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    site_name: IT4Innovations Documentation
    theme_dir: 'material'
    docs_dir: docs.it4i
    
    site_favicon: img/favicon.ico
    
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    extra_css: 
       - src/css.css
    
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    # Repository
    
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    repo_name: sccs/docs.it4i.cz
    
    repo_url: https://code.it4i.cz/sccs/docs.it4i.cz
    
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    # Copyright
    copyright: Copyright (c) 2017 IT4Innovations__VERSION__
    
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    pages:
      - Home: index.md
      - General:
    
        - Applying for Resources: general/applying-for-resources.md
        - Obtaining Login Credentials: general/obtaining-login-credentials/obtaining-login-credentials.md
        - Certificates FAQ: general/obtaining-login-credentials/certificates-faq.md
    
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        - Accessing the Clusters:
    
          - OpenSSH Keys (UN*X): general/accessing-the-clusters/shell-access-and-data-transfer/ssh-keys.md
          - PuTTY (Windows): general/accessing-the-clusters/shell-access-and-data-transfer/putty.md
          - X Window System: general/accessing-the-clusters/graphical-user-interface/x-window-system.md
          - VNC: general/accessing-the-clusters/graphical-user-interface/vnc.md
          - VPN Access: general/accessing-the-clusters/vpn-access.md
    
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      - Salomon Cluster:
        - Introduction: salomon/introduction.md
        - Hardware Overview: salomon/hardware-overview.md
        - Accessing the Cluster: salomon/shell-and-data-access.md
    
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        - Environment and Modules: salomon/environment-and-modules.md
        - Resource Allocation and Job Execution:
          - Resources Allocation Policy: salomon/resources-allocation-policy.md
          - Job Scheduling: salomon/job-priority.md
          - Job Submission and Execution: salomon/job-submission-and-execution.md
          - Capacity Computing: salomon/capacity-computing.md
    
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        - Compute Nodes: salomon/compute-nodes.md
    
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        - Network:
          - InfiniBand Network: salomon/network.md
    
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          - IB Single-Plane Topology: salomon/ib-single-plane-topology.md
    
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          - 7D Enhanced Hypercube: salomon/7d-enhanced-hypercube.md
    
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        - Storage: salomon/storage.md
    
        - PRACE User Support: salomon/prace.md
      - Anselm Cluster:
    
        - Introduction: anselm/introduction.md
        - Hardware Overview: anselm/hardware-overview.md
        - Accessing the Cluster: anselm/shell-and-data-access.md
        - Environment and Modules: anselm/environment-and-modules.md
    
        - Resource Allocation and Job Execution:
    
          - Resource Allocation Policy: anselm/resources-allocation-policy.md
          - Job Priority: anselm/job-priority.md
          - Job Submission and Execution: anselm/job-submission-and-execution.md
          - Capacity Computing: anselm/capacity-computing.md
        - Compute Nodes: anselm/compute-nodes.md
        - Storage: anselm/storage.md
        - Network: anselm/network.md
        - Remote Visualization: anselm/remote-visualization.md
        - PRACE User Support: anselm/prace.md
    
      - 'Software':
    
        - Lmod Environment: software/lmod.md
    
        - Modules Matrix: modules-matrix.md
    
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        - Singularity Container: software/singularity.md  
    
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        - EasyBuild: software/easybuild.md
    
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        - Spack: software/spack.md
    
        - Salomon Software:
    
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          - Available Modules: modules-salomon.md
          - Available Modules on UV: modules-salomon-uv.md
    
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          - 'Machine learning':
    
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            - Introduction: salomon/software/machine-learning/introduction.md
            - TensorFlow: salomon/software/machine-learning/tensorflow.md
    
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          - 'ANSYS':
            - Introduction: salomon/software/ansys/ansys.md
            - ANSYS CFX: salomon/software/ansys/ansys-cfx.md
            - ANSYS Fluent: salomon/software/ansys/ansys-fluent.md
            - ANSYS LS-DYNA: salomon/software/ansys/ansys-ls-dyna.md
            - ANSYS MAPDL: salomon/software/ansys/ansys-mechanical-apdl.md
            - Workbench: salomon/software/ansys/workbench.md
            - Setting License Preferences: salomon/software/ansys/licensing.md
            - Licensing and Available Versions: salomon/software/ansys/setting-license-preferences.md
          - 'Bioinformatics':
            - Bioinformatics Applications: software/bioinformatics.md
          - 'Chemistry':
            - Molpro: salomon/software/chemistry/molpro.md
            - NWChem: salomon/software/chemistry/nwchem.md
            - Phono3py: salomon/software/chemistry/phono3py.md
            - ORCA: software/orca.md
          - Compilers: salomon/software/compilers.md
          - 'COMSOL':
            - COMSOL: salomon/software/comsol/comsol-multiphysics.md
            - Licensing and Available Versions: salomon/software/comsol/licensing-and-available-versions.md
          - 'Debuggers':
            - Introduction: salomon/software/debuggers/Introduction.md
            - Aislinn: salomon/software/debuggers/aislinn.md
            - Allinea Forge (DDT,MAP): salomon/software/debuggers/allinea-ddt.md
            - Allinea Performance Reports: salomon/software/debuggers/allinea-performance-reports.md
            - Intel VTune Amplifier XE: salomon/software/debuggers/intel-vtune-amplifier.md
            - Total View: salomon/software/debuggers/total-view.md
            - Valgrind: salomon/software/debuggers/valgrind.md
            - Vampir: salomon/software/debuggers/vampir.md
          - 'Intel Suite':
            - Introduction: salomon/software/intel-suite/intel-parallel-studio-introduction.md
            - Intel Advisor: salomon/software/intel-suite/intel-advisor.md
            - Intel Compilers: salomon/software/intel-suite/intel-compilers.md
            - Intel Debugger: salomon/software/intel-suite/intel-debugger.md
            - Intel IPP: salomon/software/intel-suite/intel-integrated-performance-primitives.md
            - Intel Inspector: salomon/software/intel-suite/intel-inspector.md
            - Intel MKL: salomon/software/intel-suite/intel-mkl.md
            - Intel TBB: salomon/software/intel-suite/intel-tbb.md
            - Intel Trace Analyzer and Collector: salomon/software/intel-suite/intel-trace-analyzer-and-collector.md
          - Intel Xeon Phi: salomon/software/intel-xeon-phi.md
          - Java: salomon/software/java.md
          - 'MPI':
            - Introduction: salomon/software/mpi/mpi.md
            - MPI4Py (MPI for Python): salomon/software/mpi/mpi4py-mpi-for-python.md
            - Running Open MPI: salomon/software/mpi/Running_OpenMPI.md
          - 'Numerical Languages':
            - Introduction: salomon/software/numerical-languages/introduction.md
            - Matlab: salomon/software/numerical-languages/matlab.md
            - Octave: salomon/software/numerical-languages/octave.md
    
            - R: salomon/software/numerical-languages/r.md    
            - OpenCoarrays: salomon/software/numerical-languages/opencoarrays.md
    
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          - Operating System: salomon/software/operating-system.md
    
          - ParaView: salomon/software/paraview.md
    
        - Anselm Software:
    
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          - Available Modules: modules-anselm.md
    
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          - 'Machine learning':
    
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            - Introduction: anselm/software/machine-learning/introduction.md
            - TensorFlow: anselm/software/machine-learning/tensorflow.md
    
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          - 'ANSYS':
    
            - Introduction: anselm/software/ansys/ansys.md
            - ANSYS CFX: anselm/software/ansys/ansys-cfx.md
            - ANSYS Fluent: anselm/software/ansys/ansys-fluent.md
            - ANSYS LS-DYNA: anselm/software/ansys/ansys-ls-dyna.md
            - ANSYS MAPDL: anselm/software/ansys/ansys-mechanical-apdl.md
            - LS-DYNA: anselm/software/ansys/ls-dyna.md
    
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          - 'Bioinformatics':
    
            - Bioinformatics Applications: software/bioinformatics.md
    
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          - 'Debuggers':
    
            - Allinea Forge (DDT,MAP): anselm/software/debuggers/allinea-ddt.md
            - Allinea Performance Reports: anselm/software/debuggers/allinea-performance-reports.md
            - CUBE: anselm/software/debuggers/cube.md
            - Intel Performance Counter Monitor: anselm/software/debuggers/intel-performance-counter-monitor.md
            - Intel VTune Amplifier: anselm/software/debuggers/intel-vtune-amplifier.md
            - PAPI: anselm/software/debuggers/papi.md
            - Scalasca: anselm/software/debuggers/scalasca.md
            - Score-P: anselm/software/debuggers/score-p.md
            - Total View: anselm/software/debuggers/total-view.md
            - VNC: anselm/software/debuggers/debuggers.md
            - Valgrind: anselm/software/debuggers/valgrind.md
            - Vampir: anselm/software/debuggers/vampir.md
    
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          - 'Chemistry':
    
            - Molpro: anselm/software/chemistry/molpro.md
            - NWChem: anselm/software/chemistry/nwchem.md
    
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            - ORCA: software/orca.md
    
          - COMSOL: anselm/software/comsol-multiphysics.md
          - Compilers: anselm/software/compilers.md
          - GPI-2: anselm/software/gpi2.md
    
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          - 'Intel Suite':
    
            - Introduction: anselm/software/intel-suite/introduction.md
            - Intel Compilers: anselm/software/intel-suite/intel-compilers.md
            - Intel Debugger: anselm/software/intel-suite/intel-debugger.md
            - Intel IPP: anselm/software/intel-suite/intel-integrated-performance-primitives.md
            - Intel MKL: anselm/software/intel-suite/intel-mkl.md
            - Intel TBB: anselm/software/intel-suite/intel-tbb.md
          - Intel Xeon Phi: anselm/software/intel-xeon-phi.md
          - ISV Licenses: anselm/software/isv_licenses.md
          - Java: anselm/software/java.md
    
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          - 'MPI':
    
            - Introduction: anselm/software/mpi/mpi.md
            - MPI4Py (MPI for Python): anselm/software/mpi/mpi4py-mpi-for-python.md
            - Running Open MPI: anselm/software/mpi/Running_OpenMPI.md
            - Running MPICH2: anselm/software/mpi/running-mpich2.md
    
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          - 'Numerical Languages':
    
            - Introduction: anselm/software/numerical-languages/introduction.md
            - Matlab 2013-2014: anselm/software/numerical-languages/matlab_1314.md
            - Matlab: anselm/software/numerical-languages/matlab.md
            - Octave: anselm/software/numerical-languages/octave.md
            - R: anselm/software/numerical-languages/r.md
    
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          - 'Numerical Libraries':
    
            - FFTW: anselm/software/numerical-libraries/fftw.md
            - GSL: anselm/software/numerical-libraries/gsl.md
            - HDF5: anselm/software/numerical-libraries/hdf5.md
            - Intel Numerical Libraries: anselm/software/numerical-libraries/intel-numerical-libraries.md
            - MAGMA for Intel Xeon Phi: anselm/software/numerical-libraries/magma-for-intel-xeon-phi.md
            - PETSc: anselm/software/numerical-libraries/petsc.md
            - Trilinos: anselm/software/numerical-libraries/trilinos.md
          - NVIDIA CUDA: anselm/software/nvidia-cuda.md
    
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          - 'Omics Master':
    
            - Diagnostic Component (TEAM): anselm/software/omics-master/diagnostic-component-team.md
            - Priorization Component (BiERApp): anselm/software/omics-master/priorization-component-bierapp.md
            - Overview: anselm/software/omics-master/overview.md
          - OpenFOAM: anselm/software/openfoam.md
          - Operating System: anselm/software/operating-system.md
          - ParaView: anselm/software/paraview.md
    
          - Virtualization: anselm/software/virtualization.md
    
      - PBS Pro Documentation: pbspro.md
    
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    extra:
    
      repo_icon: gitlab
    
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      palette:
    
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        primary: 'grey'
    
        accent: 'yellow'
    
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      font:
    
        text: 'Ubuntu'
        code: 'Ubuntu Mono'
    
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      i18n:
        prev: 'Previous'
        next: 'Next'
    
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      social:
        - type: 'gitlab'
    
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          link: 'https://code.it4i.cz/sccs/docs.it4i.cz'
    
        - type: globe
          link: https://www.it4i.cz
    
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    markdown_extensions:
    
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      - codehilite
    
      - markdown.extensions.admonition:
      - pymdownx.arithmatex:
      - markdown.extensions.toc:
    
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          slugify: !!python/name:pymdownx.slugs.uslugify
          permalink: 
    
      - pymdownx.snippets:
          base_path: docs.it4i/snippets
    
    
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