Content revision2

docs.it4i/anselm-cluster-documentation/capacity-computing.md

@@ -12,15 +12,17 @@ However, executing huge number of jobs via the PBS queue may strain the system.
 
 -   Use [Job arrays](capacity-computing/#job-arrays) when running huge number of [multithread](capacity-computing/#shared-jobscript-on-one-node) (bound to one node only) or multinode (multithread across several nodes) jobs
 -   Use [GNU parallel](capacity-computing/#gnu-parallel) when running single core jobs
--   Combine[GNU parallel with Job arrays](capacity-computing/#combining-job-arrays-and-gnu-parallel) when running huge number of single core jobs
+-   Combine [GNU parallel with Job arrays](capacity-computing/#job-arrays-and-gnu-parallel) when running huge number of single core jobs
 
 Policy
 ------
+
 1.  A user is allowed to submit at most 100 jobs. Each job may be [a job array](capacity-computing/#job-arrays).
 2.  The array size is at most 1000 subjobs.
 
 Job arrays
 --------------
+
 !!! Note "Note"
 	Huge number of jobs may be easily submitted and managed as a job array.
 
@@ -146,10 +148,11 @@ Display status information for all user's subjobs.
 $ qstat -u $USER -tJ
 ```
 
-Read more on job arrays in the [PBSPro Users guide](../../pbspro-documentation/sitemap/).
+Read more on job arrays in the [PBSPro Users guide](../../pbspro-documentation/).
 
 GNU parallel
 ----------------
+
 !!! Note "Note"
 	Use GNU parallel to run many single core tasks on one node.
 
@@ -220,7 +223,8 @@ In this example, we submit a job of 101 tasks. 16 input files will be processed
 Please note the #PBS directives in the beginning of the jobscript file, dont' forget to set your valid PROJECT_ID and desired queue.
 
 Job arrays and GNU parallel
--------------------------------
+---------------------------
+
 !!! Note "Note"
 	Combine the Job arrays and GNU parallel for best throughput of single core jobs
 
@@ -305,6 +309,7 @@ Please note the #PBS directives in the beginning of the jobscript file, dont' fo
 
 Examples
 --------
+
 Download the examples in [capacity.zip](capacity.zip), illustrating the above listed ways to run huge number of jobs. We recommend to try out the examples, before using this for running production jobs.
 
 Unzip the archive in an empty directory on Anselm and follow the instructions in the README file