c
  steinbac authored 8 years ago
  
  c40abe8c
Jun 06, 2016
- renamed benchmarks · 730a5f13
  Peter Steinbach authored 8 years ago
  
  730a5f13
- added readme markdown for cluster_tools · 81c62890
  Peter Steinbach authored 8 years ago
  
  81c62890
- removed xvfb-run due to licensing issue · 5a69988d
  steinbac authored 8 years ago
  
  5a69988d
Jun 03, 2016
- Merge branch 'benchmark-example' into adapt_to_slurm · 3d6baa3a
  steinbac authored 8 years ago
  
  3d6baa3a
- minor updates to config file, so that it is less dependent on absolute paths · f9506a50
  steinbac authored 8 years ago
  
  f9506a50
- benchmarks are running now and producing sounds results · 53d4c9da
  steinbac authored 8 years ago
  
  53d4c9da
May 19, 2016
- ready to rock for cluster submission · 92873116
  steinbac authored 8 years ago
  
  92873116
May 18, 2016
- added new directory with benchmark Snakefile · 671bb6c9
  steinbac authored 8 years ago
  
  671bb6c9
- playing around with xvfb-run showed that xvfb-run yields a bug that makes subjobs fail · 9e3c3adf
  steinbac authored 8 years ago
  
  9e3c3adf
May 11, 2016
- removed all temporaries as this breaks rule.xxx.output use for input files · bc58f747
  steinbac authored 8 years ago
  
  bc58f747
Apr 28, 2016
- Merge pull request #19 from schmiedc/master · b61de994
  Peter Steinbach authored 8 years ago
  
  Updates to config.yaml
  b61de994
Apr 27, 2016
- fixed typo in documentation of config.yaml · b8258e87
  Christopher Schmied authored 8 years ago
  
  b8258e87
- Merge pull request #18 from schmiedc/master · 63592a6c
  Peter Steinbach authored 8 years ago
  
  Fixed bug in reg_interest_points_channel thanks!
  63592a6c
- Fixed typo of config.yaml · 80889121
  Christopher Schmied authored 8 years ago
  
  80889121
- Fixed typo in documentation · 924ccbd3
  Christopher Schmied authored 8 years ago
  
  924ccbd3
- Fixed duplicate name in config.yaml · 4cea9448
  Christopher Schmied authored 8 years ago
  
  4cea9448
- Fixed bug in reg_interest_points_channel · bcf3451a
  Christopher Schmied authored 8 years ago
  
  Dual Channel for Channel does not contain the beads needs to be: '"[(DO NOT register this channel)],beads"'
  bcf3451a
Mar 11, 2016
- Merge pull request #17 from schmiedc/master · edb122a6
  Peter Steinbach authored 9 years ago
  
  Cleaned up
  edb122a6
- Update README.md · 99eea9c5
  schmiedc authored 9 years ago
  
  99eea9c5
Mar 07, 2016
- Corrected error in bounding box of the example config.yaml · 1b7ab5bf
  Christopher Schmied authored 9 years ago
  
  1b7ab5bf
- Revert "Merge" · 9c808185
  schmiedc authored 9 years ago
  
  9c808185
- Merge pull request #26 from mpicbg-scicomp/master · 294898ef
  schmiedc authored 9 years ago
  
  Merge
  294898ef
- Merge branch 'master' of https://github.com/schmiedc/snakemake-workflows into 20160307-cschmied-pr · c025efa2
  Peter Steinbach authored 9 years ago
  
  c025efa2
- Merge pull request #15 from schmiedc/update_define · 1f02e7e0
  Peter Steinbach authored 9 years ago
  
  Update define
  1f02e7e0
- corrected first .czi name in example config.yaml · 8f7ab8fb
  Christopher Schmied authored 9 years ago
  
  8f7ab8fb
Jan 17, 2016

Christopher Schmied authored 9 years ago

Was not reading out the correct matrix for multichannel transformation.
Now takes the matrix and performs the proper transformation on the dataset.

9764eff7

Jan 08, 2016
- Fixed external transformation in Snakefile · ca5636b0
  Christopher Schmied authored 9 years ago
  
  ca5636b0
- Fixed external transformation switch in Snakefile · 432d831f
  Christopher Schmied authored 9 years ago
  
  432d831f
Dec 10, 2015
- Modifications for resaving single view dataset into hdf5 · 7fb7585e
  Christopher Schmied authored 9 years ago
  
  7fb7585e
- Updated define_czi to new Fiji version · 0b1b2e1c
  Christopher Schmied authored 9 years ago
  
  0b1b2e1c
- Added option for CellImg imglib2 container · 17d432dc
  Christopher Schmied authored 9 years ago
  
  17d432dc
Nov 26, 2015
- Fixed another typo this time in Snakefile duplicate_transformations · 0046a5f4
  Christopher Schmied authored 9 years ago
  
  0046a5f4
- Fixed typo in config.yaml for duplicate_transformations · 612786c6
  Christopher Schmied authored 9 years ago
  
  612786c6
Oct 30, 2015
- Fixed typo in duplicate_transformations.bsh · 607bd234
  Christopher Schmied authored 9 years ago
  
  607bd234
Oct 20, 2015
- Added ometiff resave modified czi resave for alignment · bc746851
  Christopher Schmied authored 9 years ago
  
  Tested and works
  bc746851
Aug 11, 2015
- Merge branch 'master' of github.com:schmiedc/snakemake-workflows · 9af8e163
  Christopher Schmied authored 9 years ago
  
  9af8e163