Update comsol-multiphysics.md

docs.it4i/software/cae/comsol/comsol-multiphysics.md

@@ -20,7 +20,7 @@ On the clusters, COMSOL is available in the latest stable version. There are two
 
 * **Commercial** or so called **COM variant**, which can used also for commercial activities. **COM variant** has only subset of features compared to the **EDU variant** available. More about licensing [here][1].
 
-To load the COMSOL module, use:
+To load the `COMSOL` module, use:
 
 ```console
 $ ml COMSOL
@@ -43,7 +43,7 @@ $ ml COMSOL
 $ comsol
 ```
 
-To run COMSOL in batch mode without the COMSOL Desktop GUI environment, utilize the default (comsol.pbs) job script and execute it via the qsub command:
+To run COMSOL in batch mode without the COMSOL Desktop GUI environment, utilize the default (comsol.pbs) job script and execute it via the `qsub` command:
 
 ```bash
 #!/bin/bash
@@ -70,7 +70,7 @@ ntask=$(wc -l $PBS_NODEFILE)
 comsol -nn ${ntask} batch -configuration /tmp –mpiarg –rmk –mpiarg pbs -tmpdir /scratch/.../$USER/ -inputfile name_input_f.mph -outputfile name_output_f.mph -batchlog name_log_f.log
 ```
 
-A working directory has to be created before sending the (comsol.pbs) job script into the queue. The input file (name_input_f.mph) has to be in the working directory or a full path to the input file has to be specified. The appropriate path to the temp directory of the job has to be set by the -tmpdir command option.
+A working directory has to be created before sending the (comsol.pbs) job script into the queue. The input file (name_input_f.mph) has to be in the working directory or a full path to the input file has to be specified. The appropriate path to the temp directory of the job has to be set by the `-tmpdir` command option.
 
 ## LiveLink for MATLAB
 
@@ -88,7 +88,7 @@ $ comsol server MATLAB
 
 On the first start of the LiveLink for MATLAB (client-MATLAB/server-COMSOL connection), the login and password is requested; this information is not requested again.
 
-To run LiveLink for MATLAB in batch mode with (comsol_matlab.pbs) job script, you can utilize/modify the following script and execute it via the qsub command.
+To run LiveLink for MATLAB in batch mode with (comsol_matlab.pbs) job script, you can utilize/modify the following script and execute it via the `qsub` command.
 
 ```bash
 #!/bin/bash
@@ -117,7 +117,7 @@ cd /apps/cae/COMSOL/51/mli
 matlab -nodesktop -nosplash -r "mphstart; addpath /scratch/work/user/$USER/work; test_job"
 ```
 
-This example shows how to run LiveLink for MATLAB with the following configuration: 3 nodes and 16 cores per node. A working directory has to be created before submitting (comsol_matlab.pbs) job script into the queue. The input file (test_job.m) has to be in the working directory or a full path to the input file has to be specified. The Matlab command option (-r ”mphstart”) created a connection with a COMSOL server using the default port number.
+This example shows how to run LiveLink for MATLAB with the following configuration: 3 nodes and 16 cores per node. A working directory has to be created before submitting (comsol_matlab.pbs) job script into the queue. The input file (test_job.m) has to be in the working directory or a full path to the input file has to be specified. The Matlab command option (`-r ”mphstart”`) created a connection with a COMSOL server using the default port number.
 
 [1]: licensing-and-available-versions.md
 [2]: ../../../general/accessing-the-clusters/graphical-user-interface/x-window-system.md

[Jan Siwiec]

relates to #70