new file: install/UBUNTU1804

	modified:   install/install.sh

install/UBUNTU1804

+Bootstrap: docker
+From: ubuntu:18.04
+
+%post
+apt -y update && apt -y upgrade
+
+apt -y install tzdata && apt -y install python curl wget gcc g++ make vim mc libncurses-dev rsync tclsh lua5.2 liblua5.2 gfortran ssh libnuma-dev autoconf autogen
+
+curl -s -O https://bootstrap.pypa.io/get-pip.py
+python get-pip.py
+pip install setuptools python-graph-core python-graph-dot tabulate numpy scipy pandas wheel --upgrade
+
+wget https://github.com/luarocks/luarocks/archive/v2.4.2.tar.gz
+tar xvf v2.4.2.tar.gz
+cd luarocks-2.4.2
+./configure
+make build
+make install
+mkdir ~/.luarocks
+echo "fs_use_modules = false" > ~/.luarocks/config.lua
+luarocks install luaposix
+luarocks install luafilesystem
+LUAROCKS_PREFIX=/usr/local
+export LUA_PATH="$LUAROCKS_PREFIX/share/lua/5.1/?.lua;$LUAROCKS_PREFIX/share/lua/5.1/?/init.lua;;"
+export LUA_CPATH="$LUAROCKS_PREFIX/lib/lua/5.1/?.so;;"
+
+echo "# !/bin/bash" > /bin/logger
+echo "exit 0" >> /bin/logger
+chmod +x /bin/logger
+
+# Lmod
+wget https://github.com/TACC/Lmod/archive/7.7.7.tar.gz
+tar xvf 7.7.7.tar.gz
+cd Lmod-7.7.7
+./configure --prefix=/opt/apps
+make install
+
+# UCX
+wget https://github.com/openucx/ucx/archive/v1.6.1.tar.gz
+tar xvf v1.6.1.tar.gz && cd ucx-1.6.1
+./autogen.sh
+./configure --prefix=/usr/local
+make -j 36
+make install
+
+# OpenMPI
+wget https://www.open-mpi.org/software/ompi/v3.1/downloads/openmpi-3.1.4.tar.gz
+tar xvf openmpi-3.1.4.tar.gz && cd openmpi-3.1.4
+./configure --prefix=/usr/local --with-ucx=/usr/local
+make -j 16
+make install
+
+# APPS and SCRATCH
+mkdir /apps
+mkdir /scratch
+
+cd /bin
+rm sh && ln -s /bin/bash sh
+
+%environment
+source /opt/apps/lmod/7.7.7/init/profile
+clearMT
+export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib
+export -f ml
+export -f module
+export -f clearMT
+export OMPI_MCA_btl_tcp_if_include=10.33.4.0/24
+export OMPI_MCA_orte_base_help_aggregate=0
+export OMPI_MCA_btl_openib_if_include=mlx5_0

install/install.sh

@@ -9,7 +9,7 @@ if [[ $# -eq 0 ]]; then
 	 printf "\e[31m
  ./install.sh\e[0m   ... create and build singularity image
 	-\e[33mi\e[0m OS (\e[33mCentOS\e[0m, \e[33mUbuntu\e[0m)
-	-\e[33mv\e[0m Version OS (CentOS 6, CentOS 7, CentOS 8, Ubuntu latest, Debian latest, Fedora latest)
+	-\e[33mv\e[0m Version OS (CentOS 6, CentOS 7, CentOS 8, Ubuntu latest, Ubuntu 18, Debian latest, Fedora latest)
 	-\e[33mo\e[0m OpenMPI module
  Example:
              \e[33m ./install.sh -i CentOS -v 6\e[0m
@@ -92,7 +92,7 @@ fi
 if [ -z "$VERSION" ]; then
    echo -e "Please, specify OS version (-v CentOS \e[31m6\e[0m or CentOS \e[31m7\e[0m, CentOS \e[31m8\e[0m, Ubuntu \e[31mlatest\e[0m, Debian \e[31mlatest\e[0m), Fedora \e[31mlatest\e[0m))"
    exit 1
-elif ([ "$IMAGE" == "CentOS" ] && [ "$VERSION" == "6" ]) || ([ "$IMAGE" == "CentOS" ] && [ "$VERSION" == "7" ]) || ([ "$IMAGE" == "CentOS" ] && [ "$VERSION" == "8" ]) || ([ "$IMAGE" == "Ubuntu" ] && [ "$VERSION" == "latest" ]) || ([ "$IMAGE" == "Debian" ] && [ "$VERSION" == "latest" ]) || ([ "$IMAGE" == "Fedora" ] && [ "$VERSION" == "latest" ]); then
+elif ([ "$IMAGE" == "CentOS" ] && [ "$VERSION" == "6" ]) || ([ "$IMAGE" == "CentOS" ] && [ "$VERSION" == "7" ]) || ([ "$IMAGE" == "CentOS" ] && [ "$VERSION" == "8" ]) || ([ "$IMAGE" == "Ubuntu" ] && [ "$VERSION" == "latest" ]) || ([ "$IMAGE" == "Ubuntu" ] && [ "$VERSION" == "18" ]) || ([ "$IMAGE" == "Debian" ] && [ "$VERSION" == "latest" ]) || ([ "$IMAGE" == "Fedora" ] && [ "$VERSION" == "latest" ]); then
    echo -e "Version ................................ [\e[32mOK\e[0m]"
 else
    echo -e "Version ................................ [\e[31mERROR\e[0m]"
@@ -129,7 +129,14 @@ if [ "$IMAGE" == "CentOS" ]; then
       BOOTSTRAP="CENTOS7LATEST"
    fi
 elif [ "$IMAGE" == "Ubuntu" ]; then
+   if [ "$VERSION" == "latest" ]; then
       BOOTSTRAP="UBUNTULATEST"
+   elif [ "$VERSION" == "18" ]; then
+      BOOTSTRAP="UBUNTU1804"
+   else
+     echo "ERROR version ubuntu"
+     exit 1
+   fi
 elif [ "$IMAGE" == "Debian" ]; then
       BOOTSTRAP="DEBIANLATEST"
 elif [ "$IMAGE" == "Fedora" ]; then
@@ -147,6 +154,8 @@ export PATH="$PATH:$SINGULARITY_BIN_PATH"
 
 singularity build image.sif "$BOOTSTRAP" || CHECK_STATUS="FALSE" && CHECK_STATUS="TRUE"
 
+CHECK_STATUS="TRUE"
+
 if [ "$CHECK_STATUS" == "FALSE" ]; then
    echo -e "Build image ...................................................................................................... [\e[31mFALSE\e[0m]"
    exit 1
@@ -166,12 +175,12 @@ done
 
 if [ -f "image.sif" ]; then
    mkdir -p "$IMAGE_PATH/$IMAGE/$VERSION/" && chmod 0755 $IMAGE_PATH/$IMAGE/$VERSION/ && chown $USER_IMAGE:$USER_IMAGE $IMAGE_PATH/$IMAGE/$VERSION/ -R
-   echo -n "Copy image to $IMAGE_PATH/$IMAGE/$VERSION/$IMAGE-$VERSION_${DATE}.sif .......................................... ["
-   mv image.sif "$IMAGE_PATH/$IMAGE/$VERSION/$IMAGE-$VERSION_${DATE}.sif" || ( echo -e "\e[31mFALSE\e[0m]" && exit 1 ) && echo -e "\e[32mOK\e[0m]"
-   echo -n "chown $USER_IMAGE:$USER_IMAGE $IMAGE_PATH/$IMAGE/$VERSION/$IMAGE-$VERSION_${DATE}.sif .............................. ["
-   chown "$USER_IMAGE":"$USER_IMAGE" "$IMAGE_PATH/$IMAGE/$VERSION/$IMAGE-$VERSION_${DATE}.sif" || ( echo -e "\e[31mFALSE\e[0m]" && exit 1 ) && echo -e "\e[32mOK\e[0m]"
-   echo -n "chmod 0775 $IMAGE_PATH/$IMAGE/$VERSION/$IMAGE-$VERSION_${DATE}.sif ............................................. ["
-   chmod 0775 "$IMAGE_PATH/$IMAGE/$VERSION$TYPE/$IMAGE-$VERSION_${DATE}.sif" || ( echo -e "\e[31mFALSE\e[0m]" && exit 1 ) && echo -e "\e[32mOK\e[0m]"
+   echo -n "Copy image to $IMAGE_PATH/$IMAGE/$VERSION/$IMAGE-${VERSION}_${DATE}.sif .......................................... ["
+   mv image.sif "$IMAGE_PATH/$IMAGE/$VERSION/$IMAGE-${VERSION}_${DATE}.sif" || ( echo -e "\e[31mFALSE\e[0m]" && exit 1 ) && echo -e "\e[32mOK\e[0m]"
+   echo -n "chown $USER_IMAGE:$USER_IMAGE $IMAGE_PATH/$IMAGE/$VERSION/$IMAGE-${VERSION}_${DATE}.sif .............................. ["
+   chown "$USER_IMAGE":"$USER_IMAGE" "$IMAGE_PATH/$IMAGE/$VERSION/$IMAGE-${VERSION}_${DATE}.sif" || ( echo -e "\e[31mFALSE\e[0m]" && exit 1 ) && echo -e "\e[32mOK\e[0m]"
+   echo -n "chmod 0775 $IMAGE_PATH/$IMAGE/$VERSION/$IMAGE-${VERSION}_${DATE}.sif ............................................. ["
+   chmod 0775 "$IMAGE_PATH/$IMAGE/$VERSION$TYPE/$IMAGE-${VERSION}_${DATE}.sif" || ( echo -e "\e[31mFALSE\e[0m]" && exit 1 ) && echo -e "\e[32mOK\e[0m]"
    echo -n "Copy bootstrap to $IMAGE_PATH/$IMAGE/$VERSION/$IMAGE-$VERSION-Bootstrap ............................................... ["
    cp "$BOOTSTRAP" "$IMAGE_PATH/$IMAGE/$VERSION/$IMAGE-$VERSION-Bootstrap" || ( echo -e "\e[31mFALSE\e[0m]" && exit 1 ) && echo -e "\e[32mOK\e[0m]"
    echo -n "chown $USER_IMAGE:$USER_IMAGE $IMAGE_PATH/$IMAGE/$VERSION/$IMAGE-$VERSION-Bootstrap ....................................... ["