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FIJI
snakemake-workflows
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53d4c9da4268f5a5a67cd37033d40a521a81d624
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ffmpeg_scans
fix_for_snakemake_lt_342
master
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Update config.yaml
master
master
Support for fix bioformats
Merge pull request #31 from psteinb/join_paths_instead_of_concat
using os.path.join for stitching together paths
fixed missing file name flag
formatting revisited, added partition flags
added the os.path.join function
Merge pull request #27 from psteinb/update_from_cschmied
whitespace clean-up
Merge branch 'master' of github.com:schmiedc/snakemake-workflows into update_from_cschmied
Fixed Illumination side 0,1 bug
Modified luxendo resave
Added export of .h5 luxendo files to .tif
Changed comment in config.yaml
Merge pull request #21 from schmiedc/master
Fixed bug in downsampling: missing string downsample_images
fixed insertion of nthreads for x264, dropped default configfile
new configfile
Merge pull request #28 from mpicbg-scicomp/master
h265 works as dryrun
ffmpeg_scans
ffmpeg_scans
removed obsolete prefix in command_tag for csv file
h264 scan running
started ffmpeg-scan makefile and config
updated slurm commands and removed redundant task requests
renamed benchmarks
added readme markdown for cluster_tools
removed xvfb-run due to licensing issue
Merge branch 'benchmark-example' into adapt_to_slurm
minor updates to config file, so that it is less dependent on absolute paths
benchmarks are running now and producing sounds results
Merge pull request #27 from mpicbg-scicomp/master
ready to rock for cluster submission
added new directory with benchmark Snakefile
playing around with xvfb-run showed that xvfb-run yields a bug that makes subjobs fail
removed all temporaries as this breaks rule.xxx.output use for input files
fix_for_snakema…
fix_for_snakemake_lt_342
Merge pull request #19 from schmiedc/master
fixed typo in documentation of config.yaml
Merge pull request #18 from schmiedc/master
Fixed typo of config.yaml
Fixed typo in documentation
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