Commit ea599a37 authored by Lukáš Krupčík's avatar Lukáš Krupčík
Browse files

Thu, 31 Mar 2022 10:56:07 +0200

parent 5440cd50
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| [picard]( | A set of tools (in Java) for working with next generation sequencing data in the BAM format. |
| [snpEff]( | SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of genetic variants (such as amino acid changes). |
## Cae
| Module | Description |
| ------ | ----------- |
| [DualSPHysics]( | DualSPHysics is based on the Smoothed Particle Hydrodynamics model named SPHysics. The code is developed to study free-surface flow phenomena where Eulerian methods can be difficult to apply, such as waves or impact of dam-breaks on off-shore structures. DualSPHysics is a set of C++, CUDA and Java codes designed to deal with real-life engineering problems. |
## Chem
| Module | Description |
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| [networkx]( | NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks. |
| [Ninja]( | Ninja is a small build system with a focus on speed. |
| [numactl]( | The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program. |
| [OS7]( | This module activates the installed modules from RHEL7 or CentOS7. Old modules may be incompatible with the new RHEL8 OS. Users using these modules use them at their own risk without warranty from IT4Innovations. |
| [OS8]( | This module activates the installed modules on RHEL8. |
| [parallel]( | parallel: Build and execute shell commands in parallel |
| [pigz]( | pigz, which stands for parallel implementation of gzip, is a fully functional replacement for gzip that exploits multiple processors and multiple cores to the hilt when local_compressing data. pigz was written by Mark Adler, and uses the zlib and pthread libraries. |
| [re2c]( | re2c is a free and open-source lexer generator for C and C++. Its main goal is generating fast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of using traditional table-driven approach, re2c encodes the generated finite state automata directly in the form of conditional jumps and comparisons. |
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