[ -> [

docs.it4i/anselm-cluster-documentation/environment-and-modules.md

@@ -8,7 +8,7 @@ After logging in, you may want to configure the environment. Write your preferre
 # ./bashrc
 
 # Source global definitions
-if [ -f /etc/bashrc ]; then
+if [-f /etc/bashrc ]; then
       . /etc/bashrc
 fi
 
@@ -17,7 +17,7 @@ alias qs='qstat -a'
 module load PrgEnv-gnu
 
 # Display information to standard output - only in interactive ssh session
-if [ -n "$SSH_TTY" ]
+if [-n "$SSH_TTY" ]
 then
  module list # Display loaded modules
 fi

docs.it4i/anselm-cluster-documentation/software/ansys/ansys-cfx.md

@@ -34,7 +34,7 @@ procs_per_host=1
 hl=""
 for host in `cat $PBS_NODEFILE`
 do
- if [ "$hl" = "" ]
+ if ["$hl" = "" ]
  then hl="$host:$procs_per_host"
  else hl="${hl}:$host:$procs_per_host"
  fi

docs.it4i/anselm-cluster-documentation/software/ansys/ansys-fluent.md

@@ -100,8 +100,8 @@ To run ANSYS Fluent in batch mode with user's config file you can utilize/modify
  cd $PBS_O_WORKDIR
 
  #We assume that if they didn’t specify arguments then they should use the
- #config file if [ "xx${input}${case}${mpp}${fluent_args}zz" = "xxzz" ]; then
-   if [ -f pbs_fluent.conf ]; then
+ #config file if ["xx${input}${case}${mpp}${fluent_args}zz" = "xxzz" ]; then
+   if [-f pbs_fluent.conf ]; then
      . pbs_fluent.conf
    else
      printf "No command line arguments specified, "

docs.it4i/anselm-cluster-documentation/software/ansys/ansys-ls-dyna.md

@@ -39,7 +39,7 @@ procs_per_host=1
 hl=""
 for host in `cat $PBS_NODEFILE`
 do
- if [ "$hl" = "" ]
+ if ["$hl" = "" ]
  then hl="$host:$procs_per_host"
  else hl="${hl}:$host:$procs_per_host"
  fi

docs.it4i/anselm-cluster-documentation/software/ansys/ansys-mechanical-apdl.md

@@ -35,7 +35,7 @@ procs_per_host=1
 hl=""
 for host in `cat $PBS_NODEFILE`
 do
- if [ "$hl" = "" ]
+ if ["$hl" = "" ]
  then hl="$host:$procs_per_host"
  else hl="${hl}:$host:$procs_per_host"
  fi

docs.it4i/anselm-cluster-documentation/software/ansys/ansys.md

@@ -2,7 +2,7 @@
 
 **[SVS FEM](http://www.svsfem.cz/)** as **[ANSYS Channel partner](http://www.ansys.com/)** for Czech Republic provided all ANSYS licenses for ANSELM cluster and supports of all ANSYS Products (Multiphysics, Mechanical, MAPDL, CFX, Fluent, Maxwell, LS-DYNA...) to IT staff and ANSYS users. If you are challenging to problem of ANSYS functionality contact please [hotline@svsfem.cz](mailto:hotline@svsfem.cz?subject=Ostrava%20-%20ANSELM)
 
-Anselm provides commercial as well as academic variants. Academic variants are distinguished by "**Academic...**" word in the name of license or by two letter preposition "**aa\_**" in the license feature name. Change of license is realized on command line respectively directly in user's PBS file (see individual products). [ More about licensing here](ansys/licensing/)
+Anselm provides commercial as well as academic variants. Academic variants are distinguished by "**Academic...**" word in the name of license or by two letter preposition "**aa\_**" in the license feature name. Change of license is realized on command line respectively directly in user's PBS file (see individual products). [More about licensing here](ansys/licensing/)
 
 To load the latest version of any ANSYS product (Mechanical, Fluent, CFX, MAPDL,...) load the module:
 

docs.it4i/anselm-cluster-documentation/software/intel-xeon-phi.md

@@ -245,7 +245,7 @@ Some interesting compiler flags useful not only for code debugging are:
 
 Intel MKL includes an Automatic Offload (AO) feature that enables computationally intensive MKL functions called in user code to benefit from attached Intel Xeon Phi coprocessors automatically and transparently.
 
-Behavioral of automatic offload mode is controlled by functions called within the program or by environmental variables. Complete list of controls is listed [ here](http://software.intel.com/sites/products/documentation/doclib/mkl_sa/11/mkl_userguide_lnx/GUID-3DC4FC7D-A1E4-423D-9C0C-06AB265FFA86.htm).
+Behavioral of automatic offload mode is controlled by functions called within the program or by environmental variables. Complete list of controls is listed [here](http://software.intel.com/sites/products/documentation/doclib/mkl_sa/11/mkl_userguide_lnx/GUID-3DC4FC7D-A1E4-423D-9C0C-06AB265FFA86.htm).
 
 The Automatic Offload may be enabled by either an MKL function call within the code:
 
@@ -259,7 +259,7 @@ or by setting environment variable
     $ export MKL_MIC_ENABLE=1
 ```
 
-To get more information about automatic offload please refer to "[Using Intel® MKL Automatic Offload on Intel ® Xeon Phi™ Coprocessors](http://software.intel.com/sites/default/files/11MIC42_How_to_Use_MKL_Automatic_Offload_0.pdf)" white paper or [ Intel MKL documentation](https://software.intel.com/en-us/articles/intel-math-kernel-library-documentation).
+To get more information about automatic offload please refer to "[Using Intel® MKL Automatic Offload on Intel ® Xeon Phi™ Coprocessors](http://software.intel.com/sites/default/files/11MIC42_How_to_Use_MKL_Automatic_Offload_0.pdf)" white paper or [Intel MKL documentation](https://software.intel.com/en-us/articles/intel-math-kernel-library-documentation).
 
 ### Automatic Offload Example
 

docs.it4i/salomon/environment-and-modules.md

@@ -8,7 +8,7 @@ After logging in, you may want to configure the environment. Write your preferre
 # ./bashrc
 
 # Source global definitions
-if [ -f /etc/bashrc ]; then
+if [-f /etc/bashrc ]; then
       . /etc/bashrc
 fi
 
@@ -17,7 +17,7 @@ alias qs='qstat -a'
 module load intel/2015b
 
 # Display information to standard output - only in interactive ssh session
-if [ -n "$SSH_TTY" ]
+if [-n "$SSH_TTY" ]
 then
  module list # Display loaded modules
 fi

docs.it4i/salomon/introduction.md

@@ -2,7 +2,7 @@
 
 Welcome to Salomon supercomputer cluster. The Salomon cluster consists of 1008 compute nodes, totaling 24192 compute cores with 129 TB RAM and giving over 2 Pflop/s theoretical peak performance. Each node is a powerful x86-64 computer, equipped with 24 cores, at least 128 GB RAM. Nodes are interconnected by 7D Enhanced hypercube InfiniBand network and equipped with Intel Xeon E5-2680v3 processors. The Salomon cluster consists of 576 nodes without accelerators and 432 nodes equipped with Intel Xeon Phi MIC accelerators. Read more in [Hardware Overview](hardware-overview/).
 
-The cluster runs [CentOS Linux](http://www.bull.com/bullx-logiciels/systeme-exploitation.html) operating system, which is compatible with the RedHat [ Linux family.](http://upload.wikimedia.org/wikipedia/commons/1/1b/Linux_Distribution_Timeline.svg)
+The cluster runs [CentOS Linux](http://www.bull.com/bullx-logiciels/systeme-exploitation.html) operating system, which is compatible with the RedHat [Linux family.](http://upload.wikimedia.org/wikipedia/commons/1/1b/Linux_Distribution_Timeline.svg)
 
 **Water-cooled Compute Nodes With MIC Accelerator**
 

docs.it4i/salomon/software/ansys/ansys-cfx.md

@@ -34,7 +34,7 @@ procs_per_host=1
 hl=""
 for host in `cat $PBS_NODEFILE`
 do
- if [ "$hl" = "" ]
+ if ["$hl" = "" ]
  then hl="$host:$procs_per_host"
  else hl="${hl}:$host:$procs_per_host"
  fi

docs.it4i/salomon/software/ansys/ansys-fluent.md

@@ -100,8 +100,8 @@ To run ANSYS Fluent in batch mode with user's config file you can utilize/modify
  cd $PBS_O_WORKDIR
 
  #We assume that if they didn’t specify arguments then they should use the
- #config file if [ "xx${input}${case}${mpp}${fluent_args}zz" = "xxzz" ]; then
-   if [ -f pbs_fluent.conf ]; then
+ #config file if ["xx${input}${case}${mpp}${fluent_args}zz" = "xxzz" ]; then
+   if [-f pbs_fluent.conf ]; then
      . pbs_fluent.conf
    else
      printf "No command line arguments specified, "

docs.it4i/salomon/software/ansys/ansys-ls-dyna.md

@@ -39,7 +39,7 @@ procs_per_host=1
 hl=""
 for host in `cat $PBS_NODEFILE`
 do
- if [ "$hl" = "" ]
+ if ["$hl" = "" ]
  then hl="$host:$procs_per_host"
  else hl="${hl}:$host:$procs_per_host"
  fi

docs.it4i/salomon/software/ansys/ansys-mechanical-apdl.md

@@ -35,7 +35,7 @@ procs_per_host=1
 hl=""
 for host in `cat $PBS_NODEFILE`
 do
- if [ "$hl" = "" ]
+ if ["$hl" = "" ]
  then hl="$host:$procs_per_host"
  else hl="${hl}:$host:$procs_per_host"
  fi

docs.it4i/salomon/software/ansys/ansys.md

@@ -2,7 +2,7 @@
 
 **[SVS FEM](http://www.svsfem.cz/)** as **[ANSYS Channel partner](http://www.ansys.com/)** for Czech Republic provided all ANSYS licenses for ANSELM cluster and supports of all ANSYS Products (Multiphysics, Mechanical, MAPDL, CFX, Fluent, Maxwell, LS-DYNA...) to IT staff and ANSYS users. If you are challenging to problem of ANSYS functionality contact please [hotline@svsfem.cz](mailto:hotline@svsfem.cz?subject=Ostrava%20-%20ANSELM)
 
-Anselm provides as commercial as academic variants. Academic variants are distinguished by "**Academic...**" word in the name of license or by two letter preposition "**aa\_**" in the license feature name. Change of license is realized on command line respectively directly in user's pbs file (see individual products). [ More about licensing here](licensing/)
+Anselm provides as commercial as academic variants. Academic variants are distinguished by "**Academic...**" word in the name of license or by two letter preposition "**aa\_**" in the license feature name. Change of license is realized on command line respectively directly in user's pbs file (see individual products). [More about licensing here](licensing/)
 
 To load the latest version of any ANSYS product (Mechanical, Fluent, CFX, MAPDL,...) load the module:
 

docs.it4i/salomon/software/debuggers/allinea-performance-reports.md

@@ -28,7 +28,7 @@ Instead of [running your MPI program the usual way](../mpi/mpi/), use the the pe
     $ perf-report mpirun ./mympiprog.x
 ```
 
-The mpi program will run as usual. The perf-report creates two additional files, in \*.txt and \*.html format, containing the performance report. Note that demanding MPI codes should be run within [ the queue system](../../resource-allocation-and-job-execution/job-submission-and-execution/).
+The mpi program will run as usual. The perf-report creates two additional files, in \*.txt and \*.html format, containing the performance report. Note that demanding MPI codes should be run within [the queue system](../../resource-allocation-and-job-execution/job-submission-and-execution/).
 
 ## Example
 

docs.it4i/salomon/software/intel-xeon-phi.md

@@ -258,7 +258,7 @@ or by setting environment variable
     $ export MKL_MIC_ENABLE=1
 ```
 
-To get more information about automatic offload please refer to "[Using Intel® MKL Automatic Offload on Intel ® Xeon Phi™ Coprocessors](http://software.intel.com/sites/default/files/11MIC42_How_to_Use_MKL_Automatic_Offload_0.pdf)" white paper or [ Intel MKL documentation](https://software.intel.com/en-us/articles/intel-math-kernel-library-documentation).
+To get more information about automatic offload please refer to "[Using Intel® MKL Automatic Offload on Intel ® Xeon Phi™ Coprocessors](http://software.intel.com/sites/default/files/11MIC42_How_to_Use_MKL_Automatic_Offload_0.pdf)" white paper or [Intel MKL documentation](https://software.intel.com/en-us/articles/intel-math-kernel-library-documentation).
 
 ### Automatic Offload Example