added_phys_LMGC90_md

docs.it4i/salomon/software/phys/LMGC90.md

+# LMGC90
+
+## Introduction
+
+LMGC90 is a free and open source software dedicated to multiple physics simulation of discrete material and structures.
+More details on the capabilities of LMGC90 are available [here][Welcome].
+
+## Modules
+
+The LMGC90, version 2017.rc1 is available on Salomon via module LMGC90:
+
+```sh
+$ ml LMGC90
+```
+
+The module sets up environment variables and loads some other modules, required for running LMGC90 python scripts. This particular command loads the default module, which is LMGC90/2017.rc1-GCC-6.3.0-2.27, and modules: GCCcore/6.3.0, binutils/2.27-GCCcore-6.3.0, GCC/6.3.0-2.27, bzip2/1.0.6, zlib/1.2.8, ncurses/6.0, libreadline/6.3, Tcl/8.6.3, SQLite/3.8.8.1, Python/2.7.9.
+
+## Running generic example
+
+LMGC90 software main API is a Python module. It comes with a pre-processor written in Python. There are several examples that you can copy from the *examples* directory which is in */apps/all/LMGC90/2017.rc1-GCC-6.3.0-2.27* folder. Follow the next steps to run one of them.
+
+First choose an example and open a terminal in the directory of the copied example.
+
+### Generation
+
+To have more information on the pre-processor open in a web navigator the file [docs/pre_lmgc/index.html][pre_lmgc].
+
+To run an example, if there is no *DATBOX* directory or it is empty, run the Python generation script which is mostly called *gen_sample.py* with the command:
+
+```sh
+$ python gen_sample.py
+```
+
+You should now have a *DATBOX* directory containing all needed *.DAT* and *.INI* files.
+
+### Computation
+
+Now run the command script usually called *command.py*:
+
+```sh
+$ python command.py
+```
+
+To get more information on the structure on command scripts read the documentation opening the file [docs/chipy/index.html][chipy] in a web browser.
+Once the computation is done, you should get the directory *OUTBOX* containing ASCII output files, and a *DISPLAY* directory with output file readable by paraview.
+
+### Postprocessing and Visualization
+
+The ASCII files in *POSTPRO* directory result from the commands in the *DATBOX/POSTPRO.DAT* file. To have more information on how to use these features read the documents [manuals/LMGC90_Postpro.pdf][LMGC90_Postpro.pdf].
+The files inside the *DISPLAY* directory can be visualized with paraview. It is advised to read the *.pvd* files which ensure time consistency. The different output files are:
+
+- tacts: contactors of rigid objects
+- rigids: center of mass of rigid objects
+- inter: interactions
+- mecafe: mechanical mesh
+- therfe: thermal mesh
+- porofe: porous mechanical mesh
+- multife: multi-phasic fluid in porous media mesh
+
+[Welcome]: <http://www.lmgc.univ-montp2.fr/~dubois/LMGC90/Web/Welcome_!.html>
+[pre_lmgc]: <http://www.lmgc.univ-montp2.fr/%7Edubois/LMGC90/UserDoc/pre/index.html>
+[chipy]: <http://www.lmgc.univ-montp2.fr/%7Edubois/LMGC90/UserDoc/chipy/index.html>
+[LMGC90_Postpro.pdf]: <https://git-xen.lmgc.univ-montp2.fr/lmgc90/lmgc90_user/blob/2017.rc1/manuals/LMGC90_Postpro.pdf>