Merge branch 'sorted_software' into 'master'

Sorted software

See merge request !35

mkdocs.yml

@@ -42,70 +42,70 @@ pages:
     - Storage: anselm-cluster-documentation/storage.md
     - Software:
       - Modules: modules-anselm.md
+      - 'Ansys':
+        - Introduction: anselm-cluster-documentation/software/ansys/ansys.md
+        - ANSYS CFX: anselm-cluster-documentation/software/ansys/ansys-cfx.md
+        - ANSYS Fluent: anselm-cluster-documentation/software/ansys/ansys-fluent.md
+        - ANSYS LS-DYNA: anselm-cluster-documentation/software/ansys/ansys-ls-dyna.md
+        - ANSYS MAPDL: anselm-cluster-documentation/software/ansys/ansys-mechanical-apdl.md
+        - LS-DYNA: anselm-cluster-documentation/software/ansys/ls-dyna.md
+      - 'Debuggers':
+        - Allinea Forge (DDT,MAP): anselm-cluster-documentation/software/debuggers/allinea-ddt.md
+        - Allinea Performance Reports: anselm-cluster-documentation/software/debuggers/allinea-performance-reports.md
+        - CUBE: anselm-cluster-documentation/software/debuggers/cube.md
+        - Intel Performance Counter Monitor: anselm-cluster-documentation/software/debuggers/intel-performance-counter-monitor.md
+        - Intel VTune Amplifier: anselm-cluster-documentation/software/debuggers/intel-vtune-amplifier.md
+        - PAPI: anselm-cluster-documentation/software/debuggers/papi.md
+        - Scalasca: anselm-cluster-documentation/software/debuggers/scalasca.md
+        - Score-P: anselm-cluster-documentation/software/debuggers/score-p.md
+        - Total View: anselm-cluster-documentation/software/debuggers/total-view.md
+        - VNC: anselm-cluster-documentation/software/debuggers/debuggers.md
+        - Valgrind: anselm-cluster-documentation/software/debuggers/valgrind.md
+        - Vampir: anselm-cluster-documentation/software/debuggers/vampir.md
+      - 'Chemistry':
+        - Molpro: anselm-cluster-documentation/software/chemistry/molpro.md
+        - NWChem: anselm-cluster-documentation/software/chemistry/nwchem.md
       - COMSOL: anselm-cluster-documentation/software/comsol-multiphysics.md
-      - ParaView: anselm-cluster-documentation/software/paraview.md
       - Compilers: anselm-cluster-documentation/software/compilers.md
-      - nVidia CUDA: anselm-cluster-documentation/software/nvidia-cuda.md
       - GPI-2: anselm-cluster-documentation/software/gpi2.md
-      - OpenFOAM: anselm-cluster-documentation/software/openfoam.md
-      - ISV Licenses: anselm-cluster-documentation/software/isv_licenses.md
-      - Intel Xeon Phi: anselm-cluster-documentation/software/intel-xeon-phi.md
-      - Virtualization: anselm-cluster-documentation/software/kvirtualization.md
-      - Java: anselm-cluster-documentation/software/java.md
-      - Operating System: anselm-cluster-documentation/software/operating-system.md
       - 'Intel Suite':
         - Introduction: anselm-cluster-documentation/software/intel-suite/introduction.md
-        - Intel MKL: anselm-cluster-documentation/software/intel-suite/intel-mkl.md
         - Intel Compilers: anselm-cluster-documentation/software/intel-suite/intel-compilers.md
+        - Intel Debugger: anselm-cluster-documentation/software/intel-suite/intel-debugger.md
         - Intel IPP: anselm-cluster-documentation/software/intel-suite/intel-integrated-performance-primitives.md
+        - Intel MKL: anselm-cluster-documentation/software/intel-suite/intel-mkl.md
         - Intel TBB: anselm-cluster-documentation/software/intel-suite/intel-tbb.md
-        - Intel Debugger: anselm-cluster-documentation/software/intel-suite/intel-debugger.md
+      - Intel Xeon Phi: anselm-cluster-documentation/software/intel-xeon-phi.md
+      - ISV Licenses: anselm-cluster-documentation/software/isv_licenses.md
+      - Java: anselm-cluster-documentation/software/java.md
       - 'MPI':
         - Introduction: anselm-cluster-documentation/software/mpi/mpi.md
         - MPI4Py (MPI for Python): anselm-cluster-documentation/software/mpi/mpi4py-mpi-for-python.md
         - Running OpenMPI: anselm-cluster-documentation/software/mpi/Running_OpenMPI.md
         - Running MPICH2: anselm-cluster-documentation/software/mpi/running-mpich2.md
+      - 'Numerical Languages':
+        - Introduction: anselm-cluster-documentation/software/numerical-languages/introduction.md
+        - Matlab 2013-2014: anselm-cluster-documentation/software/numerical-languages/matlab_1314.md
+        - Matlab: anselm-cluster-documentation/software/numerical-languages/matlab.md
+        - Octave: anselm-cluster-documentation/software/numerical-languages/octave.md
+        - R: anselm-cluster-documentation/software/numerical-languages/r.md
       - 'Numerical Libraries':
-        - Intel numerical libraries: anselm-cluster-documentation/software/numerical-libraries/intel-numerical-libraries.md
-        - PETSc: anselm-cluster-documentation/software/numerical-libraries/petsc.md
-        - Trilinos: anselm-cluster-documentation/software/numerical-libraries/trilinos.md
         - FFTW: anselm-cluster-documentation/software/numerical-libraries/fftw.md
         - GSL: anselm-cluster-documentation/software/numerical-libraries/gsl.md
-        - MAGMA for Intel Xeon Phi: anselm-cluster-documentation/software/numerical-libraries/magma-for-intel-xeon-phi.md
         - HDF5: anselm-cluster-documentation/software/numerical-libraries/hdf5.md
+        - Intel numerical libraries: anselm-cluster-documentation/software/numerical-libraries/intel-numerical-libraries.md
+        - MAGMA for Intel Xeon Phi: anselm-cluster-documentation/software/numerical-libraries/magma-for-intel-xeon-phi.md
+        - PETSc: anselm-cluster-documentation/software/numerical-libraries/petsc.md
+        - Trilinos: anselm-cluster-documentation/software/numerical-libraries/trilinos.md
+      - nVidia CUDA: anselm-cluster-documentation/software/nvidia-cuda.md
       - 'Omics Master':
         - Diagnostic component (TEAM): anselm-cluster-documentation/software/omics-master/diagnostic-component-team.md
         - Priorization component (BiERApp): anselm-cluster-documentation/software/omics-master/priorization-component-bierapp.md
         - Overview: anselm-cluster-documentation/software/omics-master/overview.md
-      - 'Debuggers':
-        - Valgrind: anselm-cluster-documentation/software/debuggers/valgrind.md
-        - PAPI: anselm-cluster-documentation/software/debuggers/papi.md
-        - Allinea Forge (DDT,MAP): anselm-cluster-documentation/software/debuggers/allinea-ddt.md
-        - Total View: anselm-cluster-documentation/software/debuggers/total-view.md
-        - CUBE: anselm-cluster-documentation/software/debuggers/cube.md
-        - Intel VTune Amplifier: anselm-cluster-documentation/software/debuggers/intel-vtune-amplifier.md
-        - VNC: anselm-cluster-documentation/software/debuggers/debuggers.md
-        - Scalasca: anselm-cluster-documentation/software/debuggers/scalasca.md
-        - Score-P: anselm-cluster-documentation/software/debuggers/score-p.md
-        - Intel Performance Counter Monitor: anselm-cluster-documentation/software/debuggers/intel-performance-counter-monitor.md
-        - Allinea Performance Reports: anselm-cluster-documentation/software/debuggers/allinea-performance-reports.md
-        - Vampir: anselm-cluster-documentation/software/debuggers/vampir.md
-      - 'Numerical Languages':
-        - Introduction: anselm-cluster-documentation/software/numerical-languages/introduction.md
-        - R: anselm-cluster-documentation/software/numerical-languages/r.md
-        - Matlab 2013-2014: anselm-cluster-documentation/software/numerical-languages/matlab_1314.md
-        - Matlab: anselm-cluster-documentation/software/numerical-languages/matlab.md
-        - Octave: anselm-cluster-documentation/software/numerical-languages/octave.md
-      - 'Chemistry':
-        - Molpro: anselm-cluster-documentation/software/chemistry/molpro.md
-        - NWChem: anselm-cluster-documentation/software/chemistry/nwchem.md
-      - 'Ansys':
-        - Introduction: anselm-cluster-documentation/software/ansys/ansys.md
-        - ANSYS CFX: anselm-cluster-documentation/software/ansys/ansys-cfx.md
-        - ANSYS LS-DYNA: anselm-cluster-documentation/software/ansys/ansys-ls-dyna.md
-        - ANSYS MAPDL: anselm-cluster-documentation/software/ansys/ansys-mechanical-apdl.md
-        - LS-DYNA: anselm-cluster-documentation/software/ansys/ls-dyna.md
-        - ANSYS Fluent: anselm-cluster-documentation/software/ansys/ansys-fluent.md
+      - OpenFOAM: anselm-cluster-documentation/software/openfoam.md
+      - Operating System: anselm-cluster-documentation/software/operating-system.md
+      - ParaView: anselm-cluster-documentation/software/paraview.md
+      - Virtualization: anselm-cluster-documentation/software/kvirtualization.md
   - Salomon Cluster:
     - Introduction: salomon/introduction.md
     - PRACE User Support: salomon/prace.md
@@ -124,54 +124,54 @@ pages:
     - Software:
       - Modules: modules-salomon.md
       - UV Modules: modules-salomon-uv.md
+      - 'Ansys':
+        - Introduction: salomon/software/ansys/ansys.md
+        - ANSYS CFX: salomon/software/ansys/ansys-cfx.md
+        - ANSYS Fluent: salomon/software/ansys/ansys-fluent.md
+        - ANSYS LS-DYNA: salomon/software/ansys/ansys-ls-dyna.md
+        - ANSYS MAPDL: salomon/software/ansys/ansys-mechanical-apdl.md
+        - Workbench: salomon/software/ansys/workbench.md
+        - Setting license preferences: salomon/software/ansys/licensing.md
+        - Licensing and Available Versions: salomon/software/ansys/setting-license-preferences.md
+      - 'Chemistry':
+        - Molpro: salomon/software/chemistry/molpro.md
+        - NWChem: salomon/software/chemistry/nwchem.md
+        - Phono3py: salomon/software/chemistry/phono3py.md
       - Compilers: salomon/software/compilers.md
-      - Intel Xeon Phi: salomon/software/intel-xeon-phi.md
-      - Java: salomon/software/java.md
-      - Operating System: salomon/software/operating-system.md
+      - 'Comsol':
+        - COMSOL: salomon/software/comsol/comsol-multiphysics.md
+        - Licensing and Available Versions: salomon/software/comsol/licensing-and-available-versions.md
+      - 'Debuggers':
+        - Introduction: salomon/software/debuggers/Introduction.md
+        - Aislinn: salomon/software/debuggers/aislinn.md
+        - Allinea Forge (DDT,MAP): salomon/software/debuggers/allinea-ddt.md
+        - Allinea Performance Reports: salomon/software/debuggers/allinea-performance-reports.md
+        - Intel VTune Amplifier XE: salomon/software/debuggers/intel-vtune-amplifier.md
+        - Total View: salomon/software/debuggers/total-view.md
+        - Valgrind: salomon/software/debuggers/valgrind.md
+        - Vampir: salomon/software/debuggers/vampir.md
       - 'Intel Suite':
         - Introduction: salomon/software/intel-suite/intel-parallel-studio-introduction.md
-        - Intel MKL: salomon/software/intel-suite/intel-mkl.md
+        - Intel Advisor: salomon/software/intel-suite/intel-advisor.md
         - Intel Compilers: salomon/software/intel-suite/intel-compilers.md
-        - Intel IPP: salomon/software/intel-suite/intel-integrated-performance-primitives.md
-        - Intel TBB: salomon/software/intel-suite/intel-tbb.md
         - Intel Debugger: salomon/software/intel-suite/intel-debugger.md
+        - Intel IPP: salomon/software/intel-suite/intel-integrated-performance-primitives.md
         - Intel Inspector: salomon/software/intel-suite/intel-inspector.md
+        - Intel MKL: salomon/software/intel-suite/intel-mkl.md
+        - Intel TBB: salomon/software/intel-suite/intel-tbb.md
         - Intel Trace Analyzer and Collector: salomon/software/intel-suite/intel-trace-analyzer-and-collector.md
-        - Intel Advisor: salomon/software/intel-suite/intel-advisor.md
+      - Intel Xeon Phi: salomon/software/intel-xeon-phi.md
+      - Java: salomon/software/java.md
       - 'MPI':
         - Introduction: salomon/software/mpi/mpi.md
         - MPI4Py (MPI for Python): salomon/software/mpi/mpi4py-mpi-for-python.md
         - Running OpenMPI: salomon/software/mpi/Running_OpenMPI.md
-      - 'Debuggers':
-        - Introduction: salomon/software/debuggers/Introduction.md
-        - Valgrind: salomon/software/debuggers/valgrind.md
-        - Allinea Forge (DDT,MAP): salomon/software/debuggers/allinea-ddt.md
-        - Total View: salomon/software/debuggers/total-view.md
-        - Intel VTune Amplifier XE: salomon/software/debuggers/intel-vtune-amplifier.md
-        - Aislinn: salomon/software/debuggers/aislinn.md
-        - Allinea Performance Reports: salomon/software/debuggers/allinea-performance-reports.md
-        - Vampir: salomon/software/debuggers/vampir.md
       - 'Numerical Languages':
         - Introduction: salomon/software/numerical-languages/introduction.md
-        - R: salomon/software/numerical-languages/r.md
         - Matlab: salomon/software/numerical-languages/matlab.md
         - Octave: salomon/software/numerical-languages/octave.md
-      - 'Chemistry':
-        - Molpro: salomon/software/chemistry/molpro.md
-        - Phono3py: salomon/software/chemistry/phono3py.md
-        - NWChem: salomon/software/chemistry/nwchem.md
-      - 'Comsol':
-        - COMSOL: salomon/software/comsol/comsol-multiphysics.md
-        - Licensing and Available Versions: salomon/software/comsol/licensing-and-available-versions.md
-      - 'Ansys':
-        - Introduction: salomon/software/ansys/ansys.md
-        - Workbench: salomon/software/ansys/workbench.md
-        - ANSYS CFX: salomon/software/ansys/ansys-cfx.md
-        - ANSYS LS-DYNA: salomon/software/ansys/ansys-ls-dyna.md
-        - ANSYS MAPDL: salomon/software/ansys/ansys-mechanical-apdl.md
-        - ANSYS Fluent: salomon/software/ansys/ansys-fluent.md
-        - Setting license preferences: salomon/software/ansys/licensing.md
-        - Licensing and Available Versions: salomon/software/ansys/setting-license-preferences.md
+        - R: salomon/software/numerical-languages/r.md
+      - Operating System: salomon/software/operating-system.md
   - PBSPro Documentation: pbspro-documentation/pbspro.md
   - Testing:
     - Colors: colors.md