| [xproto](http://www.freedesktop.org/wiki/Software/xlibs) | X protocol and ancillary headers. |
| [xtrans](http://www.freedesktop.org/wiki/Software/xlibs) | xtrans includes a number of routines to make X implementations transport-independent; at time of writing, it includes support for UNIX sockets, IPv4, IPv6, and DECnet. |
## Engineering
| Module | Description |
| ------ | ----------- |
| adams | |
| beopest | |
| blender | |
| Code_Saturne | |
| comsol | |
| digimat | |
| Discovery_Studio | |
| dytran | |
| fds | |
| hypermesh | |
| hyperworks | |
| lsdyna | |
| lsprepost | |
| lux | |
| marc | |
| maxwell | |
| modflow-2005 | |
| modflow-nwt | |
| nastran | |
| openfoam | |
| paraview | |
| pest | |
| wien2k | |
## Environments
| Module | Description |
| ------ | ----------- |
| bullxde | |
| PrgEnv-gnu | |
| PrgEnv-intel | |
## Geo
| Module | Description |
...
...
@@ -153,6 +189,11 @@
| [PHREEQC](https://wwwbrr.cr.usgs.gov/projects/GWC_coupled/phreeqc/) | A Computer Program for Speciation, Batch-Reaction, One-Dimensional Transport, and Inverse Geochemical Calculations |
| [PROJ_4](http://proj.osgeo.org) | PROJ.4 - Cartographic Projections Library originally written by Gerald Evenden then of the USGS. |
## Init
| Module | Description |
| ------ | ----------- |
## Lang
| Module | Description |
...
...
@@ -232,6 +273,35 @@
| [Tensorflow](https://www.tensorflow.org/) | An open-source software library for Machine Intelligence |
| [zlib](http://www.zlib.net/) | zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system. |
## Libraries
| Module | Description |
| ------ | ----------- |
| adios | |
| dataspaces | |
| fftw2 | |
| fftw2-mpi | |
| fftw3 | |
| fftw3-mpi | |
| gpi2 | |
| hdf5 | |
| hdf5-parallel | |
| ipp | |
| magma | |
| mkl | |
| mxml | |
| netcdf | |
| netcdf-cxx | |
| netcdf-fortran | |
| netcdf-parallel | |
| opencl-rt | |
| opencl-sdk | |
| petsc | |
| plasma | |
| szip | |
| tbb | |
| trilinos | |
## Math
| Module | Description |
...
...
@@ -265,7 +335,7 @@
| [impi](http://software.intel.com/en-us/intel-mpi-library/) | The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification. |
| lam | Sets up intel MPI in your enviornment. |
| [MPICH](http://www.mpich.org/) | MPICH v3.x is an open source high-performance MPI 3.0 implementation. It does not support InfiniBand (use MVAPICH2 with InfiniBand devices). |
| mvapich2 | |
| mvapich2 | Sets up MPI in your environment. |
| [OpenMPI](http://www.open-mpi.org/) | The Open MPI Project is an open source MPI-2 implementation. |
## Numlib
...
...
@@ -293,6 +363,20 @@
| [SuiteSparse](http://faculty.cse.tamu.edu/davis/suitesparse.html) | SuiteSparse is a collection of libraries manipulate sparse matrices. |
| [Trilinos](http://trilinos.sandia.gov/) | The Trilinos Project is an effort to develop algorithms and enabling technologies within an object-oriented software framework for the solution of large-scale, complex multi-physics engineering and scientific problems. A unique design feature of Trilinos is its focus on packages. |
## Omics
| Module | Description |
| ------ | ----------- |
| fastqc | |
| gatk | |
| hpg-aligner | |
| hpg-fastq | |
| hpg-variant | |
| ngsPipeline | |
| picard | |
| samtools | |
| snpEff | |
## Perf
| Module | Description |
...
...
@@ -320,6 +404,13 @@
| [Siesta](http://departments.icmab.es/leem/siesta) | SIESTA is both a method and its computer program implementation, to perform efficient electronic structure calculations and ab initio molecular dynamics simulations of molecules and solids. This version si compiled with OpenMP and MPI support. |
| [VASP](http://www.vasp.at) | The Vienna Ab initio Simulation Package (VASP) is a computer program for atomic scale materials modelling, e.g. electronic structure calculations and quantum-mechanical molecular dynamics, from first principles. To use VASP, You need academic licenses from University of Wiena. Follow the instructions https://www.vasp.at/index.php/faqs. Then send us please a list of authorized users and their ID for which you need this access. Please use only http://support.it4i.cz/rt. We are responsible to verify your licenses. After succesfull verification You will be granted to use VASP in our enviroment. |
