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Commit 60b6cfa6 authored by Lukáš Krupčík's avatar Lukáš Krupčík
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5 merge requests!368Update prace.md to document the change from qprace to qprod as the default...,!367Update prace.md to document the change from qprace to qprod as the default...,!366Update prace.md to document the change from qprace to qprod as the default...,!323extended-acls-storage-section,!74Md revision
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...@@ -48,7 +48,7 @@ To check whether your proxy certificate is still valid (by default it's valid 12 ...@@ -48,7 +48,7 @@ To check whether your proxy certificate is still valid (by default it's valid 12
To access Anselm cluster, two login nodes running GSI SSH service are available. The service is available from public Internet as well as from the internal PRACE network (accessible only from other PRACE partners). To access Anselm cluster, two login nodes running GSI SSH service are available. The service is available from public Internet as well as from the internal PRACE network (accessible only from other PRACE partners).
**Access from PRACE network:** #### Access from PRACE network:
It is recommended to use the single DNS name anselm-prace.it4i.cz which is distributed between the two login nodes. If needed, user can login directly to one of the login nodes. The addresses are: It is recommended to use the single DNS name anselm-prace.it4i.cz which is distributed between the two login nodes. If needed, user can login directly to one of the login nodes. The addresses are:
...@@ -68,7 +68,7 @@ When logging from other PRACE system, the prace_service script can be used: ...@@ -68,7 +68,7 @@ When logging from other PRACE system, the prace_service script can be used:
$ gsissh `prace_service -i -s anselm` $ gsissh `prace_service -i -s anselm`
``` ```
**Access from public Internet:** #### Access from public Internet:
It is recommended to use the single DNS name anselm.it4i.cz which is distributed between the two login nodes. If needed, user can login directly to one of the login nodes. The addresses are: It is recommended to use the single DNS name anselm.it4i.cz which is distributed between the two login nodes. If needed, user can login directly to one of the login nodes. The addresses are:
...@@ -122,7 +122,7 @@ Apart from the standard mechanisms, for PRACE users to transfer data to/from Ans ...@@ -122,7 +122,7 @@ Apart from the standard mechanisms, for PRACE users to transfer data to/from Ans
There's one control server and three backend servers for striping and/or backup in case one of them would fail. There's one control server and three backend servers for striping and/or backup in case one of them would fail.
**Access from PRACE network:** #### Access from PRACE network:
| Login address | Port | Node role | | Login address | Port | Node role |
| ---------------------------- | ---- | --------------------------- | | ---------------------------- | ---- | --------------------------- |
...@@ -155,7 +155,7 @@ Or by using prace_service script: ...@@ -155,7 +155,7 @@ Or by using prace_service script:
$ globus-url-copy gsiftp://`prace_service -i -f anselm`/home/prace/_YOUR_ACCOUNT_ON_ANSELM_/_PATH_TO_YOUR_FILE_ file://_LOCAL_PATH_TO_YOUR_FILE_ $ globus-url-copy gsiftp://`prace_service -i -f anselm`/home/prace/_YOUR_ACCOUNT_ON_ANSELM_/_PATH_TO_YOUR_FILE_ file://_LOCAL_PATH_TO_YOUR_FILE_
``` ```
**Access from public Internet:** #### Access from public Internet:
| Login address | Port | Node role | | Login address | Port | Node role |
| ---------------------- | ---- | --------------------------- | | ---------------------- | ---- | --------------------------- |
......
...@@ -54,7 +54,7 @@ Input: **FASTQ file**. ...@@ -54,7 +54,7 @@ Input: **FASTQ file**.
Output: **Aligned file in BAM format**. Output: **Aligned file in BAM format**.
**Sequence Alignment/Map (SAM)** #### Sequence Alignment/Map (SAM)
It is a human readable tab-delimited format in which each read and its alignment is represented on a single line. The format can represent unmapped reads, reads that are mapped to unique locations, and reads that are mapped to multiple locations. It is a human readable tab-delimited format in which each read and its alignment is represented on a single line. The format can represent unmapped reads, reads that are mapped to unique locations, and reads that are mapped to multiple locations.
......
...@@ -48,7 +48,7 @@ To check whether your proxy certificate is still valid (by default it's valid 12 ...@@ -48,7 +48,7 @@ To check whether your proxy certificate is still valid (by default it's valid 12
To access Salomon cluster, two login nodes running GSI SSH service are available. The service is available from public Internet as well as from the internal PRACE network (accessible only from other PRACE partners). To access Salomon cluster, two login nodes running GSI SSH service are available. The service is available from public Internet as well as from the internal PRACE network (accessible only from other PRACE partners).
**Access from PRACE network:** #### Access from PRACE network:
It is recommended to use the single DNS name salomon-prace.it4i.cz which is distributed between the two login nodes. If needed, user can login directly to one of the login nodes. The addresses are: It is recommended to use the single DNS name salomon-prace.it4i.cz which is distributed between the two login nodes. If needed, user can login directly to one of the login nodes. The addresses are:
...@@ -70,7 +70,7 @@ When logging from other PRACE system, the prace_service script can be used: ...@@ -70,7 +70,7 @@ When logging from other PRACE system, the prace_service script can be used:
$ gsissh `prace_service -i -s salomon` $ gsissh `prace_service -i -s salomon`
``` ```
**Access from public Internet:** #### Access from public Internet:
It is recommended to use the single DNS name salomon.it4i.cz which is distributed between the two login nodes. If needed, user can login directly to one of the login nodes. The addresses are: It is recommended to use the single DNS name salomon.it4i.cz which is distributed between the two login nodes. If needed, user can login directly to one of the login nodes. The addresses are:
...@@ -127,7 +127,7 @@ Apart from the standard mechanisms, for PRACE users to transfer data to/from Sal ...@@ -127,7 +127,7 @@ Apart from the standard mechanisms, for PRACE users to transfer data to/from Sal
There's one control server and three backend servers for striping and/or backup in case one of them would fail. There's one control server and three backend servers for striping and/or backup in case one of them would fail.
**Access from PRACE network:** #### Access from PRACE network:
| Login address | Port | Node role | | Login address | Port | Node role |
| ----------------------------- | ---- | --------------------------- | | ----------------------------- | ---- | --------------------------- |
...@@ -160,7 +160,7 @@ Or by using prace_service script: ...@@ -160,7 +160,7 @@ Or by using prace_service script:
$ globus-url-copy gsiftp://`prace_service -i -f salomon`/home/prace/_YOUR_ACCOUNT_ON_SALOMON_/_PATH_TO_YOUR_FILE_ file://_LOCAL_PATH_TO_YOUR_FILE_ $ globus-url-copy gsiftp://`prace_service -i -f salomon`/home/prace/_YOUR_ACCOUNT_ON_SALOMON_/_PATH_TO_YOUR_FILE_ file://_LOCAL_PATH_TO_YOUR_FILE_
``` ```
**Access from public Internet:** #### Access from public Internet:
| Login address | Port | Node role | | Login address | Port | Node role |
| ----------------------- | ---- | --------------------------- | | ----------------------- | ---- | --------------------------- |
......
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