Tue, 03 Oct 2023 12:45:02 +0200

barbora.csv

 Advisor/2021.4.0-GCCcore-10.3.0,2
 AlphaFold/2.3.1-foss-2022a,2
+AlphaFold/2.3.4-foss-2022a-CUDA-11.7.0-ColabFold,2
 Amber/20.11-foss-2020b-AmberTools-21.3,2
 Amber/20.11-fosscuda-2020b-AmberTools-21.3,2
 Anaconda3/2021.05,2
@@ -955,6 +956,7 @@ OpenBLAS/0.3.21-GCC-12.2.0,2
 OpenBLAS/0.3.9-GCC-9.3.0,2
 OpenFOAM/9-foss-2021a,2
 OpenMM/8.0.0-foss-2022a,2
+OpenMM/8.0.0-foss-2022a-CUDA-11.7.0,2
 OpenMolcas/23.06-intel-2022a,2
 OpenMPI/3.1.4-GCC-10.2.0,2
 OpenMPI/4.0.3-GCC-9.3.0,2

barbora.md

@@ -3,7 +3,7 @@
 
 | Module | Description |
 | ------ | ----------- |
-| [AlphaFold](https://deepmind.com/research/case-studies/alphafold) | AlphaFold can predict protein structures with atomic accuracy even where no similar structure is known |
+| [AlphaFold](https://github.com/sokrypton/alphafold) | AlphaFold can predict protein structures with atomic accuracy even where no similar structure is known. This package of AlphaFold contains patches for ColabFold. |
 | [Biopython](https://www.biopython.org) | Biopython is a set of freely available tools for biological computation written in Python by an international team of developers. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. |
 | [BLAST](http://blast.ncbi.nlm.nih.gov/) | Basic Local Alignment Search Tool, or BLAST, is an algorithm for local_comparing primary biological sequence information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences. |
 | [BWA](http://bio-bwa.sourceforge.net/) | Burrows-Wheeler Aligner (BWA) is an efficient program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome. |