add

README.md

@@ -34,4 +34,3 @@ Smazání html/md souborů
 html_md.sh -d -html
 html_md.sh -d -md
 ```
-

docs.it4i.cz/anselm-cluster-documentation.md

@@ -13,30 +13,31 @@ cores, at least 64GB RAM, and 500GB harddrive. Nodes are interconnected
 by fully non-blocking fat-tree Infiniband network and equipped with
 Intel Sandy Bridge processors. A few nodes are also equipped with NVIDIA
 Kepler GPU or Intel Xeon Phi MIC accelerators. Read more in [Hardware
-Overview](https://docs.it4i.cz/anselm-cluster-documentation/hardware-overview).
+Overview](anselm-cluster-documentation/hardware-overview.html).
 
 The cluster runs bullx Linux [<span
 class="WYSIWYG_LINK"></span>](http://www.bull.com/bullx-logiciels/systeme-exploitation.html)[operating
-system](https://docs.it4i.cz/anselm-cluster-documentation/software/operating-system),
+system](anselm-cluster-documentation/software/operating-system.html),
 which is compatible with the <span class="WYSIWYG_LINK">RedHat</span>
 [<span class="WYSIWYG_LINK">Linux
 family.</span>](http://upload.wikimedia.org/wikipedia/commons/1/1b/Linux_Distribution_Timeline.svg)
 We have installed a wide range of
-[software](https://docs.it4i.cz/anselm-cluster-documentation/software)
+[software](anselm-cluster-documentation/software.1.html)
 packages targeted at different scientific domains. These packages are
 accessible via the [modules
-environment](https://docs.it4i.cz/anselm-cluster-documentation/environment-and-modules).
+environment](anselm-cluster-documentation/environment-and-modules.html).
 
 User data shared file-system (HOME, 320TB) and job data shared
 file-system (SCRATCH, 146TB) are available to users.
 
 The PBS Professional workload manager provides [computing resources
 allocations and job
-execution](https://docs.it4i.cz/anselm-cluster-documentation/resource-allocation-and-job-execution).
+execution](anselm-cluster-documentation/resource-allocation-and-job-execution.html).
 
 Read more on how to [apply for
-resources](https://docs.it4i.cz/get-started-with-it4innovations/applying-for-resources),
+resources](get-started-with-it4innovations/applying-for-resources.html),
 [obtain login
-credentials,](https://docs.it4i.cz/get-started-with-it4innovations/obtaining-login-credentials)
+credentials,](get-started-with-it4innovations/obtaining-login-credentials.html)
 and [access the
-cluster](https://docs.it4i.cz/anselm-cluster-documentation/accessing-the-cluster).
+cluster](anselm-cluster-documentation/accessing-the-cluster.html).
+

docs.it4i.cz/anselm-cluster-documentation/accessing-the-cluster.md

@@ -19,7 +19,7 @@ specifically, by prepending the login node name to the address.
   login2.anselm.it4i.cz   22     ssh        login2
 
 The authentication is by the [private
-key](https://docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/ssh-keys)
+key](../get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/ssh-keys.html)
 
 Please verify SSH fingerprints during the first logon. They are
 identical on all login nodes:<span class="monospace">
@@ -44,7 +44,7 @@ local $ chmod 600 /path/to/id_rsa
 ```
 
 On **Windows**, use [PuTTY ssh
-client](https://docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/putty/putty).
+client](../get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/putty/putty.html).
 
 After logging in, you will see the command prompt:
 
@@ -64,7 +64,7 @@ After logging in, you will see the command prompt:
 
 The environment is **not** shared between login nodes, except for
 [shared
-filesystems](https://docs.it4i.cz/anselm-cluster-documentation/accessing-the-cluster/storage-1#section-1).
+filesystems](accessing-the-cluster/storage-1.html#section-1).
 
 Data Transfer
 -------------
@@ -83,7 +83,7 @@ dm1.anselm.it4i.cz for increased performance.</span>
   <span class="discreet">dm1.anselm.it4i.cz</span>   <span class="discreet">22</span>   <span class="discreet">scp, sftp</span>
 
  The authentication is by the [private
-key](https://docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/ssh-keys)
+key](../get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/ssh-keys.html)
 
 Data transfer rates up to **160MB/s** can be achieved with scp or sftp.
 1TB may be transferred in 1:50h.
@@ -138,4 +138,5 @@ client](http://code.google.com/p/win-sshfs/) provides a
 way to mount the Anselm filesystems directly as an external disc.
 
 More information about the shared file systems is available
-[here](https://docs.it4i.cz/anselm-cluster-documentation/storage-1/storage).
+[here](storage.html).
+

docs.it4i.cz/anselm-cluster-documentation/accessing-the-cluster/outgoing-connections.md

@@ -69,7 +69,8 @@ Remote port forwarding from compute nodes allows applications running on
 the compute nodes to access hosts outside Anselm Cluster.
 
 First, establish the remote port forwarding form the login node, as
-[described above](#port-forwarding-from-login-nodes).
+[described
+above](outgoing-connections.html#port-forwarding-from-login-nodes).
 
 Second, invoke port forwarding from the compute node to the login node.
 Insert following line into your jobscript or interactive shell
@@ -106,7 +107,7 @@ Puppet](http://sockspuppet.com/) server.
 
 Once the proxy server is running, establish ssh port forwarding from
 Anselm to the proxy server, port 1080, exactly as [described
-above](#port-forwarding-from-login-nodes).
+above](outgoing-connections.html#port-forwarding-from-login-nodes).
 
 ``` 
 local $ ssh -R 6000:localhost:1080 anselm.it4i.cz
@@ -114,5 +115,6 @@ local $ ssh -R 6000:localhost:1080 anselm.it4i.cz
 
 Now, configure the applications proxy settings to **localhost:6000**.
 Use port forwarding  to access the [proxy server from compute
-nodes](#port-forwarding-from-compute-nodes) as well .
+nodes](outgoing-connections.html#port-forwarding-from-compute-nodes)
+as well .
 

docs.it4i.cz/anselm-cluster-documentation/accessing-the-cluster/shell-and-data-access/shell-and-data-access.md

@@ -19,7 +19,7 @@ specifically, by prepending the login node name to the address.
   login2.anselm.it4i.cz   22     ssh        login2
 
 The authentication is by the [private
-key](https://docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/ssh-keys)
+key](../../../get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/ssh-keys.html)
 
 Please verify SSH fingerprints during the first logon. They are
 identical on all login nodes:<span class="monospace">
@@ -44,7 +44,7 @@ local $ chmod 600 /path/to/id_rsa
 ```
 
 On **Windows**, use [PuTTY ssh
-client](https://docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/putty/putty).
+client](../../../get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/putty/putty.html).
 
 After logging in, you will see the command prompt:
 
@@ -63,8 +63,7 @@ After logging in, you will see the command prompt:
     [username@login2.anselm ~]$
 
 The environment is **not** shared between login nodes, except for
-[shared
-filesystems](https://docs.it4i.cz/anselm-cluster-documentation/accessing-the-cluster/storage-1#section-1).
+[shared filesystems](../storage-1.html#section-1).
 
 Data Transfer
 -------------
@@ -83,7 +82,7 @@ dm1.anselm.it4i.cz for increased performance.</span>
   <span class="discreet">dm1.anselm.it4i.cz</span>   <span class="discreet">22</span>   <span class="discreet">scp, sftp</span>
 
  The authentication is by the [private
-key](https://docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/ssh-keys)
+key](../../../get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/ssh-keys.html)
 
 Data transfer rates up to **160MB/s** can be achieved with scp or sftp.
 1TB may be transferred in 1:50h.
@@ -138,5 +137,5 @@ client](http://code.google.com/p/win-sshfs/) provides a
 way to mount the Anselm filesystems directly as an external disc.
 
 More information about the shared file systems is available
-[here](https://docs.it4i.cz/anselm-cluster-documentation/storage-1/storage).
+[here](../../storage.html).