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Commit a46e4ccd authored by Lukáš Krupčík's avatar Lukáš Krupčík
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add singularity it4i

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6 merge requests!368Update prace.md to document the change from qprace to qprod as the default...,!367Update prace.md to document the change from qprace to qprod as the default...,!366Update prace.md to document the change from qprace to qprod as the default...,!323extended-acls-storage-section,!196Master,!187Singularity
......@@ -24,7 +24,7 @@ On clusters we have different versions of operating systems images. Below you se
For current information on available images, refer to the `ml av` statement and the `OS`
## Available operating systems images
## Available Operating Systems Images
**Supported OS:**
......@@ -43,7 +43,7 @@ For current information on available images, refer to the `ml av` statement and
* classic
* shell - automatics start shell after load module
## IT4Innovations wrappers
## IT4Innovations Wrappers
For using modules we prepared special wrappers
......@@ -113,7 +113,7 @@ New version is ready. (/home/login/.singularity/images/CentOS-6.9_20180220092823
In next examples, we will be using Singularity images on clusters.
### Load image
### Load Image
For classic image
......@@ -150,7 +150,7 @@ $ ml CentOS/6.9-GPU
Submited job `qsub -A PROJECT -q qprod -l select=2:mpiprocs=24 -l walltime=00:30:00 -I`
### MPI into image
### MPI Into Image
```console
$ ml CentOS/6.9-shell
......@@ -163,7 +163,7 @@ Singularity CentOS-6.9_20180220092823.img:~> mpirun hostname | wc -l
!!! warning
You allocate two nodes, but MPI into image use only one node.
### MPI outside image
### MPI Outside Image
```console
$ ml CentOS/6.9
......@@ -172,14 +172,14 @@ $ image-mpi hostname | wc -l
48
```
## Use own image on cluster
## Use Own Image On Cluster
1. Prepare image into your local computer
1. Transfer image to your `/home` (for example `.singularity/image`)
1. Load module Singularity (`ml Singularity`)
1. Use your image
## Edit IT4Innovations image
## Edit IT4Innovations Image
1. Transfer image to your local computer
1. Edit image
......
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