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BioinformaticDataCompression
BigDataViewer_Core_Extension
Commits
1c1477dd
Commit
1c1477dd
authored
10 years ago
by
Tobias Pietzsch
Browse files
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catch (and ignore) NumberFormatException
parent
6dd878e4
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Changes
2
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2 changed files
core/src/main/java/tgmm/ShowEllipsoids.java
+1
-1
1 addition, 1 deletion
core/src/main/java/tgmm/ShowEllipsoids.java
core/src/main/java/tgmm/TgmmXmlReader.java
+22
-44
22 additions, 44 deletions
core/src/main/java/tgmm/TgmmXmlReader.java
with
23 additions
and
45 deletions
core/src/main/java/tgmm/ShowEllipsoids.java
+
1
−
1
View file @
1c1477dd
...
...
@@ -118,7 +118,7 @@ public class ShowEllipsoids
final
Interval
imgSourceInterval
=
imgSource
.
getSource
(
timepointIndex
,
0
);
final
HashMap
<
Integer
,
EllipsoidRealRandomAccessible
>
timepointIndexToEllipsoidAccessible
=
new
HashMap
<
Integer
,
EllipsoidRealRandomAccessible
>();
for
(
int
tp
=
240
;
tp
<
2
48
;
++
tp
)
for
(
int
tp
=
240
;
tp
<
2
50
;
++
tp
)
{
final
int
timepointId
=
tp
+
1
;
final
String
tgmmFilename
=
"/Users/pietzsch/Desktop/data/Fernando/extract/GMEMfinalResult_frame0"
+
timepointId
+
".xml"
;
...
...
This diff is collapsed.
Click to expand it.
core/src/main/java/tgmm/TgmmXmlReader.java
+
22
−
44
View file @
1c1477dd
...
...
@@ -11,24 +11,6 @@ import org.jdom2.input.SAXBuilder;
public
class
TgmmXmlReader
{
public
static
void
main
(
final
String
[]
args
)
{
try
{
final
ArrayList
<
Gaussian
>
gaussians
=
read
(
"/Users/pietzsch/Desktop/data/Fernando/extract/GMEMfinalResult_frame0249.xml"
);
// for ( final Gaussian g : gaussians )
// System.out.println( g );
}
catch
(
final
IOException
e
)
{
e
.
printStackTrace
();
}
catch
(
final
JDOMException
e
)
{
e
.
printStackTrace
();
}
}
public
static
class
Gaussian
{
private
final
double
nu
;
...
...
@@ -110,24 +92,12 @@ public class TgmmXmlReader
public
static
double
[]
getDoubleArrayAttribute
(
final
Element
parent
,
final
String
name
)
{
try
{
final
String
text
=
parent
.
getAttributeValue
(
name
);
final
String
[]
entries
=
text
.
split
(
"\\s+"
);
final
double
[]
array
=
new
double
[
entries
.
length
];
for
(
int
i
=
0
;
i
<
entries
.
length
;
++
i
)
array
[
i
]
=
Double
.
parseDouble
(
entries
[
i
]
);
return
array
;
}
catch
(
final
Exception
e
)
{
final
String
text
=
parent
.
getAttributeValue
(
name
);
System
.
out
.
println
(
text
);
final
String
[]
entries
=
text
.
split
(
"\\s+"
);
for
(
int
i
=
0
;
i
<
entries
.
length
;
++
i
)
System
.
out
.
println
(
entries
[
i
]
);
return
null
;
}
final
String
text
=
parent
.
getAttributeValue
(
name
);
final
String
[]
entries
=
text
.
split
(
"\\s+"
);
final
double
[]
array
=
new
double
[
entries
.
length
];
for
(
int
i
=
0
;
i
<
entries
.
length
;
++
i
)
array
[
i
]
=
Double
.
parseDouble
(
entries
[
i
]
);
return
array
;
}
public
static
int
getIntAttribute
(
final
Element
parent
,
final
String
name
)
...
...
@@ -145,14 +115,22 @@ public class TgmmXmlReader
final
ArrayList
<
Gaussian
>
gaussians
=
new
ArrayList
<
Gaussian
>();
for
(
final
Element
elem
:
gaussianMixtureModels
)
{
final
double
nu
=
getDoubleAttribute
(
elem
,
"nu"
);
final
double
[]
m
=
getDoubleArrayAttribute
(
elem
,
"m"
);
final
double
[]
W
=
getDoubleArrayAttribute
(
elem
,
"W"
);
final
int
id
=
getIntAttribute
(
elem
,
"id"
);
final
int
lineage
=
getIntAttribute
(
elem
,
"lineage"
);
final
int
parent
=
getIntAttribute
(
elem
,
"parent"
);
gaussians
.
add
(
new
Gaussian
(
nu
,
m
,
W
,
id
,
lineage
,
parent
)
);
try
{
final
double
nu
=
getDoubleAttribute
(
elem
,
"nu"
);
final
double
[]
m
=
getDoubleArrayAttribute
(
elem
,
"m"
);
final
double
[]
W
=
getDoubleArrayAttribute
(
elem
,
"W"
);
final
int
id
=
getIntAttribute
(
elem
,
"id"
);
final
int
lineage
=
getIntAttribute
(
elem
,
"lineage"
);
final
int
parent
=
getIntAttribute
(
elem
,
"parent"
);
gaussians
.
add
(
new
Gaussian
(
nu
,
m
,
W
,
id
,
lineage
,
parent
)
);
}
catch
(
final
NumberFormatException
e
)
{
e
.
printStackTrace
();
System
.
out
.
println
(
"ignoring "
+
elem
);
}
}
return
gaussians
;
}
...
...
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