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docs.it4i.cz
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5a93b59d
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5a93b59d
authored
2 years ago
by
Jan Siwiec
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Merge branch 'dvo0012-dice-patch' into 'master'
Update dice.md See merge request
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Update dice.md
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...
@@ -29,18 +29,50 @@ We have to be sure about your identity, this will be done throught this steps:
...
@@ -29,18 +29,50 @@ We have to be sure about your identity, this will be done throught this steps:
### ***IT4I User (You Have IT4I Account With Access to Cluster Already)***
### ***IT4I User (You Have IT4I Account With Access to Cluster Already)***
-
iR
ods
clients are provided as a module
-
iR
ODS
clients are provided as a module
on our
***Karolina***
cluster ( Barbora is in progress )
-
config file (for client) will be loaded with module too
-
config file (for client) will be loaded with module too
-
PAM passwords is password, you set in aai.it4i.cz
***How to mount your collection***
***How to mount your collection***
-
load module iRODS
```
console
```
console
ssh some_user@
login.
karolina.it4i.cz
ssh some_user@karolina.it4i.cz
ml iRODS
ml iRODS
```
```
now you can choose between Fuse client or iCommands
now you can choose between Fuse client or iCommands
***Fuse***
```
console
$
ml iRODS
The following have been reloaded with a version change:
1) iRODS/0.7.3 =>
iRODS/0.7.6
iRODS configuration file has been created at /home/some_user/.config/iRODS/config.yml.
To mount your iRODS repository at ~/IRODS, run
irodsfs -config ~/.config/iRODS/config.yml ~/IRODS
To unmount it, run
fusermount -u ~/IRODS
$
irodsfs
-config
~/.config/iRODS/config.yml ~/IRODS
time="2022-08-01 12:44:22.980139" level=info msg="Logging to /tmp/irodsfs_cbjqt1ib1ls3g1gtnnog.log" function=processArguments package=main
Password:
time="2022-08-01 12:44:27.319063" level=info msg="Found FUSE Device. Starting iRODS FUSE Lite." function=parentMain package=main
time="2022-08-01 12:44:27.319319" level=info msg="Running the process in the background mode" function=parentRun package=main
time="2022-08-01 12:44:27.319721" level=info msg="Process id = 64406" function=parentRun package=main
time="2022-08-01 12:44:27.319752" level=info msg="Sending configuration data" function=parentRun package=main
time="2022-08-01 12:44:27.319909" level=info msg="Successfully sent configuration data to background process" function=parentRun package=main
time="2022-08-01 12:44:27.555090" level=info msg="Successfully started background process" function=parentRun package=main
```
you can work with fuse as an ordinary directory ( ls, cd, cp, mv etc )
***iCommands***
***iCommands***
```
console
```
console
...
@@ -60,22 +92,13 @@ ils
...
@@ -60,22 +92,13 @@ ils
-
upload
`iput`
, download
`iget`
-
upload
`iput`
, download
`iget`
-
for more help, type
`ihelp`
-
for more help, type
`ihelp`
***Fuse***
```
console
./irodsfs -config ~/config.yml ~/IRODS
cd ~/IRODS
```
you can work with fuse as an ordinary directory
### ***Users Without IT4I Account (No Access to Cluster)***
### ***Users Without IT4I Account (No Access to Cluster)***
-
we suppose, you will upload your data from your local pc/vm
-
we suppose, you will upload your data from your local pc/vm
#### You Need a Client to Connect to iRods Server
#### You Need a Client to Connect to iRods Server
-
t
here are many iRods clients, but we recommend theese:
-
T
here are many iRods clients, but we recommend theese:
-
Cyberduck - for windows / mac, GUI . Password from aai.it4i.cz (keycloak) works
-
Cyberduck - for windows / mac, GUI . Password from aai.it4i.cz (keycloak) works
-
Fuse (irodsfs lite) - for linux, cli
-
Fuse (irodsfs lite) - for linux, cli
-
iCommands - for linux, cli . Password from aai.it4i.cz (keycloak) works
-
iCommands - for linux, cli . Password from aai.it4i.cz (keycloak) works
...
@@ -92,6 +115,7 @@ you can work with fuse as an ordinary directory
...
@@ -92,6 +115,7 @@ you can work with fuse as an ordinary directory
-
work with your irods collection like ordinary directory
-
work with your irods collection like ordinary directory
-
this is linux client only, basic knowledge of commandline is neccessary
-
this is linux client only, basic knowledge of commandline is neccessary
-
PAM passwords is password, you set in aai.it4i.cz
```
console
```
console
cd ~
cd ~
...
...
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