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Lumi tweaking

Merged Jan Siwiec requested to merge lumi-tweaking into master
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@@ -4,10 +4,17 @@ Below are the guides for selected [LUMI Software modules][1]:
@@ -4,10 +4,17 @@ Below are the guides for selected [LUMI Software modules][1]:
## How to Run PyTorch on Lumi-G AMD GPU Accelerators
## How to Run PyTorch on Lumi-G AMD GPU Accelerators
 
[PyTorch][8] is an optimized tensor library for deep learning using GPUs and CPUs.
 
[https://docs.lumi-supercomputer.eu/software/packages/pytorch/][2]
[https://docs.lumi-supercomputer.eu/software/packages/pytorch/][2]
## How to Run Gromacs on Lumi-G AMD GPU Accelerators
## How to Run Gromacs on Lumi-G AMD GPU Accelerators
 
Gromacs is a very efficient engine to perform molecular dynamics simulations
 
and energy minimizations particularly for proteins.
 
However, it can also be used to model polymers, membranes and e.g. coarse grained systems.
 
It also comes with plenty of analysis scripts.
 
[https://docs.csc.fi/apps/gromacs/#example-batch-script-for-lumi-full-gpu-node][3]
[https://docs.csc.fi/apps/gromacs/#example-batch-script-for-lumi-full-gpu-node][3]
## AMD Infinity Hub
## AMD Infinity Hub
@@ -19,16 +26,23 @@ including code built recipes for code customization.
@@ -19,16 +26,23 @@ including code built recipes for code customization.
## GPU-Accelerated Applications With AMD INSTINCT™ Accelerators Enabled by AMD ROCm™
## GPU-Accelerated Applications With AMD INSTINCT™ Accelerators Enabled by AMD ROCm™
 
The AMD Infinity Hub contains a collection of advanced software containers
 
and deployment guides for HPC and AI applications,
 
enabling researchers, scientists, and engineers to speed up their time to science.
 
[https://www.amd.com/system/files/documents/gpu-accelerated-applications-catalog.pdf][5]
[https://www.amd.com/system/files/documents/gpu-accelerated-applications-catalog.pdf][5]
## CSC Installed Software
## CSC Installed Software
Codes enabled by CSC and available for all, including PyTorch, TensorFlow, JAX, GROMACS, and others.
The link below contains a list of codes enabled by CSC
 
and available for all, including PyTorch, TensorFlow, JAX, GROMACS, and others.
[https://docs.lumi-supercomputer.eu/software/local/csc/][6]
[https://docs.lumi-supercomputer.eu/software/local/csc/][6]
## Installation of SW via Conda
## Installation of SW via Conda
 
Conda is an open-source, cross-platform,language-agnostic package manager and environment management system.
 
[https://docs.lumi-supercomputer.eu/software/installing/container-wrapper/][7]
[https://docs.lumi-supercomputer.eu/software/installing/container-wrapper/][7]
[1]: https://lumi-supercomputer.github.io/LUMI-EasyBuild-docs/
[1]: https://lumi-supercomputer.github.io/LUMI-EasyBuild-docs/
@@ -38,3 +52,4 @@ Codes enabled by CSC and available for all, including PyTorch, TensorFlow, JAX,
@@ -38,3 +52,4 @@ Codes enabled by CSC and available for all, including PyTorch, TensorFlow, JAX,
[5]: https://www.amd.com/system/files/documents/gpu-accelerated-applications-catalog.pdf
[5]: https://www.amd.com/system/files/documents/gpu-accelerated-applications-catalog.pdf
[6]: https://docs.lumi-supercomputer.eu/software/local/csc/
[6]: https://docs.lumi-supercomputer.eu/software/local/csc/
[7]: https://docs.lumi-supercomputer.eu/software/installing/container-wrapper/
[7]: https://docs.lumi-supercomputer.eu/software/installing/container-wrapper/
 
[8]: https://pytorch.org/docs/stable/index.html
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