pom.xml

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>

    <parent>
        <groupId>org.scijava</groupId>
        <artifactId>pom-scijava</artifactId>
        <version>28.0.0</version>
        <relativePath/>
    </parent>

    <groupId>sc.fiji</groupId>
    <artifactId>bigdataviewer-server</artifactId>
    <version>3.0.1-QCMP-SNAPSHOT</version>

    <name>BigDataServer</name>
    <description>A web server for BigDataViewer datasets.</description>
    <url>https://imagej.net/BigDataServer</url>
    <inceptionYear>2014</inceptionYear>
    <organization>
        <name>BigDataViewer</name>
        <url>https://imagej.net/BigDataViewer</url>
    </organization>
    <licenses>
        <license>
            <name>GNU General Public License v3+</name>
            <url>https://www.gnu.org/licenses/gpl.html</url>
            <distribution>repo</distribution>
        </license>
    </licenses>

    <developers>
        <developer>
            <id>mor0146</id>
            <name>Vojtech Moravec</name>
        </developer>
    </developers>
    <contributors>
        <contributor>
            <name>HongKee Moon</name>
            <url>https://imagej.net/User:Moon</url>
            <properties>
                <id>hkmoon</id>
            </properties>
        </contributor>
    </contributors>

    <mailingLists>
        <mailingList>
            <name>Image.sc Forum</name>
            <archive>https://forum.image.sc/tags/bigdataviewer</archive>
        </mailingList>
    </mailingLists>

    <scm>
        <connection>scm:git:git://github.com/bigdataviewer/bigdataviewer-server</connection>
        <developerConnection>scm:git:git@github.com:bigdataviewer/bigdataviewer-server</developerConnection>
        <tag>HEAD</tag>
        <url>https://github.com/bigdataviewer/bigdataviewer-server</url>
    </scm>
    <issueManagement>
        <system>GitHub Issues</system>
        <url>https://github.com/bigdataviewer/bigdataviewer-server/issues</url>
    </issueManagement>
    <ciManagement>
        <system>Travis CI</system>
        <url>https://travis-ci.org/bigdataviewer/bigdataviewer-server</url>
    </ciManagement>

    <properties>
        <package-name>bdv.server</package-name>
        <main-class>bdv.server.BigDataServer</main-class>
        <license.licenseName>gpl_v3</license.licenseName>
        <license.copyrightOwners>BigDataViewer developers.</license.copyrightOwners>

        <!-- NB: Deploy releases to the SciJava Maven repository. -->
        <releaseProfiles>deploy-to-scijava</releaseProfiles>

        <commons-cli.version>1.2</commons-cli.version>
        <stringtemplate.version>3.2.1</stringtemplate.version>

        <!-- TODO: Remove these version pins and update the code. -->
        <bigdataviewer-core.version>9.0.3</bigdataviewer-core.version>
        <imglib2.version>5.9.0</imglib2.version>
        <imglib2-cache.version>1.0.0-beta-13</imglib2-cache.version>
        <spim_data.version>2.2.4</spim_data.version>
    </properties>

    <repositories>
        <repository>
            <id>scijava.public</id>
            <url>https://maven.scijava.org/content/groups/public</url>
        </repository>
        <repository>
            <id>cz.it4i</id>
            <url>https://code.it4i.cz/api/v4/projects/932/packages/maven</url>
        </repository>
        <repository>
            <id>gitlab-maven-bdv-server</id>
            <url>https://code.it4i.cz/api/v4/projects/934/packages/maven</url>
        </repository>
    </repositories>

    <distributionManagement>
        <repository>
            <id>gitlab-maven-bdv-server</id>
            <url>https://code.it4i.cz/api/v4/projects/934/packages/maven</url>
        </repository>
        <snapshotRepository>
            <id>gitlab-maven-bdv-server</id>
            <url>https://code.it4i.cz/api/v4/projects/934/packages/maven</url>
        </snapshotRepository>
    </distributionManagement>


    <dependencies>
        <dependency>
            <groupId>sc.fiji</groupId>
            <artifactId>bigdataviewer-core</artifactId>
        </dependency>
        <dependency>
            <groupId>org.eclipse.jetty</groupId>
            <artifactId>jetty-server</artifactId>
        </dependency>
        <dependency>
            <groupId>org.antlr</groupId>
            <artifactId>stringtemplate</artifactId>
            <version>${stringtemplate.version}</version>
        </dependency>
        <dependency>
            <groupId>commons-cli</groupId>
            <artifactId>commons-cli</artifactId>
            <version>${commons-cli.version}</version>
        </dependency>
        <dependency>
            <groupId>org.slf4j</groupId>
            <artifactId>slf4j-simple</artifactId>
            <version>1.7.28</version>
        </dependency>
        <dependency>
            <groupId>cz.it4i</groupId>
            <artifactId>QcmpCompression</artifactId>
            <version>0.5-SNAPSHOT</version>
        </dependency>
        <dependency>
            <groupId>net.imglib2</groupId>
            <artifactId>imglib2</artifactId>
        </dependency>
    </dependencies>

    <profiles>
        <profile>
            <id>fatjar</id>
            <build>
                <plugins>
                    <!-- Maven shade for Uber Jar -->
                    <!-- https://maven.apache.org/plugins/maven-shade-plugin/shade-mojo.html -->
                    <!-- https://databricks.gitbooks.io/databricks-spark-knowledge-base/content/troubleshooting/missing_dependencies_in_jar_files.html -->
                    <plugin>
                        <groupId>org.apache.maven.plugins</groupId>
                        <artifactId>maven-shade-plugin</artifactId>
                        <configuration>
                            <!-- Do not minimize for now to speed up packaging. -->
                            <transformers combine.children="append">
                                <transformer implementation="org.apache.maven.plugins.shade.resource.AppendingTransformer">
                                    <resource>META-INF/json/org.scijava.plugin.Plugin</resource>
                                </transformer>
                                <transformer implementation="org.apache.maven.plugins.shade.resource.AppendingTransformer">
                                    <resource>META-INF/json/mpicbg.spim.data.generic.sequence.ImgLoaderIo</resource>
                                </transformer>
                            </transformers>
                            <!--<minimizeJar>true</minimizeJar> -->
                            <filters>
                                <filter>
                                    <artifact>*:*</artifact>
                                    <excludes>
                                        <exclude>META-INF/*.SF</exclude>
                                        <exclude>META-INF/*.DSA</exclude>
                                        <exclude>META-INF/*.RSA</exclude>
                                    </excludes>
                                </filter>
                            </filters>
                            <!-- Additional configuration. -->
                            <relocations>
                                <relocation>
                                    <pattern>org.apache.commons.compress</pattern>
                                    <shadedPattern>org.janelia.saalfeldlab.org.apache.commons.compress</shadedPattern>
                                </relocation>
                            </relocations>
                        </configuration>
                        <!-- binds by default to package phase -->
                        <executions>
                            <execution>
                                <phase>package</phase>
                                <goals>
                                    <goal>shade</goal>
                                </goals>
                            </execution>
                        </executions>
                    </plugin>
                    <!-- Maven shade end -->
                </plugins>
            </build>
        </profile>
    </profiles>
</project>