Merge branch 'dgx' into 'master'

Dgx

See merge request !249

docs.it4i/dgx2/accessing.md

@@ -7,32 +7,4 @@
 
 ## Shell Access
 
-The DGX-2 can be accessed by SSH protocol via login node ldgx at the address `ldgx.it4i.cz`. [VPN][1] connection is required in order to connect to ldgx.
-
-```console
- _   ___     _____ ____ ___    _        ____   ______  __    ____
-| \ | \ \   / /_ _|  _ \_ _|  / \      |  _ \ / ___\ \/ /   |___ \
-|  \| |\ \ / / | || | | | |  / _ \     | | | | |  _ \  /_____ __) |
-| |\  | \ V /  | || |_| | | / ___ \    | |_| | |_| |/  \_____/ __/
-|_| \_|  \_/  |___|____/___/_/   \_\   |____/ \____/_/\_\   |_____|
-
-                                ...running on Ubuntu 18.04 (DGX-2)
-
-[kru0052@ldgx ~]$
-```
-
-### Authentication
-
-Authentication is available by private key only.
-
-!!! info
-    Should you need access to the DGX-2 machine, request it at support@it4i.cz.
-
-### Data Transfer
-
-Data in and out of the system may be transferred by the SCP protocol.
-
-!!! warning
-    /HOME directory on ldgx is not the same as /HOME directory on dgx. /SCRATCH storage is shared between login node and DGX-2 machine.
-
-[1]: ../../general/accessing-the-clusters/vpn-access/
+The DGX-2 machine can be accessed by SSH protocol via login nodes at the address `loginX.salomon.it4i.cz`.
\ No newline at end of file

docs.it4i/dgx2/job_execution.md

@@ -27,12 +27,17 @@ When allocating computational resources for the job, specify:
 !!! note
     Right now, the DGX-2 is divided into 16 computational nodes. Every node contains 6 CPUs (3 physical cores + 3 HT cores) and 1 GPU.
 
+!!! info
+    You can access the DGX PBS scheduler by loadnig the "DGX-2" module.
+
 Submit the job using the `qsub` command:
 
 **Example for 1 GPU**
 
 ```console
-[kru0052@ldgx ~]$ qsub -q qdgx -l select=1 -l walltime=04:00:00 -I
+[kru0052@login4.salomon ~]$ ml DGX-2
+PBS 18.1.3 for DGX-2 machine
+[kru0052@login4.salomon ~]$ qsub -q qdgx -l select=1 -l walltime=04:00:00 -I
 qsub: waiting for job 257.ldgx to start
 qsub: job 257.ldgx ready
 
@@ -47,12 +52,18 @@ Thu Mar 14 07:46:01 2019
 |   0  Tesla V100-SXM3...  On   | 00000000:57:00.0 Off |                    0 |
 | N/A   29C    P0    50W / 350W |      0MiB / 32480MiB |      0%      Default |
 +-------------------------------+----------------------+----------------------+
+kru0052@dgx:~$ exit
+[kru0052@login4.salomon ~]$ ml purge
+PBS 13.1.1 for cluster Salomon
+[kru0052@login4.salomon ~]$
 ```
 
 **Example for 4 GPU**
 
 ```console
-[kru0052@ldgx ~]$ qsub -q qdgx -l select=4 -l walltime=04:00:00 -I
+[kru0052@login4.salomon ~]$ ml DGX-2
+PBS 18.1.3 for DGX-2 machine
+[kru0052@login4.salomon ~]$ qsub -q qdgx -l select=4 -l walltime=04:00:00 -I
 qsub: waiting for job 256.ldgx to start
 qsub: job 256.ldgx ready
 
@@ -76,12 +87,18 @@ Thu Mar 14 07:45:29 2019
 |   3  Tesla V100-SXM3...  On   | 00000000:5E:00.0 Off |                    0 |
 | N/A   35C    P0    53W / 350W |      0MiB / 32480MiB |      0%      Default |
 +-------------------------------+----------------------+----------------------+
+kru0052@dgx:~$ exit
+[kru0052@login4.salomon ~]$ ml purge
+PBS 13.1.1 for cluster Salomon
+[kru0052@login4.salomon ~]$
 ```
 
 **Example for 16 GPU (all DGX-2)**
 
 ```console
-[kru0052@ldgx ~]$ qsub -q qdgx -l select=16 -l walltime=04:00:00 -I
+[kru0052@login4.salomon ~]$ ml DGX-2
+PBS 18.1.3 for DGX-2 machine
+[kru0052@login4.salomon ~]$ qsub -q qdgx -l select=16 -l walltime=04:00:00 -I
 qsub: waiting for job 258.ldgx to start
 qsub: job 258.ldgx ready
 
@@ -141,6 +158,10 @@ Thu Mar 14 07:46:32 2019
 |  15  Tesla V100-SXM3...  On   | 00000000:E7:00.0 Off |                    0 |
 | N/A   34C    P0    50W / 350W |      0MiB / 32480MiB |      0%      Default |
 +-------------------------------+----------------------+----------------------+
+kru0052@dgx:~$ exit
+[kru0052@login4.salomon ~]$ ml purge
+PBS 13.1.1 for cluster Salomon
+[kru0052@login4.salomon ~]$
 ```
 
 !!! tip
@@ -156,6 +177,8 @@ The jobscript is a user made script controlling a sequence of commands for execu
 #### Example - Singularity Run Tensorflow
 
 ```console
+[kru0052@login4.salomon ~]$ ml DGX-2
+PBS 18.1.3 for DGX-2 machine
 $ qsub -q qdgx -l select=16 -l walltime=01:00:00 -I
 qsub: waiting for job 96.ldgx to start
 qsub: job 96.ldgx ready
@@ -194,6 +217,10 @@ PY 3.5.2 (default, Nov 12 2018, 13:43:14)
     70  70.0 30763.2  0.001  0.324 0.10889
     80  80.0 30845.5  0.001  0.324 0.02988
     90  90.0 26350.9  0.001  0.324 0.00025
+kru0052@dgx:~$ exit
+[kru0052@login4.salomon ~]$ ml purge
+PBS 13.1.1 for cluster Salomon
+[kru0052@login4.salomon ~]$
 ```
 
 **GPU stat**