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Commit ab77b1a2 authored by Pavel Jirásek's avatar Pavel Jirásek
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Merge branch 'content_revision' into 'master'

Content revision

See merge request !92
parents 3650e1bd 5fe32692
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5 merge requests!368Update prace.md to document the change from qprace to qprod as the default...,!367Update prace.md to document the change from qprace to qprod as the default...,!366Update prace.md to document the change from qprace to qprod as the default...,!323extended-acls-storage-section,!92Content revision
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......@@ -67,15 +67,15 @@ corresponding information is unavailable.
| --------- | ---------- | ----------------------------------------------------- |
| 1 | QNAME | Query NAME of the read or the read pai |
| 2 | FLAG | Bitwise FLAG (pairing,strand,mate strand,etc.) |
| 3 | RNAME | <p>Reference sequence NAME |
| 4 | POS | <p>1-Based leftmost POSition of clipped alignment |
| 5 | MAPQ | <p>MAPping Quality (Phred-scaled) |
| 6 | CIGAR | <p>Extended CIGAR string (operations:MIDNSHP) |
| 7 | MRNM | <p>Mate REference NaMe ('=' if same RNAME) |
| 8 | MPOS | <p>1-Based leftmost Mate POSition |
| 9 | ISIZE | <p>Inferred Insert SIZE |
| 10 | SEQ | <p>Query SEQuence on the same strand as the reference |
| 11 | QUAL | <p>Query QUALity (ASCII-33=Phred base quality) |
| 3 | RNAME | Reference sequence NAME |
| 4 | POS | 1-Based leftmost POSition of clipped alignment |
| 5 | MAPQ | MAPping Quality (Phred-scaled) |
| 6 | CIGAR | Extended CIGAR string (operations:MIDNSHP) |
| 7 | MRNM | Mate REference NaMe ('=' if same RNAME) |
| 8 | MPOS | 1-Based leftmost Mate POSition |
| 9 | ISIZE | Inferred Insert SIZE |
| 10 | SEQ | Query SEQuence on the same strand as the reference |
| 11 | QUAL | Query QUALity (ASCII-33=Phred base quality) |
Table 1 . Mandatory fields in the SAM format.
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