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Commit edcd43d6 authored by Easy Build's avatar Easy Build
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fix

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anselm.csv
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− 5
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......@@ -27,6 +27,7 @@ namd/2.8,1
xdrfile/1.1.4-foss-2015g,1
xdrfile/1.1.4-foss-2016a,1
xdrfile/1.1.4-intel-2015b,1
Clang/5.0.0-GCC-6.3.0-2.27,1
GCC/4.4.7-system,1
GCC/4.8.3,1
GCC/4.9.3-binutils-2.25,1
......@@ -45,6 +46,7 @@ GCCcore/6.4.0,1
GCCcore/7.1.0,1
LLVM/3.8.1-intel-2017a,1
LLVM/4.0.0-GCC-6.3.0-2.27,1
LLVM/5.0.0-GCC-6.3.0-2.27,1
OpenCoarrays/1.8.10-GCC-6.3.0-2.27,1
PGI/17.9-GCC-6.3.0-2.27,1
bupc/2.16.2,1
......@@ -149,6 +151,7 @@ CMake/3.7.2-intel-2017a,1
CMake/3.7.2,1
CMake/3.8.1,1
CMake/3.9.0,1
CMake/3.9.1,1
Caffe/1.0-foss-2016a-CUDA-8.0.44-Python-2.7.13,1
Doxygen/1.8.11-intel-2017a,1
Doxygen/1.8.11,1
......@@ -316,6 +319,8 @@ Java/1.7.0_79,1
Java/1.8.0_51,1
Java/1.8.0_112,1
Java/1.8.0_121,1
Java/1.8.0_144,1
Java/1.9.0+181,1
Lua/.5.1.4-8,1
Lua/5.1.4-8,1
Mono/4.6.2.16,1
......@@ -356,6 +361,7 @@ Tcl/8.6.4,1
Tcl/8.6.5-intel-2017a,1
Tcl/8.6.5,1
Tcl/8.6.6,1
Tcl/8.6.7-GCC-6.3.0-2.27,1
Yasm/1.3.0,1
byacc/20120526-foss-2015g,1
byacc/20120526-foss-2016a,1
......@@ -540,6 +546,7 @@ Keras/2.0.5-Tensorflow-1.1.0-CUDA-7.5.18-Python-3.6.1,1
Keras/2.0.5-Tensorflow-1.1.0-CUDA-8.0.44-Python-3.6.1,1
Keras/2.0.5-Tensorflow-1.1.0-Python-3.6.1,1
Keras/2.0.5-Theano-1.2.0-Python-3.6.1,1
Keras/2.0.8-Tensorflow-1.1.0-CUDA-8.0.44-Python-3.6.1,1
MATLAB/2015b-EDU-test,1
METIS/5.1.0-intel-2017a,1
METIS/5.1.0,1
......@@ -575,6 +582,7 @@ OpenMPI/1.10.2-GCC-4.9.3-2.25,1
OpenMPI/1.10.2-GCC-5.3.0-2.26,1
OpenMPI/1.10.7-GCC-6.3.0-2.27,1
OpenMPI/2.0.1-iccifort-2017.1.132-GCC-5.4.0-2.26,1
OpenMPI/2.0.1-iccifort-2017.1.132-GCC-6.3.0-2.27,1
OpenMPI/2.0.2-GCC-6.3.0-2.27,1
OpenMPI/2.1.0-GCC-6.3.0-2.27,1
bullxmpi/bullxmpi_1.2.4.1,1
......@@ -585,6 +593,7 @@ impi/5.0.3.048,1
impi/5.1.2.150-iccifort-2016.1.150-GCC-4.9.3-2.25,1
impi/2017.0.098-iccifort-2017.0.098-GCC-5.4.0-2.26,1
impi/2017.1.132-iccifort-2017.1.132-GCC-6.3.0-2.27,1
impi/2017.3.196-PGI-17.9-GCC-6.3.0-2.27,1
impi/2017.3.196-iccifort-2017.4.196-GCC-6.4.0-2.28,1
lam/7.1.4-icc,1
mvapich2/1.9-gcc,1
......@@ -642,6 +651,7 @@ imkl/11.3.1.150-iimpi-2016.01-GCC-4.9.3-2.25,1
imkl/2017.0.098-iimpi-2017.00-GCC-5.4.0-2.26,1
imkl/2017.1.132-iimpi-2017a,1
imkl/2017.1.132-iompi-2017a,1
imkl/2017.1.132-iompi-2017a-2.0.1,1
imkl/2017.3.196-iimpi-2017b,1
qrupdate/1.1.2-intel-2017a,1
fastqc/0.11.2,1
......@@ -653,6 +663,8 @@ ngsPipeline/1.0.0,1
picard/1.117,1
samtools/0.1.19,1
snpEff/3.6,1
CentOS/6.9-GPU-shell,1
CentOS/6.9-GPU,1
CentOS/6.9-shell,1
CentOS/6.9,1
CentOS/7.3.1611-shell,1
......@@ -672,6 +684,8 @@ PDT/3.24,1
Scalasca/2.3.1-foss-2016a,1
Score-P/2.0.1-foss-2016a,1
Vampir/8.5.0,1
ALAMODE/0.9.8-intel-2017a,1
DynaPhoPy/1.15-intel-2017a-Python-2.7.13-base,1
Siesta/4.1-b2-intel-2017a,1
VASP/5.4.1-intel-2015b-24Jun15,1
VASP/5.4.4-intel-2016a-CUDA-8.0.44-mkl=sequential,1
......@@ -737,6 +751,7 @@ intel/2017b,1
intel/2017.00,1
iomkl/2017a,1
iompi/2017a,1
iompi/2017a-2.0.1,1
ANSYS/14.5.x,1
ANSYS/15.0.x,1
ANSYS/16.0.x,1
......@@ -748,10 +763,8 @@ APR/1.5.2-foss-2015g,1
APR/1.5.2,1
Bash/4.3,1
DMTCP/2.5.1,1
EasyBuild/3.2.1,1
EasyBuild/3.3.0,1
EasyBuild/3.3.1,1
EasyBuild/3.4.0,1
EasyBuild/3.4.1,1
GLPK/4.61-intel-2017a,1
Ghostscript/9.21-intel-2017a,1
JOE/4.2,1
......@@ -760,6 +773,7 @@ Lmod/.7.0.6,1
Lmod/7.2.2,1
Lmod/7.3.28,1
Lmod/7.4.4,1
Lmod/7.7.7,1
MATLAB/2015b-COM,1
MATLAB/2015b-EDU,1
MIKE/MIKE-old,1
......@@ -773,9 +787,9 @@ R/3.1.1,1
RStudio/0.98.1103,1
Serf/1.3.8-foss-2015g,1
Singularity/2.2.1-GCC-6.3.0-2.27,1
Singularity/2.2.99-GCC-6.3.0-2.27-develop,1
Singularity/2.3-develop,1
Singularity/2.3.1,1
Singularity/2.3.2,1
Singularity/2.4,1
Subversion/1.8.16-foss-2015g,1
Szip/2.1-foss-2016a,1
Szip/2.1-intel-2015b,1
......@@ -784,6 +798,8 @@ Szip/2.1-intel-2017a,1
Szip/2.1,1
VTune/2016_update1,1
VTune/2017_update2,1
VTune/2017_update4,1
VTune/2018,1
XZ/5.2.2-foss-2016a,1
XZ/5.2.2-intel-2017.00,1
XZ/5.2.2,1
......@@ -955,6 +971,7 @@ Tk/8.6.4-no-X11,1
Tk/8.6.5-intel-2017a,1
Tk/8.6.5,1
Tk/8.6.6,1
Tk/8.6.7-GCC-6.3.0-2.27,1
VTK/6.3.0-intel-2017a-Python-2.7.13,1
VTK/7.1.1-intel-2017a-Python-2.7.13,1
X11/20160819,1
......@@ -999,7 +1016,9 @@ matplotlib/1.5.1-Python-2.7.13-freetype-2.6.3,1
matplotlib/2.0.2-Python-2.7.13-base,1
matplotlib/2.0.2-Python-3.6.1-libpng-1.6.29,1
motif/2.3.7,1
opencv-python/3.3.0.10-Python-3.6.1,1
pixman/0.32.6,1
pixman/0.34.0,1
scikit-image/0.12.3-Python-2.7.13,1
seekpath/1.5.0-Python-2.7.13-base,1
x264/20160430,1
anselm.md
+ 128
− 123
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get_modules.sh
+ 4
− 0
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......@@ -15,6 +15,7 @@ if [ ! -z `hostname -f | grep "bullx"` ]; then
./modules.py > anselm.md
else
ml --show-hidden -t av 2>&1 > /dev/null| awk '{print $1 ",2"}' | grep -v -e '/,\|:' > salomon.csv
<<<<<<< HEAD
./modules.py > salomon.md
MODULEBASE="/appsuv/modules"
......@@ -41,6 +42,9 @@ else
ml --show-hidden -t av 2>&1 > /dev/null| awk '{print $1 ",3"}' | grep -v -e '/,\|:' > uv2000.csv
./modules.py > uv2000.md
=======
./modules.py > salomon.md
>>>>>>> 2bf4ea5a110c8c72df1999bc0bb501df63492ea0
fi
DATE=`date -R`
......
modules.py
+ 11
− 3
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......@@ -22,14 +22,22 @@ def get_software_versions(software_path):
def get_module_description(module_path):
"""Return software homepage URL and description"""
url = ""
url_position = 0
description = "&nbsp;"
with open(module_path) as f:
content = f.read()
data = re.search(r"module-whatis\s{(Description: )?(.+)\s-\sHomepage:\s(\S+)}",
content, re.DOTALL)
if module_path.endswith('lua'):
data = re.search(r"whatis\((\[\[|\[==\[)Description: ?([\s\S]+)(\]\]|\]==\])\)\s+whatis\((\[\[|\[==\[)Homepage:\s(\S+)(\]\]|\]==\])\)",
content, re.DOTALL)
url_position = 5
else:
data = re.search(r"module-whatis\s{(Description: )?(.+)\s-\sHomepage:\s(\S+)}",
content, re.DOTALL)
url_position = 3
try:
description = data.group(2)
url = data.group(3)
url = data.group(url_position)
except AttributeError:
pass
return url, description
......
salomon.csv
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− 0
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salomon.md
+ 492
− 0
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uv2000.csv
+ 3
− 0
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<<<<<<< HEAD
FastQC/0.11.3,3
GATK/2.6-5-Java-1.7.0_79,3
SnpEff/4.1_G,3
......@@ -272,3 +273,5 @@ gettext/0.19.8,3
gettext/0.19.8.1,3
libGLU/9.0.0,3
pixman/0.34.0,3
=======
>>>>>>> 2bf4ea5a110c8c72df1999bc0bb501df63492ea0
uv2000.md
+ 3
− 0
View file @ edcd43d6
# Available Modules
<<<<<<< HEAD
## Bio
......@@ -200,3 +201,5 @@
| [Tk](http://www.tcl.tk/) | Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages. |
| [VisIt](https://wci.llnl.gov/simulation/computer-codes/visit) | VisIt is an Open Source, interactive, scalable, visualization, animation and analysis tool |
| X11 | &nbsp; |
=======
>>>>>>> 2bf4ea5a110c8c72df1999bc0bb501df63492ea0
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