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@@ -4,16 +4,7 @@ To run a [job][1], computational resources for this particular job must be alloc
@@ -4,16 +4,7 @@ To run a [job][1], computational resources for this particular job must be alloc
Resources are allocated to the job in a fair-share fashion, subject to constraints set by the queue and resources available to the Project. [The Fair-share][3] ensures that individual users may consume approximately equal amount of resources per week. The resources are accessible via queues for queueing the jobs. The queues provide prioritized and exclusive access to the computational resources. Following queues are the most important:
Resources are allocated to the job in a fair-share fashion, subject to constraints set by the queue and resources available to the Project. [The Fair-share][3] ensures that individual users may consume approximately equal amount of resources per week. The resources are accessible via queues for queueing the jobs. The queues provide prioritized and exclusive access to the computational resources.
@@ -38,7 +29,13 @@ Use GNU Parallel and/or Job arrays when running (many) single core jobs.
@@ -38,7 +29,13 @@ Use GNU Parallel and/or Job arrays when running (many) single core jobs.
In many cases, it is useful to submit a huge (100+) number of computational jobs into the PBS queue system. A huge number of (small) jobs is one of the most effective ways to execute parallel calculations, achieving best runtime, throughput and computer utilization. In this chapter, we discuss the recommended way to run huge numbers of jobs, including **ways to run huge numbers of single core jobs**.
In many cases, it is useful to submit a huge (100+) number of computational jobs into the PBS queue system. A huge number of (small) jobs is one of the most effective ways to execute parallel calculations, achieving best runtime, throughput and computer utilization. In this chapter, we discuss the recommended way to run huge numbers of jobs, including **ways to run huge numbers of single core jobs**.
The `qgpu` queue on Karolina takes advantage of the division of nodes into vnodes. Accelerated node equipped with two 64-core processors and eight GPU cards is treated as eight vnodes, each containing 16 CPU cores and 1 GPU card. Vnodes can be allocated to jobs individually – through precise definition of resource list at job submission, you may allocate varying number of resources/GPU cards according to your needs.
@@ -46,6 +43,7 @@ Read more on [Capacity Computing][6] page.
@@ -46,6 +43,7 @@ Read more on [Capacity Computing][6] page.