Commits · master · FIJI / snakemake-workflows

Oct 19, 2018
- Update config.yaml · 71336555
  Jan Kožusznik authored 6 years ago
  
  71336555
- Support for fix bioformats · 4966a5d6
  Jan Kožusznik authored 6 years ago
  
  4966a5d6
May 23, 2018
- Merge pull request #31 from psteinb/join_paths_instead_of_concat · b95e94d9
  Peter Steinbach authored 6 years ago
  
  Join paths instead of concat
  Unverified
  
  b95e94d9
- using os.path.join for stitching together paths · 52ae8145
  Peter Steinbach authored 6 years ago
  
  52ae8145
Jan 23, 2018
- fixed missing file name flag · 9ffa5e1e
  Peter Steinbach authored 7 years ago
  
  9ffa5e1e
- formatting revisited, added partition flags · ea6d5cfd
  Peter Steinbach authored 7 years ago
  
  ea6d5cfd
- added the os.path.join function · af62f459
  Peter Steinbach authored 7 years ago
  
  af62f459
- Merge pull request #27 from psteinb/update_from_cschmied · 565f666a
  Peter Steinbach authored 7 years ago
  
  Update from cschmied
  Unverified
  
  565f666a
- whitespace clean-up · d7bf32f0
  Peter Steinbach authored 7 years ago
  
  d7bf32f0
- Merge branch 'master' of github.com:schmiedc/snakemake-workflows into update_from_cschmied · 2c31339f
  Peter Steinbach authored 7 years ago
  
  2c31339f
Aug 25, 2016
- Fixed Illumination side 0,1 bug · 38135369
  Christopher Schmied authored 8 years ago
  
  38135369
- Modified luxendo resave · 5e80f6d7
  Christopher Schmied authored 8 years ago
  
  5e80f6d7
Aug 22, 2016
- Added export of .h5 luxendo files to .tif · 43717264
  Christopher Schmied authored 8 years ago
  
  43717264
- Changed comment in config.yaml · 04d2e32e
  Christopher Schmied authored 8 years ago
  
  04d2e32e
Jul 15, 2016
- Merge pull request #21 from schmiedc/master · 51834f02
  Peter Steinbach authored 8 years ago
  
  Fixed bug in downsampling ... Thanks a bunch for the PR!
  51834f02
Jul 14, 2016
- Fixed bug in downsampling: missing string downsample_images · 1ee623a1
  Christopher Schmied authored 8 years ago
  
  1ee623a1
Jun 16, 2016
- fixed insertion of nthreads for x264, dropped default configfile · 85e7bdeb
  steinbac authored 8 years ago
  
  85e7bdeb
Jun 15, 2016
- new configfile · 2371ee60
  steinbac authored 8 years ago
  
  2371ee60
- Merge pull request #28 from mpicbg-scicomp/master · 2b4cbbb1
  Christopher Schmied authored 8 years ago
  
  Introduce new changes for running on new cluster
  2b4cbbb1
Jun 10, 2016
- h265 works as dryrun · ac1641d1
  steinbac authored 8 years ago
  
  ac1641d1
- removed obsolete prefix in command_tag for csv file · 51e1ce9d
  steinbac authored 8 years ago
  
  51e1ce9d
- h264 scan running · 86f202c7
  steinbac authored 8 years ago
  
  86f202c7
Jun 09, 2016
- started ffmpeg-scan makefile and config · 8f30c976
  steinbac authored 8 years ago
  
  8f30c976
Jun 08, 2016
- updated slurm commands and removed redundant task requests · c40abe8c
  steinbac authored 8 years ago
  
  c40abe8c
Jun 06, 2016
- renamed benchmarks · 730a5f13
  Peter Steinbach authored 8 years ago
  
  730a5f13
- added readme markdown for cluster_tools · 81c62890
  Peter Steinbach authored 8 years ago
  
  81c62890
- removed xvfb-run due to licensing issue · 5a69988d
  steinbac authored 8 years ago
  
  5a69988d
Jun 03, 2016
- Merge branch 'benchmark-example' into adapt_to_slurm · 3d6baa3a
  steinbac authored 8 years ago
  
  3d6baa3a
- minor updates to config file, so that it is less dependent on absolute paths · f9506a50
  steinbac authored 8 years ago
  
  f9506a50
- benchmarks are running now and producing sounds results · 53d4c9da
  steinbac authored 8 years ago
  
  53d4c9da
May 21, 2016
- Merge pull request #27 from mpicbg-scicomp/master · 05df08dc
  Christopher Schmied authored 8 years ago
  
  Fixes bug with temporary files
  05df08dc
May 19, 2016
- ready to rock for cluster submission · 92873116
  steinbac authored 8 years ago
  
  92873116
May 18, 2016
- added new directory with benchmark Snakefile · 671bb6c9
  steinbac authored 8 years ago
  
  671bb6c9
- playing around with xvfb-run showed that xvfb-run yields a bug that makes subjobs fail · 9e3c3adf
  steinbac authored 8 years ago
  
  9e3c3adf
May 11, 2016
- removed all temporaries as this breaks rule.xxx.output use for input files · bc58f747
  steinbac authored 8 years ago
  
  bc58f747
Apr 28, 2016
- Merge pull request #19 from schmiedc/master · b61de994
  Peter Steinbach authored 8 years ago
  
  Updates to config.yaml
  b61de994
Apr 27, 2016
- fixed typo in documentation of config.yaml · b8258e87
  Christopher Schmied authored 8 years ago
  
  b8258e87
- Merge pull request #18 from schmiedc/master · 63592a6c
  Peter Steinbach authored 8 years ago
  
  Fixed bug in reg_interest_points_channel thanks!
  63592a6c
- Fixed typo of config.yaml · 80889121
  Christopher Schmied authored 8 years ago
  
  80889121
- Fixed typo in documentation · 924ccbd3
  Christopher Schmied authored 8 years ago
  
  924ccbd3