Menu clean-up

mkdocs.yml

@@ -7,26 +7,23 @@ copyright: Copyright (c) 2016 IT4Innovations
 
 pages:
   - Home: index.md
-  - History of Downtimes: downtimes_history.md
-  - Get Started with IT4Innovations:
+#  - History of Downtimes: downtimes_history.md
+  - General:
     - Applying for Resources: get-started-with-it4innovations/applying-for-resources.md
-  - Get Started with IT4Innovations-Obtaining Login Credentials:
     - Obtaining Login Credentials: get-started-with-it4innovations/obtaining-login-credentials/obtaining-login-credentials.md
     - Certificates FAQ: get-started-with-it4innovations/obtaining-login-credentials/certificates-faq.md
-  - Get Started with IT4Innovations-Accessing the Clusters:
     - Accessing the Clusters: get-started-with-it4innovations/accessing-the-clusters/introduction.md
-  - Get Started with IT4Innovations-Accessing the Clusters-Shell access and data transfer:
-    - VPN-Connection-Fail-in-Win-8.1: get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/vpn-connection-fail-in-win-8.1.md
+#    - VPN-Connection-Fail-in-Win-8.1: get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/vpn-connection-fail-in-win-8.1.md
     - SSH keys: get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/ssh-keys.md
     - Pageant SSH agent: get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/pageant.md
     - PuTTY key generator: get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/puttygen.md
     - PuTTY: get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/putty.md
-  - Get Started with IT4Innovations-Accessing the Clusters-Graphical User Interface:
+  - GUI Access:
     - Introduction: get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/graphical-user-interface.md
     - X Window System: get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/x-window-system.md
     - VNC: get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc.md
     - Cygwin and x11 Forwarding: get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/cygwin-and-x11-forwarding.md
-  - Anselm Cluster Documentation:
+  - Anselm Cluster:
     - Introduction: anselm-cluster-documentation/introduction.md
     - Hardware Overview: anselm-cluster-documentation/hardware-overview.md
     - Environment and Modules: anselm-cluster-documentation/environment-and-modules.md
@@ -34,20 +31,20 @@ pages:
     - Remote visualization: anselm-cluster-documentation/remote-visualization.md
     - Network: anselm-cluster-documentation/network.md
     - PRACE User Support: anselm-cluster-documentation/prace.md
-  - Anselm Cluster Documentation-Accessing the Cluster:
+  - Anselm Cluster Access:
     - Outgoing Connections: anselm-cluster-documentation/accessing-the-cluster/outgoing-connections.md
     - VPN Access: anselm-cluster-documentation/accessing-the-cluster/vpn-access.md
     - Shell and Data Access: anselm-cluster-documentation/accessing-the-cluster/shell-and-data-access.md
-  - Anselm Cluster Documentation-Resource Allocation and Job Execution:
+  - Anselm Cluster Resource Allocation and Job Execution:
     - Introduction: anselm-cluster-documentation/resource-allocation-and-job-execution/introduction.md
     - Job Priority: anselm-cluster-documentation/resource-allocation-and-job-execution/job-priority.md
     - Job Submission and Execution: anselm-cluster-documentation/resource-allocation-and-job-execution/job-submission-and-execution.md
     - Capacity computing: anselm-cluster-documentation/resource-allocation-and-job-execution/capacity-computing.md
     - Resource allocation policy: anselm-cluster-documentation/resource-allocation-and-job-execution/resources-allocation-policy.md
-  - Anselm Cluster Documentation-Storage:
+  - Anselm Cluster Storage:
     - Cesnet Data Storage: anselm-cluster-documentation/storage/cesnet-data-storage.md
     - Storage: anselm-cluster-documentation/storage/storage.md
-  - Anselm Cluster Documentation-Software:
+  - Anselm Cluster Software:
     - COMSOL: anselm-cluster-documentation/software/comsol-multiphysics.md
     - ParaView: anselm-cluster-documentation/software/paraview.md
     - Compilers: anselm-cluster-documentation/software/compilers.md
@@ -59,19 +56,19 @@ pages:
     - Virtualization: anselm-cluster-documentation/software/kvirtualization.md
     - Java: anselm-cluster-documentation/software/java.md
     - Operating System: anselm-cluster-documentation/software/operating-system.md
-  - Anselm Cluster Documentation-Software-Intel Suite:
+  - Anselm Cluster Intel Suite:
     - Introduction: anselm-cluster-documentation/software/intel-suite/introduction.md
     - Intel MKL: anselm-cluster-documentation/software/intel-suite/intel-mkl.md
     - Intel Compilers: anselm-cluster-documentation/software/intel-suite/intel-compilers.md
     - Intel IPP: anselm-cluster-documentation/software/intel-suite/intel-integrated-performance-primitives.md
     - Intel TBB: anselm-cluster-documentation/software/intel-suite/intel-tbb.md
     - Intel Debugger: anselm-cluster-documentation/software/intel-suite/intel-debugger.md
-  - Anselm Cluster Documentation-Software-MPI:
+  - Anselm Cluster MPI:
     - Introduction: anselm-cluster-documentation/software/mpi/mpi.md
     - MPI4Py (MPI for Python): anselm-cluster-documentation/software/mpi/mpi4py-mpi-for-python.md
     - Running OpenMPI: anselm-cluster-documentation/software/mpi/Running_OpenMPI.md
     - Running MPICH2: anselm-cluster-documentation/software/mpi/running-mpich2.md
-  - Anselm Cluster Documentation-Software-Numerical Libraries:
+  - Anselm Cluster Numerical Libraries:
     - Intel numerical libraries: anselm-cluster-documentation/software/numerical-libraries/intel-numerical-libraries.md
     - PETSc: anselm-cluster-documentation/software/numerical-libraries/petsc.md
     - Trilinos: anselm-cluster-documentation/software/numerical-libraries/trilinos.md
@@ -79,11 +76,11 @@ pages:
     - GSL: anselm-cluster-documentation/software/numerical-libraries/gsl.md
     - MAGMA for Intel Xeon Phi: anselm-cluster-documentation/software/numerical-libraries/magma-for-intel-xeon-phi.md
     - HDF5: anselm-cluster-documentation/software/numerical-libraries/hdf5.md
-  - Anselm Cluster Documentation-Software-Omics Master:
+  - Anselm Cluster Omics Master:
     - Diagnostic component (TEAM): anselm-cluster-documentation/software/omics-master/diagnostic-component-team.md
     - Priorization component (BiERApp): anselm-cluster-documentation/software/omics-master/priorization-component-bierapp.md
     - Overview: anselm-cluster-documentation/software/omics-master/overview.md
-  - Anselm Cluster Documentation-Software-Debuggers:
+  - Anselm Cluster Debuggers:
     - Valgrind: anselm-cluster-documentation/software/debuggers/valgrind.md
     - PAPI: anselm-cluster-documentation/software/debuggers/papi.md
     - Allinea Forge (DDT,MAP): anselm-cluster-documentation/software/debuggers/allinea-ddt.md
@@ -96,16 +93,16 @@ pages:
     - Intel Performance Counter Monitor: anselm-cluster-documentation/software/debuggers/intel-performance-counter-monitor.md
     - Allinea Performance Reports: anselm-cluster-documentation/software/debuggers/allinea-performance-reports.md
     - Vampir: anselm-cluster-documentation/software/debuggers/vampir.md
-  - Anselm Cluster Documentation-Software-Numerical Languages:
+  - Anselm Cluster Numerical Languages:
     - Introduction: anselm-cluster-documentation/software/numerical-languages/introduction.md
     - R: anselm-cluster-documentation/software/numerical-languages/r.md
     - Matlab 2013-2014: anselm-cluster-documentation/software/numerical-languages/matlab_1314.md
     - Matlab: anselm-cluster-documentation/software/numerical-languages/matlab.md
     - Octave: anselm-cluster-documentation/software/numerical-languages/octave.md
-  - Anselm Cluster Documentation-Software-Chemistry:
+  - Anselm Cluster Chemistry:
     - Molpro: anselm-cluster-documentation/software/chemistry/molpro.md
     - NWChem: anselm-cluster-documentation/software/chemistry/nwchem.md
-  - Anselm Cluster Documentation-Software-Ansys:
+  - Anselm Cluster Ansys:
     - Introduction: anselm-cluster-documentation/software/ansys/ansys.md
     - ANSYS CFX: anselm-cluster-documentation/software/ansys/ansys-cfx.md
     - ANSYS LS-DYNA: anselm-cluster-documentation/software/ansys/ansys-ls-dyna.md
@@ -119,29 +116,29 @@ pages:
     - Hardware Overview: salomon/hardware-overview.md
     - Compute Nodes: salomon/compute-nodes.md
     - List of modules: salomon/list_of_modules.md
-  - Salomon Cluster Documentation-Accessing the Cluster:
+  - Salomon Cluster Access:
     - Outgoing connections: salomon/accessing-the-cluster/outgoing-connections.md
     - VPN Access: salomon/accessing-the-cluster/vpn-access.md
     - Accessing the Cluster: salomon/accessing-the-cluster/accessing-the-cluster.md
-  - Salomon Cluster Documentation-Network:
+  - Salomon Cluster Network:
     - Introduction: salomon/network/network.md
     - IB single-plane topology: salomon/network/ib-single-plane-topology.md
     - 7D Enhanced Hypercube: salomon/network/7d-enhanced-hypercube.md
-  - Salomon Cluster Documentation-Resource Allocation and Job Execution:
+  - Salomon Cluster Resource Allocation and Job Execution:
     - Introduction: salomon/resource-allocation-and-job-execution/introduction.md
     - Job scheduling: salomon/resource-allocation-and-job-execution/job-priority.md
     - Job submission and execution: salomon/resource-allocation-and-job-execution/job-submission-and-execution.md
     - Capacity computing: salomon/resource-allocation-and-job-execution/capacity-computing.md
     - Resources Allocation Policy: salomon/resource-allocation-and-job-execution/resources-allocation-policy.md
-  - Salomon Cluster Documentation-Storage:
+  - Salomon Cluster Storage:
     - CESNET Data Storage: salomon/storage/cesnet-data-storage.md
     - Storage: salomon/storage/storage.md
-  - Salomon Cluster Documentation-Software:
+  - Salomon Cluster Software:
     - Compilers: salomon/software/compilers.md
     - Intel Xeon Phi: salomon/software/intel-xeon-phi.md
     - Java: salomon/software/java.md
     - Operating System: salomon/software/operating-system.md
-  - Salomon Cluster Documentation-Software-Intel Suite:
+  - Salomon Cluster Intel Suite:
     - Introduction: salomon/software/intel-suite/intel-parallel-studio-introduction.md
     - Intel MKL: salomon/software/intel-suite/intel-mkl.md
     - Intel Compilers: salomon/software/intel-suite/intel-compilers.md
@@ -151,11 +148,11 @@ pages:
     - Intel Inspector: salomon/software/intel-suite/intel-inspector.md
     - Intel Trace Analyzer and Collector: salomon/software/intel-suite/intel-trace-analyzer-and-collector.md
     - Intel Advisor: salomon/software/intel-suite/intel-advisor.md
-  - Salomon Cluster Documentation-Software-MPI:
+  - Salomon Cluster MPI:
     - Introduction: salomon/software/mpi/mpi.md
     - MPI4Py (MPI for Python): salomon/software/mpi/mpi4py-mpi-for-python.md
     - Running OpenMPI: salomon/software/mpi/Running_OpenMPI.md
-  - Salomon Cluster Documentation-Software-Debuggers:
+  - Salomon Cluster Debuggers:
     - Introduction: salomon/software/debuggers/Introduction.md
     - Valgrind: salomon/software/debuggers/valgrind.md
     - Allinea Forge (DDT,MAP): salomon/software/debuggers/allinea-ddt.md
@@ -164,19 +161,19 @@ pages:
     - Aislinn: salomon/software/debuggers/aislinn.md
     - Allinea Performance Reports: salomon/software/debuggers/allinea-performance-reports.md
     - Vampir: salomon/software/debuggers/vampir.md
-  - Salomon Cluster Documentation-Software-Numerical Languages:
+  - Salomon Cluster Numerical Languages:
     - Introduction: salomon/software/numerical-languages/introduction.md
     - R: salomon/software/numerical-languages/r.md
     - Matlab: salomon/software/numerical-languages/matlab.md
     - Octave: salomon/software/numerical-languages/octave.md
-  - Salomon Cluster Documentation-Software-Chemistry:
+  - Salomon Cluster Chemistry:
     - Molpro: salomon/software/chemistry/molpro.md
     - Phono3py: salomon/software/chemistry/phono3py.md
     - NWChem: salomon/software/chemistry/nwchem.md
-  - Salomon Cluster Documentation-Software-Comsol:
+  - Salomon Cluster Comsol:
     - COMSOL: salomon/software/comsol/comsol-multiphysics.md
     - Licensing and Available Versions: salomon/software/comsol/licensing-and-available-versions.md
-  - Salomon Cluster Documentation-Software-Ansys:
+  - Salomon Cluster Ansys:
     - Introduction: salomon/software/ansys/ansys.md
     - Workbench: salomon/software/ansys/workbench.md
     - ANSYS CFX: salomon/software/ansys/ansys-cfx.md