Anselm ... GNU/6.3.0/2.27

o/OpenFOAM/OpenFOAM-4.1-intel-2017a.eb

+name = 'OpenFOAM'
+version = '4.1'
+
+homepage = 'http://www.openfoam.com/'
+description = """OpenFOAM is a free, open source CFD software package.
+ OpenFOAM has an extensive range of features to solve anything from complex fluid flows
+ involving chemical reactions, turbulence and heat transfer,
+ to solid dynamics and electromagnetics."""
+
+toolchain = {'name': 'intel', 'version': '2017a'}
+toolchainopts = {'cstd': 'c++11'}
+
+source_urls = ['https://github.com/OpenFOAM/OpenFOAM-%(version_major)s.x/archive']
+sources = ['version-%(version)s.tar.gz']
+
+checksums = ['318a446c4ae6366c7296b61184acd37c']
+
+patches = ['OpenFOAM-%(version)s-cleanup.patch']
+
+dependencies = [
+    ('libreadline', '6.3'),
+    ('ncurses', '6.0'),
+    # OpenFOAM requires 64 bit METIS using 32 bit indexes (array indexes)
+    ('METIS', '5.1.0', '', True),
+    ('SCOTCH', '6.0.4'),
+    ('CGAL', '4.8.1'),
+    ('ParaView', '5.1.2', '-mpi'),
+]
+
+builddependencies = [
+    ('Bison', '3.0.4'),
+    ('CMake', '3.7.2'),
+    ('flex', '2.6.3', '', ('GCCcore', '6.3.0')),
+]
+
+moduleclass = 'cae'

o/OpenMPI/OpenMPI-1.10.2-GCC-4.9.3-2.25.eb

@@ -13,11 +13,16 @@ source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/d
 
 dependencies = [('hwloc', '1.11.2')]
 
+builddependencies = [
+            ('Java', '1.8.0_51', '', True)
+]
+
 configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-verbs '
 configopts += '--enable-mpirun-prefix-by-default '  # suppress failure modes in relation to mpirun path
 configopts += '--with-hwloc=$EBROOTHWLOC '  # hwloc support
 configopts += '--disable-dlopen '  # statically link component, don't do dynamic loading
 configopts += '--with-tm=/opt/pbs/default '  # Enable PBS
+configopts += '--enable-mpi-java ' # Java support RT#4090
 
 # for PBS Pro 13
 preconfigopts = 'export LIBS="-ldl" && '

o/osm2pgsql/osm2pgsql-0.92.0-intel-2017a.eb

+easyblock = 'CMakeMake'
+
+name = 'osm2pgsql'
+version = '0.92.0'
+
+homepage = 'http://wiki.openstreetmap.org/wiki/Osm2pgsql'
+description = "osm2pgsql is a command-line based program that converts OpenStreetMap data to postGIS-enabled PostgreSQL databases"
+
+toolchain = {'name': 'intel', 'version': '2017a' }
+
+source_urls = ['https://github.com/openstreetmap/osm2pgsql/archive/']
+sources = ['%(version)s.tar.gz']
+
+checksums = ['1aee8d5fcea0e51662640a886a6818c7']
+
+patches = ['osm2pgsql-%(version)s_fix.patch']
+
+files_to_copy = ['%(builddir)s/osm2pgsql']
+
+configopts = '-DCMAKE_CXX_COMPILER=icpc -DCMAKE_CXX_FLAGS=-std=c++11'
+
+separate_build_dir = True
+
+builddependencies = [
+  ('CMake', '3.7.2', '', True)
+]
+
+dependencies = [ 
+    ('expat', '2.1.0', '', True), 
+    ('PROJ_4', '4.9.2', '', True), 
+    ('GEOS', '3.5.0', '', True), 
+    ('zlib', '1.2.11', '', True), 
+    ('Boost', '1.63.0'),
+    ('Lua', '5.1.4-8', '', True)
+]
+
+sanity_check_paths = {
+    'files': ['bin/osm2pgsql'],
+    'dirs': [],
+}
+                                                                                                                                                   
+moduleclass = 'tools'

o/osm2pgsql/osm2pgsql-0.92.0_fix.patch

+# Set prefix path to include required libraries from easybuild paths
+diff -ru osm2pgsql-0.92.0/CMakeLists.txt osm2pgsql-0.92.0_patched/CMakeLists.txt
+--- osm2pgsql-0.92.0/CMakeLists.txt	2016-12-16 10:43:19.000000000 +0100
++++ osm2pgsql-0.92.0_patched/CMakeLists.txt	2017-03-13 15:33:11.939403214 +0100
+@@ -6,6 +6,8 @@
+ 
+ project(osm2pgsql)
+ 
++set(CMAKE_PREFIX_PATH "${CMAKE_PREFIX_PATH};$ENV{EBROOTGEOS};$ENV{EBROOTPROJ_4};$ENV{EBROOTLUA};$ENV{EBROOTZLIB};$ENV{EBROOTBOOST};$ENV{EBROOTEXPATH}")
++
+ list(APPEND CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/cmake")
+ 
+ set(DATA_DIR \"${CMAKE_INSTALL_PREFIX}/share/osm2pgsql\")

p/PROJ_4/PROJ_4-4.9.2.eb

+name = 'PROJ_4'
+version = '4.9.2'
+
+easyblock = 'ConfigureMake'
+
+homepage = 'http://proj.osgeo.org'
+description = """PROJ.4 - Cartographic Projections Library originally written by Gerald Evenden then of the USGS.
+"""
+
+toolchain = {'name': 'dummy', 'version': ''}
+
+sources = ['%(version)s.tar.gz']
+source_urls = ['https://github.com/OSGeo/proj.4/archive/']
+
+moduleclass = 'geo'

p/ParaView/ParaView-5.1.2-intel-2017a-mpi.eb

+easyblock = 'CMakeMake'
+
+name = 'ParaView'
+version = '5.1.2'
+versionsuffix = '-mpi'
+
+homepage = "http://www.paraview.org"
+description = "ParaView is a scientific parallel visualizer."
+
+toolchain = {'name': 'intel', 'version': '2017a'}
+toolchainopts = {'pic': True, 'usempi': True}
+
+download_suffix = 'download.php?submit=Download&version=v%(version_major_minor)s&type=source&os=all&downloadFile='
+source_urls = ['http://www.paraview.org/paraview-downloads/%s' % download_suffix]
+sources = ["ParaView-v%(version)s.tar.gz"]
+
+dependencies = [
+    ('X11', '20160819'),
+    ('Mesa', '12.0.2'),
+    ('libGLU', '9.0.0'),
+    ('Qt', '4.8.7'),
+    ('zlib', '1.2.11', '', True),
+    ('HDF5', '1.8.17'),
+    ('Python', '2.7.12'),
+]
+
+builddependencies = [('CMake', '3.7.2', '', True)]
+
+separate_build_dir = True
+
+configopts = '-DPARAVIEW_INSTALL_DEVELOPMENT_FILES=ON -DVTK_OPENGL_HAS_OSMESA=ON -DPARAVIEW_USE_MPI=ON '
+configopts += '-DOPENGL_INCLUDE_DIR=$EBROOTMESA/include -DOPENGL_gl_LIBRARY=$EBROOTMESA/lib/libGL.%s ' % SHLIB_EXT
+configopts += '-DOSMESA_INCLUDE_DIR=$EBROOTMESA/include -DOSMESA_LIBRARY=$EBROOTMESA/lib/libOSMesa.%s ' % SHLIB_EXT
+configopts += '-DOPENGL_glu_LIBRARY=$EBROOTLIBGLU/lib/libGLU.%s ' % SHLIB_EXT
+configopts += '-DVTK_USE_SYSTEM_HDF5=ON -DPARAVIEW_ENABLE_PYTHON=ON -DBUILD_SHARED_LIBS=ON '
+# if you want to build server only Paraview, uncomment the following line:
+# configopts += '-DVTK_USE_X=OFF '
+
+# Without internet connection turn off testing (uncomment the following line)
+configopts += '-DBUILD_TESTING=OFF '
+# Or consult https://gitlab.kitware.com/vtk/vtk/blob/master/Documentation/dev/git/data.md
+# and download ExternalData to $EASYBUILD_SOURCEPATH and adjust -DExternalData_OBJECT_STORES accordingly
+# Without internet connection, comment the following two lines (configopts and prebuildopts)
+configopts += '-DExternalData_OBJECT_STORES=%(builddir)s/ExternalData '
+# The ParaView server can be cranky, test downloads are quite often failing, especially in the case
+# of parallel downloads. Using ; insted of && gives a second chance to download the test files, if the
+# first serial attempt would fail.
+prebuildopts = 'make VTKData ;'
+
+moduleclass = 'vis'

q/QBOX/QBOX-r140b-foss-2016a.eb

+easyblock = 'MakeCp'
+
+name = 'QBOX'
+version = 'r140b'
+
+homepage = 'https://asc.llnl.gov/CORAL-benchmarks/#qbox'
+description = 'QBOX benchmark, part of CORAL suite'
+
+toolchain = {'name': 'foss', 'version': '2016a' }
+toolchainopts = {'usempi': True}
+
+source_urls = ['https://asc.llnl.gov/CORAL-benchmarks/Science/']
+sources = ['qball_%(version)s.tgz']
+
+checksums = ['3eef50f376b02f9d569e0d6e761847ce']
+
+patches = ['QBOX-%(version)s_fix.patch']
+
+files_to_copy = [(['trunk/src/qb-linux_x86_64_intel'], 'bin')]
+
+start_dir = 'trunk/src'
+
+sanity_check_paths = {
+    'files': ['bin/qb-linux_x86_64_intel'],
+    'dirs': [],
+}
+
+moduleclass = 'tools'

q/QBOX/QBOX-r140b_fix.patch

+# MPI_Comm is a typedef struct ompi_communicator_t *MPI_Comm.
+# Csys2blacs_handle is called only here and returns a hardcoded zero
+# this patch does not alter the behavior 
+# Martin Golasowski, martin.golasowski@vsb.cz, IT4Innovations 2017
+diff -ru qball_r140/trunk/src/Context.C qball_r140_working/trunk/src/Context.C
+--- qball_r140/trunk/src/Context.C	2013-04-18 20:31:13.000000000 +0200
++++ qball_r140_working/trunk/src/Context.C	2017-03-14 19:36:35.998218396 +0100
+@@ -613,7 +613,7 @@
+   char order = 'C';
+   MPI_Comm_size(comm_,&nprocs);
+   MPI_Comm_rank(comm_,&mype_);
+-  int bhandle = Csys2blacs_handle(comm_);
++  int bhandle = 0;
+   ictxt_ = bhandle;
+   Cblacs_gridinit( &ictxt_, &order, nprow, npcol );
+ 
+diff -ru qball_r140/trunk/src/Makefile qball_r140_working/trunk/src/Makefile
+--- qball_r140/trunk/src/Makefile	2013-07-03 22:10:55.000000000 +0200
++++ qball_r140_working/trunk/src/Makefile	2017-03-14 19:15:26.870687572 +0100
+@@ -7,7 +7,19 @@
+ 
+ # If defined, use architecture file set with ARCH variable
+ ARCH ?= $(ARCHGUESS)
+-include $(ARCH).mk
++PLT=LINUX_X86_64_GNU
++FFTWDIR=${EBROOTFFTW}
++FFTWLIB=$(FFTWDIR)/lib/libfftw.a
++SCALAPACK_DIR = ${EBROOTSCALAPACK}
++SCALAPACKLIB  = $(SCALAPACK_DIR)/lib/libscalapack.a
++BLASDIR = ${EBROOTOPENBLAS}
++DFLAGS += -DUSE_CSTDIO_LFS -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64
++INCLUDE = -I$(FFTWDIR)/include
++CXXFLAGS= -DUSE_MPI -DSCALAPACK -DADD_ -D$(PLT) $(INCLUDE) $(DFLAGS)
++LD = ${CXX}
++LIBPATH = -L$(FFTWDIR) -L$(BLASDIR) -L$(EBROOTOPENMPI) -L$(SCALAPACK_DIR)/lib
++LIBS =  -lscalapack -fopenmp -lopenblas -lgfortran
++LDFLAGS = $(LIBPATH) $(LIBS) 
+ #------------------------------------------------------------------------------
+ #
+ TESTEXECS=testMatrix testFTGrid testGridFunction testBasis \

q/Qt5/Qt5-5.7.0-intel-2017a.eb

+easyblock = 'EB_Qt'
+
+name = 'Qt5'
+version = '5.7.0'
+
+homepage = 'http://qt.io/'
+description = "Qt is a comprehensive cross-platform C++ application framework."
+
+toolchain = {'name': 'intel', 'version': '2017a'}
+
+source_urls = [
+    'http://download.qt.io/official_releases/qt/%(version_major_minor)s/%(version)s/single/',
+    'http://download.qt.io/archive/qt/%(version_major_minor)s/%(version)s/single/'
+]
+sources = ['qt-everywhere-opensource-src-%(version)s.tar.xz']
+
+builddependencies = [
+    ('fixesproto', '5.0'),
+    ('glproto', '1.4.17'),
+    ('inputproto', '2.3.1'),
+    ('kbproto', '1.0.7'),
+    ('libpthread-stubs', '0.3'),
+    ('pkg-config', '0.29.1'),
+    ('xcb-proto', '1.11', '', True),
+    ('xextproto', '7.3.0'),
+    ('xorg-macros', '1.19.0'),
+    ('xproto', '7.0.28'),
+    ('xtrans', '1.3.5'),
+]
+
+dependencies = [
+    ('GLib', '2.48.0'),
+    ('libX11', '1.6.3'),
+    ('libXt', '1.1.5'),
+    ('libXi', '1.7.6'),
+    ('xcb-util', '0.4.0'),
+    ('xcb-util-image', '0.4.0'),
+    ('xcb-util-keysyms', '0.4.0'),
+    ('xcb-util-renderutil', '0.3.9'),
+    ('xcb-util-wm', '0.4.1'),
+    ('libxkbcommon', '0.6.1'),
+    ('libXrender', '0.9.9'),
+    ('fontconfig', '2.11.95'),
+    ('freetype', '2.6.3'),
+    ('libXfixes', '5.0.1'),
+    ('libXcursor', '1.1.14'),
+    ('libXinerama', '1.1.3'),
+    ('libXrandr', '1.5.0'),
+    ('libpng', '1.6.21'),
+    ('libGLU', '9.0.0', '-Mesa-11.2.1'),
+]
+
+# qtgamepad needs recent kernel/libevdev (fails on RHEL 6.x)
+configopts = '-skip qtgamepad'
+
+moduleclass = 'devel'