Update docs.it4i/dice.md, docs.it4i/img/eudat.jpg, docs.it4i/img/crypto.jpg,...

Update docs.it4i/dice.md, docs.it4i/img/eudat.jpg, docs.it4i/img/crypto.jpg, docs.it4i/img/B2ACCESS.jpg, docs.it4i/img/eudat_request.jpg

docs.it4i/dice.md

@@ -18,10 +18,14 @@ The integrated Rule-Oriented Data System (iRODS) is an open source data manageme
 
 We have to be sure about your identity, this will be done throught this steps:
 
-- at the first, fill this request for eudat [https://www.eudat.eu/contact-support-request?Service=B2SAFE][h]
-- sign to MyAccessId [https://ds.myaccessid.org/][g] , after that, please create account at B2Access [https://b2access.eudat.eu/][d]
-- after successfull login to B2Access, please sign in to our AAI at : [https://aai.it4i.cz/realms/IT4i_AAI/account/#/][f] throught your B2Access account. You can set new password. this new password will work for cyberduck and icommands.
-- finally, contact our support@it4i.cz by crypted mail, we will create account at our iRods server and send you crypted mail.
+- at the first, fill this request for [EUDAT][h]
+![](img/eudat_request.jpg)
+- sign to [MyAccessID][g] , after that, please create account at [B2ACCESS][d] , pages requests valid personal certificate (e.g from GEANT)
+![](img/B2ACCESS.jpg)
+![](img/crypto.jpg)
+![](img/eudat.jpg)
+- after successfull login to B2Access, please sign in to our [AAI][f] throught your B2Access account. You can set new password. this new password will work for cyberduck and icommands.
+- finally, contact our support@it4i.cz by mail, we will create your account at our iRODS server.
 
 ![](img/aai.jpg)
 ![](img/aai2.jpg)
@@ -39,49 +43,65 @@ We have to be sure about your identity, this will be done throught this steps:
 ssh some_user@karolina.it4i.cz
 ml irodsfs
 ```
-- config files for irodsfs and icommands will be loaded 
+
+- config files for irodsfs and icommands will be loaded
 - now you can choose between Fuse client or iCommands
 
 ***Fuse***
 
 ```console
-$ ml irodsfs
+ssh some_user@karolina.it4i.cz
+[some_use@login4.karolina ~]$ ml irodsfs
 
-The following have been reloaded with a version change:
-  1) iRODS/0.7.3 => iRODS/0.7.6
+irodsfs configuration file has been created at /home/dvo0012/.irods/config.yml
+iRODS environment file has been created at /home/dvo0012/.irods/irods_environment.json
 
-iRODS configuration file has been created at /home/some_user/.config/iRODS/config.yml.
+to start irodsfs, run:          irodsfs -config ~/.irods/config.yml ~/IRODS
+to start iCommands, run:        iinit
+
+For more information, see https://docs.it4i.cz/dice/
+```
 
-To mount your iRODS repository at ~/IRODS, run
-        irodsfs -config ~/.config/iRODS/config.yml ~/IRODS
+To mount your iRODS collection to ~/IRODS, run
+```console
+[some_user@login4.karolina ~]$ irodsfs -config ~/.irods/config.yml ~/IRODS
+time="2022-08-04 08:54:13.222836" level=info msg="Logging to /tmp/irodsfs_cblmq5ab1lsaj31vrv20.log" function=processArguments package=main
+Password:
+time="2022-08-04 08:54:18.698811" level=info msg="Found FUSE Device. Starting iRODS FUSE Lite." function=parentMain package=main
+time="2022-08-04 08:54:18.699080" level=info msg="Running the process in the background mode" function=parentRun package=main
+time="2022-08-04 08:54:18.699544" level=info msg="Process id = 27145" function=parentRun package=main
+time="2022-08-04 08:54:18.699572" level=info msg="Sending configuration data" function=parentRun package=main
+time="2022-08-04 08:54:18.699730" level=info msg="Successfully sent configuration data to background process" function=parentRun package=main
+time="2022-08-04 08:54:18.922490" level=info msg="Successfully started background process" function=parentRun package=main
+```
 
 To unmount it, run
-        fusermount -u ~/IRODS
 
-$ irodsfs -config ~/.config/iRODS/config.yml ~/IRODS
-time="2022-08-01 12:44:22.980139" level=info msg="Logging to /tmp/irodsfs_cbjqt1ib1ls3g1gtnnog.log" function=processArguments package=main
-Password:
-time="2022-08-01 12:44:27.319063" level=info msg="Found FUSE Device. Starting iRODS FUSE Lite." function=parentMain package=main
-time="2022-08-01 12:44:27.319319" level=info msg="Running the process in the background mode" function=parentRun package=main
-time="2022-08-01 12:44:27.319721" level=info msg="Process id = 64406" function=parentRun package=main
-time="2022-08-01 12:44:27.319752" level=info msg="Sending configuration data" function=parentRun package=main
-time="2022-08-01 12:44:27.319909" level=info msg="Successfully sent configuration data to background process" function=parentRun package=main
-time="2022-08-01 12:44:27.555090" level=info msg="Successfully started background process" function=parentRun package=main
+```console
+fusermount -u ~/IRODS
 ```
 
 you can work with fuse as an ordinary directory  ( ls, cd, cp, mv etc )
 
-***iCommands***  
+***iCommands***
 
 ```console
-ml irodsfs
-iinit
+ssh some_user@karolina.it4i.cz
+[some_use@login4.karolina ~]$ ml irodsfs
+irodsfs configuration file has been created at /home/dvo0012/.irods/config.yml.
+      to start irods fs run: irodsfs -config ~/.irods/config.yml ~/IRODS
+
+iCommands environment file has been created at /home/$USER/.irods/irods_environment.json.
+      to start iCommands run: iinit
+
+[some_use@login4.karolina ~]$ iinit
 Enter your current PAM password:
 ```
+
 - put you password you set in keycloak
 
 ```console
-ils
+[some_use@login4.karolina ~]$ ils
 /IT4I/home/some_user:
   test.1
   test.2
@@ -128,7 +148,7 @@ mkdir ~/IRODS
 settings:
 
 ```console
-vim ~/config.yml
+[some_user@local_pc ~]$ vim ~/.rods/config.yml
 ```
 
 ```console
@@ -154,7 +174,7 @@ path_mappings:
 ***How to start - mount your collection:***
 
 ```console
-./irodsfs -config ~/config.yml ~/IRODS
+[some_user@local_pc ~]$ ./irodsfs -config ~/.irods/config.yml ~/IRODS
 time="2022-07-29 09:51:11.720831" level=info msg="Logging to /tmp/irodsfs_cbhp2rucso0ef0s7dtl0.log" function=processArguments package=main
 Password:
 
@@ -169,13 +189,13 @@ time="2022-07-29 09:51:18.008166" level=info msg="Successfully started backgroun
 ***How to put your data to iRODS***
 
 ```console
-cp test1G.txt ~/IRODS
+[some_use@local_pc ~]$ cp test1G.txt ~/IRODS
 ```
 
 It works as ordinary filesystem
 
 ```console
-ls -la ~/IRODS
+[some_user@local_pc ~]$ ls -la ~/IRODS
 total 0
 -rwx------ 1 some_user some_user 1073741824 Nov  4  2021 test1G.txt
 ```
@@ -183,7 +203,7 @@ total 0
 ***How to stop - unmout your collection:***
 
 ```console
-fusermount -u ~/IRODS
+[some_user@local_pc ~]$ fusermount -u ~/IRODS
 ```
 
 #### iCommands
@@ -198,15 +218,15 @@ sudo rpm --import https://packages.irods.org/irods-signing-key.asc
 sudo wget -qO - https://packages.irods.org/renci-irods.yum.repo | sudo tee /etc/yum.repos.d/renci-irods.yum.repo
 sudo yum install epel-release -y
 sudo yum install python-psutil python-jsonschema
-sudo yum install irods-icommands-4.2.7-1.x86_64 
+sudo yum install irods-icommands-4.2.7-1.x86_64
 mkdir ~/.irods/
 cd ~ && wget https://docs.it4i.cz/irods1.it4i.cz.crt [k]
 ```
 
-Copy&paste + edit irods_user_name
+Copy&paste + edit ***irods_user_name***
 
 ```console
-$ vim ~/.irods/irods_environment.json
+[some_user@local_pc ~]$ vim ~/.irods/irods_environment.json
 {
     "irods_host": "irods1.it4i.cz",
     "irods_port": 1247,
@@ -223,10 +243,10 @@ $ vim ~/.irods/irods_environment.json
 ```
 
 ```console
-$ pwd
+[some_user@local_pc ~]$ pwd
 /some_user/.irods
 
-$ ls -la
+[some_user@local_pc ~]$  ls -la
 total 16
 drwx------. 2 some_user some_user 136 Sep 29 08:53 .
 dr-xr-x---. 6 some_user some_user 206 Sep 29 08:53 ..
@@ -238,10 +258,10 @@ dr-xr-x---. 6 some_user some_user 206 Sep 29 08:53 ..
 **step 1:**
 
 ```console
-$ iinit
+[some_user@local_pc ~]$ iinit
 Enter your current PAM password:
 
-$ ils
+[some_user@local_pc ~]$ ils
 /IT4I/home/some_user:
   file.jpg
 ```
@@ -249,11 +269,11 @@ $ ils
 ***how to put your data to IRODS***
 
 ```console
-$ iput cesnet.crt
+[some_user@local_pc ~]$ iput cesnet.crt
 ```
 
 ```console
-$ ils
+[some_user@local_pc ~]$ ils
 /IT4I/home/some_user:
   cesnet.crt
 ```
@@ -261,7 +281,7 @@ $ ils
 ***How to download data***
 
 ```console
-$ iget cesnet.crt
+[some_user@local_pc ~]$ iget cesnet.crt
 ls -la ~
 -rw-r--r--. 1 some_user some_user 1464 Jul 20 13:44 cesnet.crt
 ```
@@ -274,7 +294,7 @@ For more commands, use the `ihelp` command.
 [c]: https://irods.org/
 [d]: https://b2access.eudat.eu/
 [f]: https://aai.it4i.cz/realms/IT4i_AAI/account/#/
-[g]: https://ds.myaccessid.org/
+[g]: https://mms.myaccessid.org/profile/
 [h]: https://www.eudat.eu/contact-support-request?Service=B2SAFE
 [i]: https://cyberduck.io/download/
 [j]: http://docs.snic.se/wiki/IRODS_iCommands_installation_on_Ubuntu_20.04#Authenticate_and_test_iRODS_iCommands_client