| [HDF5](http://www.hdfgroup.org/HDF5/) | HDF5 is a unique technology suite that makes possible the management of extremely large and local_complex data collections. |
| [HDF5](http://www.hdfgroup.org/HDF5/) | HDF5 is a unique technology suite that makes possible the management of extremely large and local_complex data collections. |
| [LAME](http://lame.sourceforge.net/) | LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL. |
| [LAME](http://lame.sourceforge.net/) | LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL. |
| [libPSML](https://launchpad.net/libpsml) | A library to handle PSML, the pseudopotential markup language. |
| [libPSML](https://launchpad.net/libpsml) | A library to handle PSML, the pseudopotential markup language. |
| [MEDCoupling](https://www.salome-platform.org) | The MEDCoupling tool gathers several powerful functionalities around the input and output data of simulation codes (meshes and fields mainly). |
| [medfile](https://www.salome-platform.org) | The MED file format is a specialization of the HDF5 standard. |
| [mkl-service](https://github.com/IntelPython/mkl-service) | Python hooks for Intel(R) Math Kernel Library runtime control settings. |
| [mkl-service](https://github.com/IntelPython/mkl-service) | Python hooks for Intel(R) Math Kernel Library runtime control settings. |
| [netCDF](http://www.unidata.ucar.edu/software/netcdf/) | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. |
| [netCDF](http://www.unidata.ucar.edu/software/netcdf/) | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. |
| [netCDF-Fortran](https://www.unidata.ucar.edu/software/netcdf/) | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. |
| [netCDF-Fortran](https://www.unidata.ucar.edu/software/netcdf/) | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. |
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| [ROCT-Thunk-Interface](https://github.com/RadeonOpenCompute/ROCT-Thunk-Interface) | The user-mode API interfaces used to interact with the ROCk driver |
| [ROCT-Thunk-Interface](https://github.com/RadeonOpenCompute/ROCT-Thunk-Interface) | The user-mode API interfaces used to interact with the ROCk driver |
| [s3cmd](https://s3tools.org/s3cmd) | S3cmd is a free command line tool and client for uploading, retrieving and managing data in Amazon S3 and other cloud storage service providers that use the S3 protocol, such as Google Cloud Storage or DreamHost DreamObjects. It is best suited for power users who are familiar with command line programs. It is also ideal for batch scripts and automated backup to S3, triggered from cron, etc. |
| [s3cmd](https://s3tools.org/s3cmd) | S3cmd is a free command line tool and client for uploading, retrieving and managing data in Amazon S3 and other cloud storage service providers that use the S3 protocol, such as Google Cloud Storage or DreamHost DreamObjects. It is best suited for power users who are familiar with command line programs. It is also ideal for batch scripts and automated backup to S3, triggered from cron, etc. |
| [s5cmd](https://pypi.python.org/pypi/s3cmd) | s5cmd is a very fast S3 and local filesystem execution tool. It comes with support for a multitude of operations including tab completion and wildcard support for files, which can be very handy for your object storage workflow while working with large number of files. There are already other utilities to work with S3 and similar object storage services, thus it is natural to wonder what s5cmd has to offer that others don't. In short, s5cmd offers a very fast speed. Thanks to Joshua Robinson for his study and experimentation on s5cmd; to quote his medium post: For uploads, s5cmd is 32x faster than s3cmd and 12x faster than aws-cli. For downloads, s5cmd can saturate a 40Gbps link (~4.3 GB/s), whereas s3cmd and aws-cli can only reach 85 MB/s and 375 MB/s respectively. If you would like to know more about performance of s5cmd and the reasons for its fast speed, refer to benchmarks section |
| [s5cmd](https://pypi.python.org/pypi/s3cmd) | s5cmd is a very fast S3 and local filesystem execution tool. It comes with support for a multitude of operations including tab completion and wildcard support for files, which can be very handy for your object storage workflow while working with large number of files. There are already other utilities to work with S3 and similar object storage services, thus it is natural to wonder what s5cmd has to offer that others don't. In short, s5cmd offers a very fast speed. Thanks to Joshua Robinson for his study and experimentation on s5cmd; to quote his medium post: For uploads, s5cmd is 32x faster than s3cmd and 12x faster than aws-cli. For downloads, s5cmd can saturate a 40Gbps link (~4.3 GB/s), whereas s3cmd and aws-cli can only reach 85 MB/s and 375 MB/s respectively. If you would like to know more about performance of s5cmd and the reasons for its fast speed, refer to benchmarks section |
| [SALOME_CONFIGURATION](https://www.salome-platform.org) | Configuration files and other utilities for SALOME platform. |
| [SavvySuite](https://github.com/rdemolgen/SavvySuite/) | Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes. This software was written by Matthew Wakeling at the University of Exeter, and was presented at the 2017 ASHG meeting in Orlando, Florida. To cite this software, please use the following references. For SavvyCNV, use: https://www.biorxiv.org/content/10.1101/617605v1 For all other parts of SavvySuite, cite the ASHG conference presentation: Wakeling, MN, De Franco E, Hattersley AT, Ellard S. Making the most of targeted sequencing: detecting CNVs and homozygous regions using offtarget reads with SavvyCNV. 67th Annual Meeting of the American Society of Human Genetics. Orlando, FL; 17–21 October 2017. and if desired, cite this web site too: Wakeling MN. SavvySuite. 2018. https://github.com/rdemolgen/SavvySuite. |
| [SavvySuite](https://github.com/rdemolgen/SavvySuite/) | Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes. This software was written by Matthew Wakeling at the University of Exeter, and was presented at the 2017 ASHG meeting in Orlando, Florida. To cite this software, please use the following references. For SavvyCNV, use: https://www.biorxiv.org/content/10.1101/617605v1 For all other parts of SavvySuite, cite the ASHG conference presentation: Wakeling, MN, De Franco E, Hattersley AT, Ellard S. Making the most of targeted sequencing: detecting CNVs and homozygous regions using offtarget reads with SavvyCNV. 67th Annual Meeting of the American Society of Human Genetics. Orlando, FL; 17–21 October 2017. and if desired, cite this web site too: Wakeling MN. SavvySuite. 2018. https://github.com/rdemolgen/SavvySuite. |
| [SDE](https://software.intel.com/en-us/articles/intel-software-development-emulator) | Intel Software Development Emulator is a pintool that enables the development of applications using instruction set extensions that are not currently implemented in hardware. |
| [SDE](https://software.intel.com/en-us/articles/intel-software-development-emulator) | Intel Software Development Emulator is a pintool that enables the development of applications using instruction set extensions that are not currently implemented in hardware. |
| [SoX](https://sourceforge.net/projects/sox) | SoX is the Swiss Army Knife of sound processing utilities. It can convert audio files to other popular audio file types and also apply sound effects and filters during the conversion. |
| [SoX](https://sourceforge.net/projects/sox) | SoX is the Swiss Army Knife of sound processing utilities. It can convert audio files to other popular audio file types and also apply sound effects and filters during the conversion. |
