5 merge requests!368Update prace.md to document the change from qprace to qprod as the default...,!367Update prace.md to document the change from qprace to qprod as the default...,!366Update prace.md to document the change from qprace to qprod as the default...,!323extended-acls-storage-section,!196Master
@@ -7,17 +7,30 @@ More details on the capabilities of LMGC90 are available [here][Welcome].
## Modules
The LMGC90, version 2017.rc1 is available on Salomon via module LMGC90:
The LMGC90, version 2017.rc1 is available on Salomon via module `LMGC90`:
```sh
$ ml LMGC90
```
The module sets up environment variables and loads some other modules, required for running LMGC90 python scripts. This particular command loads the default module, which is LMGC90/2017.rc1-GCC-6.3.0-2.27, and modules: GCCcore/6.3.0, binutils/2.27-GCCcore-6.3.0, GCC/6.3.0-2.27, bzip2/1.0.6, zlib/1.2.8, ncurses/6.0, libreadline/6.3, Tcl/8.6.3, SQLite/3.8.8.1, Python/2.7.9.
The module sets up environment variables and loads some other modules, required for running LMGC90 python scripts. This particular command loads the default module, which is `LMGC90/2017.rc1-GCC-6.3.0-2.27`, and modules:
```console
GCCcore/6.3.0
binutils/2.27-GCCcore-6.3.0
GCC/6.3.0-2.27
bzip2/1.0.6
zlib/1.2.8
ncurses/6.0
libreadline/6.3
Tcl/8.6.3
SQLite/3.8.8.1
Python/2.7.9
```
## Running generic example
LMGC90 software main API is a Python module. It comes with a pre-processor written in Python. There are several examples that you can copy from the *examples* directory which is in */apps/all/LMGC90/2017.rc1-GCC-6.3.0-2.27* folder. Follow the next steps to run one of them.
LMGC90 software main API is a Python module. It comes with a pre-processor written in Python. There are several examples that you can copy from the `examples` directory which is in `/apps/all/LMGC90/2017.rc1-GCC-6.3.0-2.27` folder. Follow the next steps to run one of them.
First choose an example and open a terminal in the directory of the copied example.
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@@ -25,29 +38,29 @@ First choose an example and open a terminal in the directory of the copied examp
To have more information on the pre-processor open in a web navigator the file [docs/pre_lmgc/index.html][pre_lmgc].
To run an example, if there is no *DATBOX* directory or it is empty, run the Python generation script which is mostly called *gen_sample.py* with the command:
To run an example, if there is no `DATBOX` directory or it is empty, run the Python generation script which is mostly called `gen_sample.py` with the command:
```sh
```console
$python gen_sample.py
```
You should now have a *DATBOX* directory containing all needed *.DAT* and *.INI* files.
You should now have a `DATBOX` directory containing all needed `.DAT` and `.INI` files.
### Computation
Now run the command script usually called *command.py*:
Now run the command script usually called `command.py`:
```sh
```console
$python command.py
```
To get more information on the structure on command scripts read the documentation opening the file [docs/chipy/index.html][chipy] in a web browser.
Once the computation is done, you should get the directory *OUTBOX* containing ASCII output files, and a *DISPLAY* directory with output file readable by paraview.
Once the computation is done, you should get the directory `OUTBOX` containing ASCII output files, and a `DISPLAY` directory with output file readable by paraview.
### Postprocessing and Visualization
The ASCII files in *POSTPRO* directory result from the commands in the *DATBOX/POSTPRO.DAT* file. To have more information on how to use these features read the documents [manuals/LMGC90_Postpro.pdf][LMGC90_Postpro.pdf].
The files inside the *DISPLAY* directory can be visualized with paraview. It is advised to read the *.pvd* files which ensure time consistency. The different output files are:
The ASCII files in `POSTPRO` directory result from the commands in the `DATBOX/POSTPRO.DAT` file. To have more information on how to use these features read the documents [manuals/LMGC90_Postpro.pdf][LMGC90_Postpro.pdf].
The files inside the `DISPLAY` directory can be visualized with paraview. It is advised to read the `.pvd` files which ensure time consistency. The different output files are:
